DN617969

Overview
NameDN617969
Unique NameDN617969
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length431
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DN617969 vs. ExPASy Swiss-Prot
Match: RD23A_BOVIN (UV excision repair protein RAD23 homolog A OS=Bos taurus GN=RAD23A PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.715e-11
Identity = 33/66 (50.00%), Postives = 46/66 (69.70%), Query Frame = -1 
Query:  228 GEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 425
            GE   +G+ A  M   + VTP+E+EAIERL+A+GF  +LV++ +FAC KNE LAAN+LL    + E
Sbjct:  298 GEVGAIGEEAPQM-NYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFDDE 362
[Close]
BLAST of DN617969 vs. ExPASy Swiss-Prot
Match: RD23B_HUMAN (UV excision repair protein RAD23 homolog B OS=Homo sapiens GN=RAD23B PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 8.043e-11
Identity = 31/60 (51.67%), Postives = 42/60 (70.00%), Query Frame = -1 
Query:  249 GGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 428
            GG G +  +  S     + VTP+E+EAIERL+A+GF   LV++ +FAC KNE LAAN+LL
Sbjct:  344 GGSGGI-AEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 402
The following BLAST results are available for this feature:
BLAST of DN617969 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
RD23A_BOVIN4.715e-1150.00UV excision repair protein RAD23 homolog A OS=Bos ... [more]
RD23B_HUMAN8.043e-1151.67UV excision repair protein RAD23 homolog B OS=Homo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01O23_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001O23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617969 ID=DN617969; Name=DN617969; organism=Citrus sinensis; type=EST; length=431bp
GCGTATGATAATTTATAACCAAACATCTTAAGAGAAATAAATAGAGAAAA
TGTTAGCGTCCAAGGATAAACTAGCGACATGAACATCTTGACAAGTGTTC
TCCAGACTCCACAGAGCATATAGTTGGTATAAGACACTGTTTAACCACAA
GAGTATATGCACCCAACATGGAAAAGGAAAAAAAAAAAAAAAGGGGGAGA
ACAAGAAAAGGGTGACTTCAATCAATCCTCAAACTCATGCATGTGATCTA
AGAGATAGTTGGCTGCCAACTCCTCATTCTTGTTGCAAGCAAAGAACACT
TCCAACACTAGGGCACGATCAAAGCCCATTGCTTCAAGACGCTCGATAGC
TTCTCTCTCCTCAGGGGTTACAGTCACAGCCTGTGGCATTGCTGAGGCCA
ACTGACCCAGTACATTCCCCTCTCCTCCTTC
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