DN617920

Overview
NameDN617920
Unique NameDN617920
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length527
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617920 vs. ExPASy Swiss-Prot
Match: U2AF2_MOUSE (Splicing factor U2AF 65 kDa subunit OS=Mus musculus GN=U2af2 PE=1 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 7.523e-17
Identity = 42/102 (41.18%), Postives = 64/102 (62.75%), Query Frame = -2
Query:  218 PSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFGTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKFAQGDY 523
            P++V+CL  +V  +EL DDEEYEEI+ED+R E  K+G + ++ IPRP  +G   PG GK+F+E+  +    KA  G+ GRKF    VV  +   + + + D+
Sbjct:  374 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRP-VDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHRRDF 474          
BLAST of DN617920 vs. ExPASy Swiss-Prot
Match: U2AF2_HUMAN (Splicing factor U2AF 65 kDa subunit OS=Homo sapiens GN=U2AF2 PE=1 SV=4)

HSP 1 Score: 86.6557 bits (213), Expect = 7.523e-17
Identity = 42/102 (41.18%), Postives = 64/102 (62.75%), Query Frame = -2
Query:  218 PSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFGTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKFAQGDY 523
            P++V+CL  +V  +EL DDEEYEEI+ED+R E  K+G + ++ IPRP  +G   PG GK+F+E+  +    KA  G+ GRKF    VV  +   + + + D+
Sbjct:  374 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRP-VDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHRRDF 474          
BLAST of DN617920 vs. ExPASy Swiss-Prot
Match: UHMK1_PONAB (Serine/threonine-protein kinase Kist OS=Pongo abelii GN=UHMK1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.569e-14
Identity = 38/101 (37.62%), Postives = 67/101 (66.34%), Query Frame = -2
Query:  224 VPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFGTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKFAQG 526
            +P+ V+ L  V+  D L+++EEYE+++ED+++E  K+G +V++++P+ N      PG G+VF+EYA+   +  A+  + GR F G  VVA FYP + + +G
Sbjct:  318 LPTPVLRLLNVLDDDYLENEEEYEDVVEDVKEECQKYGPVVSLLVPKEN------PGRGQVFVEYANAGDSKAAQKLLTGRMFDGKFVVATFYPLSAYKRG 412          
BLAST of DN617920 vs. ExPASy Swiss-Prot
Match: UHMK1_HUMAN (Serine/threonine-protein kinase Kist OS=Homo sapiens GN=UHMK1 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.569e-14
Identity = 38/101 (37.62%), Postives = 67/101 (66.34%), Query Frame = -2
Query:  224 VPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFGTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKFAQG 526
            +P+ V+ L  V+  D L+++EEYE+++ED+++E  K+G +V++++P+ N      PG G+VF+EYA+   +  A+  + GR F G  VVA FYP + + +G
Sbjct:  318 LPTPVLRLLNVLDDDYLENEEEYEDVVEDVKEECQKYGPVVSLLVPKEN------PGRGQVFVEYANAGDSKAAQKLLTGRMFDGKFVVATFYPLSAYKRG 412          
BLAST of DN617920 vs. ExPASy Swiss-Prot
Match: UHMK1_RAT (Serine/threonine-protein kinase Kist OS=Rattus norvegicus GN=Uhmk1 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.495e-14
Identity = 37/101 (36.63%), Postives = 67/101 (66.34%), Query Frame = -2
Query:  224 VPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFGTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKFAQG 526
            +P+ V+ L  V+  D L++++EYE+++ED+++E  K+G +V++++P+ N      PG G+VF+EYA+   +  A+  + GR F G  VVA FYP + + +G
Sbjct:  318 LPTPVLRLLNVLDDDYLENEDEYEDVVEDVKEECQKYGPVVSLLVPKEN------PGRGQVFVEYANAGDSKAAQKLLTGRMFDGKFVVATFYPLSAYKRG 412          
BLAST of DN617920 vs. ExPASy Swiss-Prot
Match: UHMK1_MOUSE (Serine/threonine-protein kinase Kist OS=Mus musculus GN=Uhmk1 PE=1 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 3.495e-14
Identity = 37/101 (36.63%), Postives = 67/101 (66.34%), Query Frame = -2
Query:  224 VPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFGTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKFAQG 526
            +P+ V+ L  V+  D L++++EYE+++ED+++E  K+G +V++++P+ N      PG G+VF+EYA+   +  A+  + GR F G  VVA FYP + + +G
Sbjct:  318 LPTPVLRLLNVLDDDYLENEDEYEDVVEDVKEECQKYGPVVSLLVPKEN------PGRGQVFVEYANAGDSKAAQKLLTGRMFDGKFVVATFYPLSAYKRG 412          
BLAST of DN617920 vs. ExPASy Swiss-Prot
Match: U2AF2_SCHPO (Splicing factor U2AF 59 kDa subunit OS=Schizosaccharomyces pombe GN=prp2 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.272e-12
Identity = 34/96 (35.42%), Postives = 55/96 (57.29%), Query Frame = -2
Query:  239 VPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFGTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPEN 526
            +P++V+ L  +++ DE+ D +EYE+I E ++ +   +G L+++ IPR         G GKVF+ Y+DI  A  A   M G KF    +V  FY E+
Sbjct:  415 IPTRVLQLHNLITGDEIMDVQEYEDIYESVKTQFSNYGPLIDIKIPRSIGTRNSGLGTGKVFVRYSDIRSAEVAMEEMKGCKFNDRTIVIAFYGED 510          
The following BLAST results are available for this feature:
BLAST of DN617920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
U2AF2_MOUSE7.523e-1741.18Splicing factor U2AF 65 kDa subunit OS=Mus musculu... [more]
U2AF2_HUMAN7.523e-1741.18Splicing factor U2AF 65 kDa subunit OS=Homo sapien... [more]
UHMK1_PONAB1.569e-1437.62Serine/threonine-protein kinase Kist OS=Pongo abel... [more]
UHMK1_HUMAN1.569e-1437.62Serine/threonine-protein kinase Kist OS=Homo sapie... [more]
UHMK1_RAT3.495e-1436.63Serine/threonine-protein kinase Kist OS=Rattus nor... [more]
UHMK1_MOUSE3.495e-1436.63Serine/threonine-protein kinase Kist OS=Mus muscul... [more]
U2AF2_SCHPO4.272e-1235.42Splicing factor U2AF 59 kDa subunit OS=Schizosacch... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01N21_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001N21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617920 ID=DN617920; Name=DN617920; organism=Citrus sinensis; type=EST; length=527bp
ACACCAATAGATTATAGAACAGGGTCATCCATTATAGTTCGGAAACAGAA
TTATATTCATTATGACCTCTGAGAAAAAAGAATTAATTAAGAACTAAAAA
CCCAACACTGCAAGCTCTCCTCGAGAACATCACTGTACCCTAAAGCTAGA
TCTATTTGATAGAACATCAGGGGAGAGAATTCCACAAGTAATGCTAGAAA
AACAACTATTAGCCTTCATAATCCCCCTGGGCAAATTTGTTCTCTGGATA
AAATACAGCAACAACTTGATTTCCACCAAATTTTCTTCCGTTCATCCCTG
TTCGAGCTTTTGTAGCACCATCAATATCTGCATATTCTAAGAACACCTTC
CCAACTCCTGGTGATGGCTCGCCATTGGGATTTGGGCGCGGGATGATAAC
ATTCACCAATGTACCGAATTTTCCGCCTTCTTGTCTCATATCTTCCAAAA
TTTCTTCATACTCTTCATCATCTTTAAGCTCATCTGCAGAAACTACTTGA
GTTAAGCACACAACCTTCGAAGGAACT
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