DN617925

Overview
NameDN617925
Unique NameDN617925
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length658
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617925 vs. ExPASy Swiss-Prot
Match: EXP11_ORYSJ (Expansin-A11 OS=Oryza sativa subsp. japonica GN=EXPA11 PE=2 SV=2)

HSP 1 Score: 210.69 bits (535), Expect = 5.480e-54
Identity = 92/129 (71.32%), Postives = 111/129 (86.05%), Query Frame = -3
Query:  270 LSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 656
            L+ D GGWCNPP  HFDMAEPAF +IAQ RAG+VP+ +RR+ CAK+GGIRFT+ GHSYFNLVL+TNVGGAGDV +VS+KGS++GWQAMS NWG NWQ+ + L+GQ LSF++TASDGRTVTS+NV P  W
Sbjct:  109 LAGDAGGWCNPPRPHFDMAEPAFTRIAQARAGVVPVQYRRVACAKQGGIRFTITGHSYFNLVLVTNVGGAGDVTAVSVKGSRSGWQAMSHNWGANWQNGANLDGQPLSFRVTASDGRTVTSDNVAPSGW 237          
BLAST of DN617925 vs. ExPASy Swiss-Prot
Match: EXP16_ARATH (Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.033e-52
Identity = 90/127 (70.87%), Postives = 107/127 (84.25%), Query Frame = -3
Query:  270 NDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 650
            +DNGGWCNPP  HFD+A P FL+IA+YRAGIVPIS+RR+ C K GGIRFT+NGH YFNLVLITNV GAGD+   S+KGSKTGW +++RNWGQNWQSN+ L GQSLSF++T+SD RT TS N+ P NW
Sbjct:  121 SDNGGWCNPPRSHFDLAMPVFLKIAEYRAGIVPISYRRVACRKSGGIRFTINGHRYFNLVLITNVAGAGDIARTSVKGSKTGWMSLTRNWGQNWQSNAVLVGQSLSFRVTSSDRRTSTSWNIAPSNW 247          
BLAST of DN617925 vs. ExPASy Swiss-Prot
Match: EXPA9_ARATH (Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.763e-52
Identity = 90/128 (70.31%), Postives = 107/128 (83.59%), Query Frame = -3
Query:  270 SNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 653
            ++DNGGWCNPP +HFD+A P FL IA+Y+AGIVP+S+RRIPC KKGGIRFT+NG  YFNLVL+TNV GAGDV  VS+KGS T W  +SRNWGQNWQSN+ L GQSLSF++  SDGR+ TSNN+ P NW
Sbjct:  118 ASDNGGWCNPPREHFDLAMPMFLSIAKYKAGIVPVSYRRIPCRKKGGIRFTINGFKYFNLVLVTNVAGAGDVIKVSVKGSNTQWLDLSRNWGQNWQSNALLVGQSLSFRVKTSDGRSSTSNNIAPSNW 245          
BLAST of DN617925 vs. ExPASy Swiss-Prot
Match: EXPA6_ORYSJ (Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXPA6 PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.763e-52
Identity = 90/135 (66.67%), Postives = 115/135 (85.19%), Query Frame = -3
Query:  270 LSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTG------WQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 656
            L +D GGWCNPP +HFD+AEPAFL+IA++ AGIVP+SFRR+ CA+KGG+RFTVNGH+YFNLVL+TNVGGAGDV S+++KGS +G      WQ MSRNWGQNWQSN+YL+G++LSF++TA DGR++T  +V P  W
Sbjct:  114 LPSDGGGWCNPPRRHFDLAEPAFLRIARHAAGIVPVSFRRVACARKGGVRFTVNGHAYFNLVLVTNVGGAGDVRSLAVKGSGSGSRVGGRWQPMSRNWGQNWQSNAYLDGKALSFRVTAGDGRSLTCADVAPAGW 248          
BLAST of DN617925 vs. ExPASy Swiss-Prot
Match: EXPA1_ORYSJ (Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXPA1 PE=2 SV=2)

HSP 1 Score: 202.601 bits (514), Expect = 1.492e-51
Identity = 87/129 (67.44%), Postives = 108/129 (83.72%), Query Frame = -3
Query:  270 LSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 656
            L ND GGWCNPP QHFDMAEPA+L+I  Y  GIVP+ ++R+PCAK+GG+RFT+NG  YF LVL++NVGG G + SVSIKGS+TGW AMSRNWG NWQSN+YL+GQSLSF++T+SDG+T+T  +V P  W
Sbjct:  120 LPNDAGGWCNPPRQHFDMAEPAWLKIGVYVGGIVPVMYQRVPCAKQGGVRFTINGRDYFELVLVSNVGGVGSIQSVSIKGSRTGWMAMSRNWGVNWQSNAYLDGQSLSFKVTSSDGQTLTFLDVAPAGW 248          
BLAST of DN617925 vs. ExPASy Swiss-Prot
Match: EXPA7_ORYSJ (Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.324e-51
Identity = 89/129 (68.99%), Postives = 103/129 (79.84%), Query Frame = -3
Query:  270 LSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 656
            L +DNGGWCNPP  HFD+A P FL IA+YRAGIVP+S+RR+PC KKGG+RFT+NG  YFNLVLITNV GAGD+   S+KG+ TGW  MSRNWGQNWQSNS L GQ+LSF++T SD RT TS N  P  W
Sbjct:  123 LPSDNGGWCNPPRPHFDLAMPMFLHIAEYRAGIVPVSYRRVPCRKKGGVRFTINGFRYFNLVLITNVAGAGDIVRASVKGTSTGWMPMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNAAPAGW 251          
BLAST of DN617925 vs. ExPASy Swiss-Prot
Match: EXPA5_ORYSJ (Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 7.406e-51
Identity = 86/130 (66.15%), Postives = 110/130 (84.62%), Query Frame = -3
Query:  270 LSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKT-GWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 656
            L +D+GGWCNPP  HFDM++P F +IA ++AGIVP+S+RR+ C KKGGIRFT+NGHSYFNLVL+TNVGGAGDVH+V++K  ++  WQA+SRNWGQNWQS + L+GQ+LSF++T  DGR+V SNN VP  W
Sbjct:  150 LPSDDGGWCNPPRAHFDMSQPVFQRIALFKAGIVPVSYRRVACQKKGGIRFTINGHSYFNLVLVTNVGGAGDVHAVAVKSERSAAWQALSRNWGQNWQSAALLDGQALSFRVTTGDGRSVVSNNAVPRGW 279          
BLAST of DN617925 vs. ExPASy Swiss-Prot
Match: EXPA6_ARATH (Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 SV=2)

HSP 1 Score: 198.749 bits (504), Expect = 2.155e-50
Identity = 86/127 (67.72%), Postives = 105/127 (82.68%), Query Frame = -3
Query:  270 NDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 650
            +DNGGWCNPP  HFD+A P FL+IA+YRAGIVP+SFRR+PC K+GGIRFT+NG  YFNLVL+TNV GAG++  + +KG+ T W  MSRNWGQNWQSNS L GQSLSF++T+SD R+ TS N+ P NW
Sbjct:  118 SDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSFRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGNIVRLGVKGTHTSWMTMSRNWGQNWQSNSVLVGQSLSFRVTSSDRRSSTSWNIAPANW 244          
BLAST of DN617925 vs. ExPASy Swiss-Prot
Match: EXPA3_ARATH (Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.155e-50
Identity = 89/127 (70.08%), Postives = 105/127 (82.68%), Query Frame = -3
Query:  270 NDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 650
            +D+GGWCNPP +HFD+A P FL+I  YRAGIVP+S+RR+PC K GGIRFTVNG  YFNLVL+TNV GAGD++ VS+KGSKT W  MSRNWGQNWQSN+ L GQSLSF++TASD R+ TS NV P  W
Sbjct:  123 SDDGGWCNPPREHFDLAMPMFLKIGLYRAGIVPVSYRRVPCRKIGGIRFTVNGFRYFNLVLVTNVAGAGDINGVSVKGSKTDWVRMSRNWGQNWQSNAVLIGQSLSFRVTASDRRSSTSWNVAPATW 249          
BLAST of DN617925 vs. ExPASy Swiss-Prot
Match: EXP21_ORYSJ (Expansin-A21 OS=Oryza sativa subsp. japonica GN=EXPA21 PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.069e-49
Identity = 84/132 (63.64%), Postives = 109/132 (82.58%), Query Frame = -3
Query:  270 LSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIK---GSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 656
            L  D GGWCNPPL HFD+++PAFL+IA++++GIVP+S+RR+ C +KGG+RFT+NGHSYFNLVL++NVGGAGDVH+V++K   G K  WQAM+RNWGQNWQS + L+GQ+LSF +T  D R+V S NV P  W
Sbjct:  121 LPGDRGGWCNPPLHHFDLSQPAFLRIARFQSGIVPVSYRRVACRRKGGMRFTINGHSYFNLVLVSNVGGAGDVHAVAVKAGGGRKARWQAMARNWGQNWQSGALLDGQALSFTVTTGDRRSVVSYNVAPAGW 252          
The following BLAST results are available for this feature:
BLAST of DN617925 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
EXP11_ORYSJ5.480e-5471.32Expansin-A11 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP16_ARATH1.033e-5270.87Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=... [more]
EXPA9_ARATH1.763e-5270.31Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 ... [more]
EXPA6_ORYSJ1.763e-5266.67Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA1_ORYSJ1.492e-5167.44Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA7_ORYSJ3.324e-5168.99Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA5_ORYSJ7.406e-5166.15Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA6_ARATH2.155e-5067.72Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 ... [more]
EXPA3_ARATH2.155e-5070.08Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 ... [more]
EXP21_ORYSJ1.069e-4963.64Expansin-A21 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01N23_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001N23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617925 ID=DN617925; Name=DN617925; organism=Citrus sinensis; type=EST; length=658bp
TTTTTTTTTTGAATGAAATTATACCCGTTCATTCAATTGAAGTAATAACT
ATATATAGAACACAATCATTTCTATTTATAGAGGCCTAGCGGGTGCCAAC
AGACCACCACAGCAACAAGACAGGCCACATCGGCCAGGCCTGAGCCTCAC
CTACCCCTATTCTCACCCTTCCTCCCTCACAAACAGTGCCAAATTCAATT
AAATATACAAATTCTGATTCACTTTTTTAAAATCTAAAACTGACCACCCT
CAAAGGTTTGCCCAAATTGCCAATTTCCAGGCACAACATTGTTGCTAGTC
ACAGTCCTGCCGTCACTGGCTGTCAATTGGAAAGAAAGACTTTGGCCGTT
AAGATAAGAATTGCTCTGCCAATTTTGGCCCCAGTTCCTTGACATTGCTT
GCCATCCAGTCTTTGAACCCTTGATTGATACTGAATGTACATCTCCTGCT
CCTCCGACATTTGTGATCAAAACCAGGTTGAAGTATGAGTGTCCATTGAC
GGTAAACCTTATTCCTCCTTTCTTCGCACACGGGATCCTTCTGAAGGAAA
TTGGGACGATACCGGCGCGGTATTGGGCAATTTGCAAGAAAGCGGGCTCA
GCCATGTCAAAGTGCTGGAGGGGAGGATTGCACCAACCGCCGTTGTCGTT
AGACAGGG
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