DN617980

Overview
NameDN617980
Unique NameDN617980
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length590
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617980 vs. ExPASy Swiss-Prot
Match: ODPB_RAT (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Rattus norvegicus GN=Pdhb PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.027e-18
Identity = 51/155 (32.90%), Postives = 93/155 (60.00%), Query Frame = -2
Query:  137 EHVLLYNLKERIPDE----EYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITEN-FHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQ 586
            E+ L+Y +   +P E    +++  + +A++ R G H+T++ +SR   H ++AA  L  +G + EVI++R+++P D+  I  S+ KT+ ++ VE      G+GA + A I E    ++LDAP V ++  DVP PYA  LE+ ++ Q   I+ A+++
Sbjct:  201 ENELMYGVAFELPTEAQSKDFLIPIGKAKIERQGTHITVVAHSRPVGHCLEAAAVLSKEGIECEVINLRTIRPMDIEAIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNSIPQVKDIIFAIKK 355          
BLAST of DN617980 vs. ExPASy Swiss-Prot
Match: ODPB_BACSU (Pyruvate dehydrogenase E1 component subunit beta OS=Bacillus subtilis GN=pdhB PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 3.901e-18
Identity = 45/137 (32.85%), Postives = 82/137 (59.85%), Query Frame = -2
Query:  179 EHVLLY-NLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEW 586
            EH+ LY + ++ +P+EEY   L +A++ R G  ++I+TY  M +  ++AA  L   G   EV+D+R++ P D+ TI  S++KT R ++V+E  +  GI A++ A I +     L+AP++ +++ D   P++     W
Sbjct:  172 EHMKLYRSFRQEVPEEEYTIELGKADVKREGTDLSIITYGAMVHESLKAADELEKDGISAEVVDLRTVSPLDIDTIIASVEKTGRAIVVQEAQKQAGIAANVVAEINDRAILSLEAPVLRVAAPDTVFPFSQAESVW 308          
BLAST of DN617980 vs. ExPASy Swiss-Prot
Match: ODPB_ASCSU (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Ascaris suum PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.095e-18
Identity = 53/155 (34.19%), Postives = 89/155 (57.42%), Query Frame = -2
Query:  137 EHVLLYNLKERIPDE----EYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITE-NFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQ 586
            E+ +LY +K  +  E    +++    +A++ RPG+ +TI++ S      + AA  L   G D EVI++R ++P D  T+ +S+ KT  ++ VE      G+GA ++A +TE +   YLD PI+ ++  DVP PYA  LE   + QPA +V  V++
Sbjct:  202 ENEILYGMKFPVSPEAQSPDFVLPFGQAKIQRPGKDITIVSLSIGVDVSLHAADELAKSGIDCEVINLRCVRPLDFQTVKDSVIKTKHLVTVESGWPNCGVGAEISARVTESDAFGYLDGPILRVTGVDVPMPYAQPLETAALPQPADVVKMVKK 356          
BLAST of DN617980 vs. ExPASy Swiss-Prot
Match: ACOB_BACSU (Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta OS=Bacillus subtilis GN=acoB PE=3 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 6.655e-18
Identity = 48/152 (31.58%), Postives = 82/152 (53.95%), Query Frame = -2
Query:  134 FEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQL 589
            FE    YN+K  +P++ Y   L +A++ R G  VT+    +     ++AA  L  +G + EV+D RSL P D   I  S++KT+R++I++E      I   + A + +   D LDAPI  +++   P P++  LE+  +  P +IV+   +L
Sbjct:  184 FEDKTSYNMKGEVPEDYYTIPLGKADIKREGNDVTLFAVGKQVNTALEAAAQLSERGIEAEVLDPRSLSPLDEDAIFTSLEKTNRLIIIDEANPRCSIATDIAALVADKGFDLLDAPIKRITAPHTPVPFSPVLEDQYLPTPDKIVSVTLEL 335          
BLAST of DN617980 vs. ExPASy Swiss-Prot
Match: ODPB_YEAST (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Saccharomyces cerevisiae GN=PDB1 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.135e-17
Identity = 56/156 (35.90%), Postives = 89/156 (57.05%), Query Frame = -2
Query:  134 EHVLLYNLKERIPDEEYICNLE---EAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNK-GYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITEN-FHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQL 586
            E+ LLY     I +E          +A++ R G  ++I+TY+R     ++AA+ L  K G   EVI++RS++P D   I  ++KKT+ ++ VE    + G+GA + A + E+   DYLDAPI  ++  DVPTPYA  LE++       IV AV+++
Sbjct:  207 ENELLYGESFEISEEALSPEFTLPYKAKIEREGTDISIVTYTRNVQFSLEAAEILQKKYGVSAEVINLRSIRPLDTEAIIKTVKKTNHLITVESTFPSFGVGAEIVAQVMESEAFDYLDAPIQRVTGADVPTPYAKELEDFAFPDTPTIVKAVKEV 362          
BLAST of DN617980 vs. ExPASy Swiss-Prot
Match: ODPB_SCHPO (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Schizosaccharomyces pombe GN=pdb1 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.634e-17
Identity = 54/158 (34.18%), Postives = 91/158 (57.59%), Query Frame = -2
Query:  131 EHVLLYN----LKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTL-VNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITE-NFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLC 586
            E+ +LY     + +    E+++     A++ RPG+ +TI+  S      ++AA  L  + G + EVI++RS++P D+ TI  S+KKT+R++ V++     GIG+ + A I E +  DYLDAP+  +S  DVP PY+  +E  +V   A +V A  + C
Sbjct:  206 ENEILYGKTFPISKEALSEDFVLPFGLAKVERPGKDITIVGESISVVTALEAADKLKADYGVEAEVINLRSIRPLDINTIAASVKKTNRIVTVDQAYSQHGIGSEIAAQIMESDAFDYLDAPVERVSMADVPMPYSHPVEAASVPN-ADVVVAAAKKC 362          
BLAST of DN617980 vs. ExPASy Swiss-Prot
Match: ODBB_THET2 (2-oxoisovalerate dehydrogenase subunit beta OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=TT_C1756 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.634e-17
Identity = 44/127 (34.65%), Postives = 74/127 (58.27%), Query Frame = -2
Query:  197 LLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYA 577
            L  ++KE +P+E+Y  ++ +A + R G+ +T++ Y  +   V+QAA  L   G   EV+D+R+L P+D   + NS+ KT RV++V +  R     + + A I E+  D L AP + ++  D P PYA
Sbjct:  176 LYRSVKEEVPEEDYTLSIGKAALRREGKDLTLIGYGTVMPEVLQAAAELAKAGVSAEVLDLRTLMPWDYEAVMNSVAKTGRVVLVSDAPRHASFVSEVAATIAEDLLDMLLAPPIRVTGFDTPYPYA 302          
BLAST of DN617980 vs. ExPASy Swiss-Prot
Match: ODBB_THET8 (2-oxoisovalerate dehydrogenase subunit beta OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=TTHA0230 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.255e-16
Identity = 44/127 (34.65%), Postives = 73/127 (57.48%), Query Frame = -2
Query:  197 LLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYA 577
            L  ++KE +P+E+Y   + +A + R G+ +T++ Y  +   V+QAA  L   G   EV+D+R+L P+D   + NS+ KT RV++V +  R     + + A I E+  D L AP + ++  D P PYA
Sbjct:  176 LYRSVKEEVPEEDYTLPIGKAALRREGKDLTLIGYGTVMPEVLQAAAELAKAGVSAEVLDLRTLMPWDYEAVMNSVAKTGRVVLVSDAPRHASFVSEVAATIAEDLLDMLLAPPIRVTGFDTPYPYA 302          
BLAST of DN617980 vs. ExPASy Swiss-Prot
Match: ODBB_DICDI (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Dictyostelium discoideum GN=bkdB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.418e-14
Identity = 46/131 (35.11%), Postives = 75/131 (57.25%), Query Frame = -2
Query:  203 FEHVLLY-NLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNK-GYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTP 589
            FE  L+Y +  E +P  +Y   L +A +V+ G+ +TI+ +      ++QA      K G   E+ID+R+++P+D+ T+  S+KKT RV+I  E  +TGG  A ++A I E    +L+API  +   D P P
Sbjct:  216 FEPKLMYRSAVEEVPIGDYEIPLGKARIVKEGKDITIIGWGAQMRVLLQAVNMAEEKLGISCELIDLRTIQPWDVETVVESVKKTGRVVISHEAPKTGGWAAEISATIQERCFLHLEAPIQRVCGYDTPFP 346          
BLAST of DN617980 vs. ExPASy Swiss-Prot
Match: ODPB_ACHLA (Pyruvate dehydrogenase E1 component subunit beta OS=Acholeplasma laidlawii GN=pdhB PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.935e-13
Identity = 42/145 (28.97%), Postives = 78/145 (53.79%), Query Frame = -2
Query:  128 KERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLCQ 562
            K+ +P E Y   + +A++V+ G  +T++ +  +   V +A K +  +G   E+ID+R++ P D  TI NS+KKT + ++V E +++ G  A L   + E    +L+A  V  +  D+  P A   E +   QP +I   + +L +
Sbjct:  181 KQEVPAEMYEIPIGKAKVVKQGTDMTVVAWGSIVREVEKAVKLVEAEGISVEIIDLRTISPIDEETILNSVKKTGKFMVVTEAVKSYGPAAELITMVNEKAFFHLEAAPVRFTGFDITVPLARG-EHYHFPQPEKIAAYIRKLAK 324          
The following BLAST results are available for this feature:
BLAST of DN617980 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
ODPB_RAT1.027e-1832.90Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_BACSU3.901e-1832.85Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_ASCSU5.095e-1834.19Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ACOB_BACSU6.655e-1831.58Acetoin:2,6-dichlorophenolindophenol oxidoreductas... [more]
ODPB_YEAST1.135e-1735.90Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_SCHPO5.634e-1734.18Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODBB_THET25.634e-1734.652-oxoisovalerate dehydrogenase subunit beta OS=The... [more]
ODBB_THET81.255e-1634.652-oxoisovalerate dehydrogenase subunit beta OS=The... [more]
ODBB_DICDI3.418e-1435.112-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODPB_ACHLA4.935e-1328.97Pyruvate dehydrogenase E1 component subunit beta O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01P06_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001P06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617980 ID=DN617980; Name=DN617980; organism=Citrus sinensis; type=EST; length=590bp
TTTTTTTTTTTTTTTTTATCGCACAAAATTGCTAACAATCTTAATAAATA
AATATTCAAAGCAAAGCTGCTGAGAACTAACACTGCATAGATAGATTCGG
TTATGACACTTCGGTATTCAAAAACTATTGGCAAAGCTGCTCAACTGCTG
TCACAATCTGGGCAGGTTGAACCACAGTCCATTCCTCCAATGTGCCGGCA
TATGGAGTTGGCACGTCCTGTGATGATAAGCATACAATAGGAGCATCCAA
GTAATCATGGAAATTCTCAGTGATAGCTGCAGTTAAACTAGCACCAATTC
CACCAGTCCGCATGCACTCCTCCACAATCAGTACACGATGTGTCTTTTTA
ATTGAATTTCCAATGGTATAAAGATCAAATGGTTTCAATGACCTGATGTC
AATAACCTCAGGATCATACCCTTTGTTTACCAAAGTTTTAGCAGCTTGCA
TCACATGATACCTCATTCGAGAATAGGTTAAAATAGTGACATGCTCCCCA
GGCCTAACCATCTCAGCTTCCTCAAGATTACAAATGTATTCCTCATCTGG
AATCCTTTCCTTGAGGTTGTAAAGCAACACATGCTCGAAA
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