DN617980

Overview
NameDN617980
Unique NameDN617980
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length590
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617980 vs. ExPASy Swiss-Prot
Match: ODBB_RAT (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Rattus norvegicus GN=Bckdhb PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 6.446e-13
Identity = 43/132 (32.58%), Postives = 72/132 (54.55%), Query Frame = -2
Query:  200 FEHVLLYNLK-ERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNK-GYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPY 589
            FE  +LY    E++P E Y   L +AE+++ G  VT++ +    + + + A     K G   EVID+R++ P+D+ T+  S+ KT R+LI  E   TGG  + +++ + E     L+API  +   D P P+
Sbjct:  236 FEPKILYRAAVEQVPVEPYKIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAQEKLGVSCEVIDLRTIVPWDVDTVCKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPFPH 367          
BLAST of DN617980 vs. ExPASy Swiss-Prot
Match: ODBB_MOUSE (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Mus musculus GN=Bckdhb PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 6.446e-13
Identity = 43/132 (32.58%), Postives = 72/132 (54.55%), Query Frame = -2
Query:  200 FEHVLLYNLK-ERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNK-GYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPY 589
            FE  +LY    E++P E Y   L +AE+++ G  VT++ +    + + + A     K G   EVID+R++ P+D+ T+  S+ KT R+LI  E   TGG  + +++ + E     L+API  +   D P P+
Sbjct:  236 FEPKILYRAAVEQVPVEPYKIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAQEKLGVSCEVIDLRTIVPWDVDTVCKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPFPH 367          
BLAST of DN617980 vs. ExPASy Swiss-Prot
Match: ODBB_HUMAN (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Homo sapiens GN=BCKDHB PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 8.418e-13
Identity = 44/132 (33.33%), Postives = 71/132 (53.79%), Query Frame = -2
Query:  200 FEHVLLYNLK-ERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNK-GYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPY 589
            FE  +LY    E +P E Y   L +AE+++ G  VT++ +    + + + A     K G   EVID+R++ P+D+ TI  S+ KT R+LI  E   TGG  + +++ + E     L+API  +   D P P+
Sbjct:  238 FEPKILYRAAAEEVPIEPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAKEKLGVSCEVIDLRTIIPWDVDTICKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPFPH 369          
BLAST of DN617980 vs. ExPASy Swiss-Prot
Match: ODBB_BOVIN (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Bos taurus GN=BCKDHB PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.099e-12
Identity = 42/132 (31.82%), Postives = 72/132 (54.55%), Query Frame = -2
Query:  200 FEHVLLYNLK-ERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNK-GYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPY 589
            FE  +LY    E++P E Y   L +AE+++ G  VT++ +    + + + A     K G   EVID+R++ P+D+ T+  S+ KT R+L+  E   TGG  + +++ + E     L+API  +   D P P+
Sbjct:  238 FEPKILYRAAVEQVPVEPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVAAMAQEKLGVSCEVIDLRTILPWDVDTVCKSVIKTGRLLVSHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPFPH 369          
BLAST of DN617980 vs. ExPASy Swiss-Prot
Match: ODPB_MYCGE (Pyruvate dehydrogenase E1 component subunit beta OS=Mycoplasma genitalium GN=pdhB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.875e-12
Identity = 44/153 (28.76%), Postives = 80/153 (52.29%), Query Frame = -2
Query:  134 FEHVLLYN-LKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQL 589
            FE   LY   ++ IP + Y   + EA ++  G  +TI++Y    + ++    +   K    E+ID+R++ P+D  T+ NS+KKT R+L+V E +++    A +  ++TE    YL      ++  D+  P A   E++     A+++ AV QL
Sbjct:  173 FEPKKLYRAFRQEIPSDYYTVPIGEANLISEGSELTIVSYGPTMFDLINLVYSGELKDKGIELIDLRTISPWDKQTVFNSVKKTGRLLVVTEAVKSFTTSAEIITSVTEELFTYLKKAPQRVTGFDIVVPLARG-EKYQFEINARVIDAVNQL 324          
BLAST of DN617980 vs. ExPASy Swiss-Prot
Match: ODPB_MYCPN (Pyruvate dehydrogenase E1 component subunit beta OS=Mycoplasma pneumoniae GN=pdhB PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.449e-12
Identity = 46/153 (30.07%), Postives = 79/153 (51.63%), Query Frame = -2
Query:  134 FEHVLLYN-LKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQL 589
            FE   LY   ++ IP + Y   + +A ++  G ++TI++Y    + ++        K    E+ID+R++ P+D  T+ NS+KKT R+L+V E  +T      + A++TE    YL A    ++  D+  P A   E +     A+I+ AV QL
Sbjct:  174 FEPKKLYRAFRQEIPADYYTVPIGQANLISQGNNLTIVSYGPTMFDLINMVYGGELKDKGIELIDLRTISPWDKETVFNSVKKTGRLLVVTEAAKTFTTSGEIIASVTEELFSYLKAAPQRVTGWDIVVPLARG-EHYQFNLNARILEAVNQL 325          
The following BLAST results are available for this feature:
BLAST of DN617980 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
ODBB_RAT6.446e-1332.582-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODBB_MOUSE6.446e-1332.582-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODBB_HUMAN8.418e-1333.332-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODBB_BOVIN1.099e-1231.822-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODPB_MYCGE1.875e-1228.76Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_MYCPN2.449e-1230.07Pyruvate dehydrogenase E1 component subunit beta O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01P06_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001P06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617980 ID=DN617980; Name=DN617980; organism=Citrus sinensis; type=EST; length=590bp
TTTTTTTTTTTTTTTTTATCGCACAAAATTGCTAACAATCTTAATAAATA
AATATTCAAAGCAAAGCTGCTGAGAACTAACACTGCATAGATAGATTCGG
TTATGACACTTCGGTATTCAAAAACTATTGGCAAAGCTGCTCAACTGCTG
TCACAATCTGGGCAGGTTGAACCACAGTCCATTCCTCCAATGTGCCGGCA
TATGGAGTTGGCACGTCCTGTGATGATAAGCATACAATAGGAGCATCCAA
GTAATCATGGAAATTCTCAGTGATAGCTGCAGTTAAACTAGCACCAATTC
CACCAGTCCGCATGCACTCCTCCACAATCAGTACACGATGTGTCTTTTTA
ATTGAATTTCCAATGGTATAAAGATCAAATGGTTTCAATGACCTGATGTC
AATAACCTCAGGATCATACCCTTTGTTTACCAAAGTTTTAGCAGCTTGCA
TCACATGATACCTCATTCGAGAATAGGTTAAAATAGTGACATGCTCCCCA
GGCCTAACCATCTCAGCTTCCTCAAGATTACAAATGTATTCCTCATCTGG
AATCCTTTCCTTGAGGTTGTAAAGCAACACATGCTCGAAA
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