DN617980

Overview
NameDN617980
Unique NameDN617980
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length590
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617980 vs. ExPASy Swiss-Prot
Match: ODPB_PEA (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.871e-20
Identity = 55/156 (35.26%), Postives = 87/156 (55.77%), Query Frame = -2
Query:  131 EHVLLYN----LKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLC 586
            E+ LLY     +   + D  +   + +A++ R G+ VTI  +S+M    ++AA+ L  +G   EVI++RS++P D  TI  S++KT+R++ VEE     G+GA +  ++ E    YLDA +  +   DVP PYAG LE   V     IV A ++ C
Sbjct:  194 ENELLYGESFPVSAEVLDSSFWLPIGKAKIEREGKDVTITAFSKMVGFALKAAEILEKEGISAEVINLRSIRPLDRPTINASVRKTNRLVTVEEGFPQHGVGAEICTSVIEESFGYLDATVERIGGADVPMPYAGNLERLVVPHVEDIVRAAKRAC 349          
BLAST of DN617980 vs. ExPASy Swiss-Prot
Match: ODPB_CAEEL (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Caenorhabditis elegans GN=C04C3.3 PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 5.444e-20
Identity = 57/155 (36.77%), Postives = 91/155 (58.71%), Query Frame = -2
Query:  137 EHVLLYNLKERIPDE----EYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITE-NFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQ 586
            E+ +LY     + DE    +++  + +A++ R G+HVTI++YSR     ++AAK L   G   EVI++RSL+PFD  +I  S+ KTH ++ VE      GIG+ + A + E +  D LDAP++ ++  DVP PY  TLE   +     +V AV++
Sbjct:  193 ENEILYGQSFPVGDEVLSDDFVVPIGKAKIERAGDHVTIVSYSRGVEFSLEAAKQLEAIGVSAEVINLRSLRPFDFESIRQSVHKTHHLVSVETGWPFAGIGSEIAAQVMESDVFDQLDAPLLRVTGVDVPMPYTQTLEAAALPTAEHVVKAVKK 347          
BLAST of DN617980 vs. ExPASy Swiss-Prot
Match: ODPB_BOVIN (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Bos taurus GN=PDHB PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 5.444e-20
Identity = 55/155 (35.48%), Postives = 94/155 (60.65%), Query Frame = -2
Query:  137 EHVLLYNLKERIPDE----EYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITEN-FHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQ 586
            E+ L+Y +   +P E    +++  + +A++ R G HVTI+ +SR   H ++AA  L  +G + EVI++R+++P D+ TI  S+ KT+ ++ VE      G+GA + A I E    ++LDAP V ++  DVP PYA  LE+ +V Q   I+ A+++
Sbjct:  201 ENELMYGVPFELPSEAQSKDFLIPIGKAKIERQGTHVTIVAHSRPVGHCLEAATVLSKEGIECEVINLRTIRPMDIETIEGSVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNSVPQVKDIIFAIKK 355          
BLAST of DN617980 vs. ExPASy Swiss-Prot
Match: ODPB_STAAW (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain MW2) GN=pdhB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.110e-20
Identity = 49/137 (35.77%), Postives = 84/137 (61.31%), Query Frame = -2
Query:  179 EHVLLY-NLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEW 586
            EH+ LY + +E +P+EEY  ++ +A + + G  ++I+TY  M    M+AA+ L   GY  EVID+R+++P D+ TI  S++KT R ++V+E  R  G+GA++ A ++E     L+API  +++ D   P+      W
Sbjct:  172 EHMKLYRSFREEVPEEEYTIDIGKANVKKEGNDISIITYGAMVQESMKAAEELEKDGYSVEVIDLRTVQPIDVDTIVASVEKTGRAVVVQEAQRQAGVGAAVVAELSERAILSLEAPIGRVAAADTIYPFTQAENVW 308          
BLAST of DN617980 vs. ExPASy Swiss-Prot
Match: ODPB_STAAU (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus GN=pdhB PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.110e-20
Identity = 49/137 (35.77%), Postives = 84/137 (61.31%), Query Frame = -2
Query:  179 EHVLLY-NLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEW 586
            EH+ LY + +E +P+EEY  ++ +A + + G  ++I+TY  M    M+AA+ L   GY  EVID+R+++P D+ TI  S++KT R ++V+E  R  G+GA++ A ++E     L+API  +++ D   P+      W
Sbjct:  172 EHMKLYRSFREEVPEEEYTIDIGKANVKKEGNDISIITYGAMVQESMKAAEELEKDGYSVEVIDLRTVQPIDVDTIVASVEKTGRAVVVQEAQRQAGVGAAVVAELSERAILSLEAPIGRVAAADTIYPFTQAENVW 308          
BLAST of DN617980 vs. ExPASy Swiss-Prot
Match: ODPB_STAAS (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain MSSA476) GN=pdhB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.110e-20
Identity = 49/137 (35.77%), Postives = 84/137 (61.31%), Query Frame = -2
Query:  179 EHVLLY-NLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEW 586
            EH+ LY + +E +P+EEY  ++ +A + + G  ++I+TY  M    M+AA+ L   GY  EVID+R+++P D+ TI  S++KT R ++V+E  R  G+GA++ A ++E     L+API  +++ D   P+      W
Sbjct:  172 EHMKLYRSFREEVPEEEYTIDIGKANVKKEGNDISIITYGAMVQESMKAAEELEKDGYSVEVIDLRTVQPIDVDTIVASVEKTGRAVVVQEAQRQAGVGAAVVAELSERAILSLEAPIGRVAAADTIYPFTQAENVW 308          
BLAST of DN617980 vs. ExPASy Swiss-Prot
Match: ODPB_STAAR (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain MRSA252) GN=pdhB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.110e-20
Identity = 49/137 (35.77%), Postives = 84/137 (61.31%), Query Frame = -2
Query:  179 EHVLLY-NLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEW 586
            EH+ LY + +E +P+EEY  ++ +A + + G  ++I+TY  M    M+AA+ L   GY  EVID+R+++P D+ TI  S++KT R ++V+E  R  G+GA++ A ++E     L+API  +++ D   P+      W
Sbjct:  172 EHMKLYRSFREEVPEEEYTIDIGKANVKKEGNDISIITYGAMVQESMKAAEELEKDGYSVEVIDLRTVQPIDVDTIVASVEKTGRAVVVQEAQRQAGVGAAVVAELSERAILSLEAPIGRVAAADTIYPFTQAENVW 308          
BLAST of DN617980 vs. ExPASy Swiss-Prot
Match: ODPB_STAAN (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain N315) GN=pdhB PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.110e-20
Identity = 49/137 (35.77%), Postives = 84/137 (61.31%), Query Frame = -2
Query:  179 EHVLLY-NLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEW 586
            EH+ LY + +E +P+EEY  ++ +A + + G  ++I+TY  M    M+AA+ L   GY  EVID+R+++P D+ TI  S++KT R ++V+E  R  G+GA++ A ++E     L+API  +++ D   P+      W
Sbjct:  172 EHMKLYRSFREEVPEEEYTIDIGKANVKKEGNDISIITYGAMVQESMKAAEELEKDGYSVEVIDLRTVQPIDVDTIVASVEKTGRAVVVQEAQRQAGVGAAVVAELSERAILSLEAPIGRVAAADTIYPFTQAENVW 308          
BLAST of DN617980 vs. ExPASy Swiss-Prot
Match: ODPB_STAAM (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=pdhB PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.110e-20
Identity = 49/137 (35.77%), Postives = 84/137 (61.31%), Query Frame = -2
Query:  179 EHVLLY-NLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEW 586
            EH+ LY + +E +P+EEY  ++ +A + + G  ++I+TY  M    M+AA+ L   GY  EVID+R+++P D+ TI  S++KT R ++V+E  R  G+GA++ A ++E     L+API  +++ D   P+      W
Sbjct:  172 EHMKLYRSFREEVPEEEYTIDIGKANVKKEGNDISIITYGAMVQESMKAAEELEKDGYSVEVIDLRTVQPIDVDTIVASVEKTGRAVVVQEAQRQAGVGAAVVAELSERAILSLEAPIGRVAAADTIYPFTQAENVW 308          
BLAST of DN617980 vs. ExPASy Swiss-Prot
Match: ODPB_STAAC (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain COL) GN=pdhB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.110e-20
Identity = 49/137 (35.77%), Postives = 84/137 (61.31%), Query Frame = -2
Query:  179 EHVLLY-NLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEW 586
            EH+ LY + +E +P+EEY  ++ +A + + G  ++I+TY  M    M+AA+ L   GY  EVID+R+++P D+ TI  S++KT R ++V+E  R  G+GA++ A ++E     L+API  +++ D   P+      W
Sbjct:  172 EHMKLYRSFREEVPEEEYTIDIGKANVKKEGNDISIITYGAMVQESMKAAEELEKDGYSVEVIDLRTVQPIDVDTIVASVEKTGRAVVVQEAQRQAGVGAAVVAELSERAILSLEAPIGRVAAADTIYPFTQAENVW 308          
The following BLAST results are available for this feature:
BLAST of DN617980 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
ODPB_PEA1.871e-2035.26Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_CAEEL5.444e-2036.77Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_BOVIN5.444e-2035.48Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_STAAW7.110e-2035.77Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAU7.110e-2035.77Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAS7.110e-2035.77Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAR7.110e-2035.77Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAN7.110e-2035.77Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAM7.110e-2035.77Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAC7.110e-2035.77Pyruvate dehydrogenase E1 component subunit beta O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01P06_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001P06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617980 ID=DN617980; Name=DN617980; organism=Citrus sinensis; type=EST; length=590bp
TTTTTTTTTTTTTTTTTATCGCACAAAATTGCTAACAATCTTAATAAATA
AATATTCAAAGCAAAGCTGCTGAGAACTAACACTGCATAGATAGATTCGG
TTATGACACTTCGGTATTCAAAAACTATTGGCAAAGCTGCTCAACTGCTG
TCACAATCTGGGCAGGTTGAACCACAGTCCATTCCTCCAATGTGCCGGCA
TATGGAGTTGGCACGTCCTGTGATGATAAGCATACAATAGGAGCATCCAA
GTAATCATGGAAATTCTCAGTGATAGCTGCAGTTAAACTAGCACCAATTC
CACCAGTCCGCATGCACTCCTCCACAATCAGTACACGATGTGTCTTTTTA
ATTGAATTTCCAATGGTATAAAGATCAAATGGTTTCAATGACCTGATGTC
AATAACCTCAGGATCATACCCTTTGTTTACCAAAGTTTTAGCAGCTTGCA
TCACATGATACCTCATTCGAGAATAGGTTAAAATAGTGACATGCTCCCCA
GGCCTAACCATCTCAGCTTCCTCAAGATTACAAATGTATTCCTCATCTGG
AATCCTTTCCTTGAGGTTGTAAAGCAACACATGCTCGAAA
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