DN617925

Overview
NameDN617925
Unique NameDN617925
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length658
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617925 vs. ExPASy Swiss-Prot
Match: EXP18_ORYSJ (Expansin-A18 OS=Oryza sativa subsp. japonica GN=EXPA18 PE=2 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 2.313e-36
Identity = 65/124 (52.42%), Postives = 91/124 (73.39%), Query Frame = -3
Query:  270 GGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 641
            GGWCN    HFDM++PA+  I  Y AGIVPI ++++ C + GG+RFT+ G +YF LVL+TN+ G+G + S+S+KGS TGW  MSRNWG NWQ  + L GQ+LSF +T++ G+T+  ++VVP  W
Sbjct:  112 GGWCNTTRPHFDMSQPAWENIGIYSAGIVPILYQQVKCWRSGGVRFTITGLNYFELVLVTNMAGSGSIASMSVKGSSTGWIQMSRNWGANWQCLAGLAGQALSFTVTSTGGQTIVFDSVVPAGW 235          
BLAST of DN617925 vs. ExPASy Swiss-Prot
Match: EXP13_ARATH (Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 3.021e-36
Identity = 71/126 (56.35%), Postives = 91/126 (72.22%), Query Frame = -3
Query:  270 DNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 647
            D GG CNPP +HF +   AF +IA ++AG +P+ +RRI C K+G +RFTV+G   F  VLITNV G+GD+ +V IKGS+TGW  M RNWGQNW  N+ L  Q+LSF++T+SD  TVTS NV P NW
Sbjct:  127 DGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRINCRKEGSMRFTVDGGGIFISVLITNVAGSGDIAAVKIKGSRTGWLPMGRNWGQNWHINADLRNQALSFEVTSSDRSTVTSYNVSPKNW 252          
BLAST of DN617925 vs. ExPASy Swiss-Prot
Match: EXP19_ORYSJ (Expansin-A19 OS=Oryza sativa subsp. japonica GN=EXPA19 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.153e-36
Identity = 63/124 (50.81%), Postives = 91/124 (73.39%), Query Frame = -3
Query:  270 GGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 641
            GGWCN    HFDM++PA+  I  Y AGI+PI ++++ C + GG+RFT+NG +YF LVL+TN+ G+G + S+S+KGS TGW  M+RNWG NWQ  + L GQ+LSF +T++ G+T+  ++ VP  W
Sbjct:  112 GGWCNATRPHFDMSQPAWENIGIYNAGIIPILYQQVKCWRYGGVRFTINGFNYFELVLVTNMAGSGSIASMSVKGSCTGWIQMTRNWGANWQCLAGLAGQALSFNVTSTGGQTIVFDDAVPAGW 235          
BLAST of DN617925 vs. ExPASy Swiss-Prot
Match: EXP20_ORYSJ (Expansin-A20 OS=Oryza sativa subsp. japonica GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.658e-34
Identity = 62/124 (50.00%), Postives = 90/124 (72.58%), Query Frame = -3
Query:  270 GGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 641
            GGWCN    +FDM++PA+  I  Y AGIVPI ++++ C + GG+RF +NG +YF LVL+TN+ G+G + S+S+KGS TGW  M+RNWG NWQ  + L GQ+LSF +T++ G+T+  ++ VP  W
Sbjct:  103 GGWCNATRPYFDMSQPAWENIGIYSAGIVPILYQQVKCWRYGGVRFIINGFNYFELVLVTNMAGSGSIVSMSVKGSCTGWIQMTRNWGANWQCLAGLAGQALSFNVTSTGGQTIVFDDAVPAGW 226          
BLAST of DN617925 vs. ExPASy Swiss-Prot
Match: EXP20_ARATH (Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.074e-33
Identity = 64/129 (49.61%), Postives = 91/129 (70.54%), Query Frame = -3
Query:  270 LSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 656
            LS+D GGWCN P +H +++  AF  IA+ RA ++PI +RR+ C ++GG+RF+++G S+F  VLI+NVG  G+V  V +KG  T W  M+RNWGQNW S+  L GQSLSF++T   G+T+ S +V P  W
Sbjct:  115 LSSDYGGWCNFPKEHLELSHAAFTGIAETRAEMIPIQYRRVKCGRRGGLRFSLSGSSHFFQVLISNVGLDGEVVGVKVKGHTTAWIPMARNWGQNWHSSLDLIGQSLSFEVTLKGGKTIASYDVAPPYW 243          
BLAST of DN617925 vs. ExPASy Swiss-Prot
Match: EXP21_ARATH (Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=2 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 4.083e-33
Identity = 63/122 (51.64%), Postives = 86/122 (70.49%), Query Frame = -3
Query:  270 WCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 635
            WC  P +HFD++ P F++IAQ +A +VP+ +RR+PCAK GG++F V G+     +L  NVGGAGD+ +VS KGSKT W  MSR WGQNW +N  L GQS+S ++T SDG T    +V+P +W
Sbjct:  129 WCYLPNKHFDLSLPMFIKIAQVKAKMVPVRYRRVPCAKTGGVKFEVKGNPNILTILPYNVGGAGDIIAVSAKGSKTAWVVMSRYWGQNWTTNVNLTGQSVSLRVTTSDGITKDFTDVMPASW 250          
BLAST of DN617925 vs. ExPASy Swiss-Prot
Match: EXP30_ORYSJ (Putative expansin-A30 OS=Oryza sativa subsp. japonica GN=EXPA30 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.332e-33
Identity = 61/126 (48.41%), Postives = 92/126 (73.02%), Query Frame = -3
Query:  270 GGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIK-GSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTA-SDGRTVTSNNVVPGNW 641
            GGWCNPP  HFD+++PAF+++A +RAGIVP+ +RR+PCA+ GG+RF + G+ Y+ L  + NV GAGDV  + +K G   GW  MS NWG ++Q+ + L GQ+LSF++T+ + G+T+ +  V P +W
Sbjct:  128 GGWCNPPRAHFDLSKPAFMRMADWRAGIVPVMYRRVPCARAGGLRFALQGNPYWLLAYVMNVAGAGDVGDMWVKAGGGGGWVRMSHNWGASYQAFAQLGGQALSFKVTSYTTGQTILAAGVTPASW 253          
BLAST of DN617925 vs. ExPASy Swiss-Prot
Match: EXP26_ORYSJ (Expansin-A26 OS=Oryza sativa subsp. japonica GN=EXPA26 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.954e-28
Identity = 51/117 (43.59%), Postives = 84/117 (71.79%), Query Frame = -3
Query:  270 QHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSK-TGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 617
            +HFD+  PAFL IA+ + G+VP+S+R++ C ++GGI++T+ G+  +N+V++ NVGGAGDV  +++KG+K   W  + R+WGQ W++ + L G+SL+F++   D R  TS  V P +W
Sbjct:  162 EHFDLTMPAFLSIAEEKLGVVPVSYRKVACVRQGGIKYTITGNPSYNMVMVKNVGGAGDVVKLTVKGTKRVKWTPLQRSWGQLWKTEANLTGESLTFRVMTGDHRKATSWRVAPRDW 278          
BLAST of DN617925 vs. ExPASy Swiss-Prot
Match: EXP17_ORYSJ (Expansin-A17 OS=Oryza sativa subsp. japonica GN=EXPA17 PE=2 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 3.954e-28
Identity = 61/134 (45.52%), Postives = 89/134 (66.42%), Query Frame = -3
Query:  270 LSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTG--WQAMSRNWGQNWQSNSYL-NGQSLSFQLT--ASDGRTVTSNNVVPGNW 656
            L ND+GGWCNPP  HFDMA P+FL++AQ  AGIVP+ +RR+PC + GG+RF + G+ Y+ L+ + NVGGAGDV S+S+K S  G  W   + NWG  +Q  + L N   L+ +LT  ++  +T+  ++ +   W
Sbjct:  138 LPNDDGGWCNPPRHHFDMAPPSFLKLAQRVAGIVPVQYRRVPCQRTGGVRFCLQGNHYWLLLYVMNVGGAGDVSSLSVKTSGGGGAWIQAAHNWGITYQVFAALDNSDGLTVKLTTYSTPQQTIIVSDAISPWW 271          
BLAST of DN617925 vs. ExPASy Swiss-Prot
Match: EXPB5_ORYSJ (Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXPB5 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 5.543e-14
Identity = 44/138 (31.88%), Postives = 70/138 (50.72%), Query Frame = -3
Query:  270 GGWCNPPLQHFDMAEPAFLQIAQY-------RAGIVPISFRRIPCAKKGGIRFTVNGHS--YFNLVLITNVGGAGDVHSVSIKGSKTG--WQAMSRNWGQNWQSNSYLN---GQSLSFQLTASDGRTVTSNNVVPGNW 641
            GG C     HFDM+  AF  +A          AG++ I ++R+PC     + F V+  S  Y+  +L+    G GD+ +V I  ++ G  W+AM ++WG  W+ NS          S +LT+  G+ + +NNV+P  W
Sbjct:  124 GGVCLNEAAHFDMSGTAFGAMANRGMGDRLRSAGVLKIQYKRVPCRFAMNVAFKVDAGSNPYYLAILVQYANGDGDLAAVHIMEARGGGGWKAMQQSWGATWRLNSNTGKPLSPPFSIRLTSGSGKVLVANNVIPSGW 261          
The following BLAST results are available for this feature:
BLAST of DN617925 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
EXP18_ORYSJ2.313e-3652.42Expansin-A18 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP13_ARATH3.021e-3656.35Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=... [more]
EXP19_ORYSJ5.153e-3650.81Expansin-A19 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP20_ORYSJ1.658e-3450.00Expansin-A20 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP20_ARATH1.074e-3349.61Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=... [more]
EXP21_ARATH4.083e-3351.64Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=... [more]
EXP30_ORYSJ5.332e-3348.41Putative expansin-A30 OS=Oryza sativa subsp. japon... [more]
EXP26_ORYSJ3.954e-2843.59Expansin-A26 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP17_ORYSJ3.954e-2845.52Expansin-A17 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPB5_ORYSJ5.543e-1431.88Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXP... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01N23_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001N23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617925 ID=DN617925; Name=DN617925; organism=Citrus sinensis; type=EST; length=658bp
TTTTTTTTTTGAATGAAATTATACCCGTTCATTCAATTGAAGTAATAACT
ATATATAGAACACAATCATTTCTATTTATAGAGGCCTAGCGGGTGCCAAC
AGACCACCACAGCAACAAGACAGGCCACATCGGCCAGGCCTGAGCCTCAC
CTACCCCTATTCTCACCCTTCCTCCCTCACAAACAGTGCCAAATTCAATT
AAATATACAAATTCTGATTCACTTTTTTAAAATCTAAAACTGACCACCCT
CAAAGGTTTGCCCAAATTGCCAATTTCCAGGCACAACATTGTTGCTAGTC
ACAGTCCTGCCGTCACTGGCTGTCAATTGGAAAGAAAGACTTTGGCCGTT
AAGATAAGAATTGCTCTGCCAATTTTGGCCCCAGTTCCTTGACATTGCTT
GCCATCCAGTCTTTGAACCCTTGATTGATACTGAATGTACATCTCCTGCT
CCTCCGACATTTGTGATCAAAACCAGGTTGAAGTATGAGTGTCCATTGAC
GGTAAACCTTATTCCTCCTTTCTTCGCACACGGGATCCTTCTGAAGGAAA
TTGGGACGATACCGGCGCGGTATTGGGCAATTTGCAAGAAAGCGGGCTCA
GCCATGTCAAAGTGCTGGAGGGGAGGATTGCACCAACCGCCGTTGTCGTT
AGACAGGG
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