DN617910

Overview
NameDN617910
Unique NameDN617910
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length565
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB5C_BOVIN (Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 5.898e-37
Identity = 77/150 (51.33%), Postives = 102/150 (68.00%), Query Frame = 2
Query:  110 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNV 559
            FK+VL+G+SAVGKS L+ RF + +F    ++TIG  F T+T+ +D  TVK +IWDTAGQERY ++   YYRGA  A++VYD+T   +F     W+ EL+  A  NIVI L GNK DL S RAV  ++AQ +A+  +L FMETSA  A NV
Sbjct:   22 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYAEDNSLLFMETSAKTAMNV 171          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB13_HUMAN (Ras-related protein Rab-13 OS=Homo sapiens GN=RAB13 PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 7.703e-37
Identity = 68/154 (44.16%), Postives = 110/154 (71.43%), Query Frame = 2
Query:  101 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            D++FK++LIGDS VGK+ L+ RFA + F+    +TIG++F+ +T+ I+ K +K Q+WDTAGQER++ +T+AYYRGA+G +LVYD+T  +SF+++  W+  ++ +A   +  +L+GNKCD+ + R V  E A + A+   + F ETSA  + NV+
Sbjct:    6 DHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVD 159          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB13_BOVIN (Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 7.703e-37
Identity = 68/154 (44.16%), Postives = 110/154 (71.43%), Query Frame = 2
Query:  101 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            D++FK++LIGDS VGK+ L+ RFA + F+    +TIG++F+ +T+ I+ K +K Q+WDTAGQER++ +T+AYYRGA+G +LVYD+T  +SF+++  W+  ++ +A   +  +L+GNKCD+ + R V  E A + A+   + F ETSA  + NV+
Sbjct:    6 DHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFRIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVD 159          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB5C_PONAB (Ras-related protein Rab-5C OS=Pongo abelii GN=RAB5C PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.006e-36
Identity = 77/150 (51.33%), Postives = 101/150 (67.33%), Query Frame = 2
Query:  110 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNV 559
            FK+VL+G+SAVGKS L+ RF + +F    ++TIG  F T+T+ +D  TVK +IWDTAGQERY ++   YYRGA  A++VYD+T   +F     W+ EL+  A  NIVI L GNK DL S RAV  ++AQ +A   +L FMETSA  A NV
Sbjct:   22 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNV 171          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB5C_MOUSE (Ras-related protein Rab-5C OS=Mus musculus GN=Rab5c PE=1 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.006e-36
Identity = 77/150 (51.33%), Postives = 101/150 (67.33%), Query Frame = 2
Query:  110 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNV 559
            FK+VL+G+SAVGKS L+ RF + +F    ++TIG  F T+T+ +D  TVK +IWDTAGQERY ++   YYRGA  A++VYD+T   +F     W+ EL+  A  NIVI L GNK DL S RAV  ++AQ +A   +L FMETSA  A NV
Sbjct:   22 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNV 171          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB5C_HUMAN (Ras-related protein Rab-5C OS=Homo sapiens GN=RAB5C PE=1 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.006e-36
Identity = 77/150 (51.33%), Postives = 101/150 (67.33%), Query Frame = 2
Query:  110 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNV 559
            FK+VL+G+SAVGKS L+ RF + +F    ++TIG  F T+T+ +D  TVK +IWDTAGQERY ++   YYRGA  A++VYD+T   +F     W+ EL+  A  NIVI L GNK DL S RAV  ++AQ +A   +L FMETSA  A NV
Sbjct:   22 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNV 171          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB5C_CHICK (Ras-related protein Rab-5C OS=Gallus gallus GN=RAB5C PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.006e-36
Identity = 77/150 (51.33%), Postives = 101/150 (67.33%), Query Frame = 2
Query:  110 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNV 559
            FK+VL+G+SAVGKS L+ RF + +F    ++TIG  F T+T+ +D  TVK +IWDTAGQERY ++   YYRGA  A++VYD+T   +F     W+ EL+  A  NIVI L GNK DL + RAV  +DAQ +A   +L FMETSA  A NV
Sbjct:   22 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFVRAKNWVKELQRQASPNIVIALAGNKADLATKRAVDFQDAQTYADDNSLLFMETSAKTAMNV 171          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB5C_CANFA (Ras-related protein Rab-5C OS=Canis familiaris GN=RAB5C PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.006e-36
Identity = 77/150 (51.33%), Postives = 101/150 (67.33%), Query Frame = 2
Query:  110 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNV 559
            FK+VL+G+SAVGKS L+ RF + +F    ++TIG  F T+T+ +D  TVK +IWDTAGQERY ++   YYRGA  A++VYD+T   +F     W+ EL+  A  NIVI L GNK DL S RAV  ++AQ +A   +L FMETSA  A NV
Sbjct:   22 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNV 171          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB5A_PIG (Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.006e-36
Identity = 76/150 (50.67%), Postives = 102/150 (68.00%), Query Frame = 2
Query:  110 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNV 559
            FK+VL+G+SAVGKS L+ RF + +F    ++TIG  F T+T+ +D  TVK +IWDTAGQERY ++   YYRGA  A++VYD+T  +SF     W+ EL+  A  NIVI L GNK DL + RAV  ++AQ +A   +L FMETSA  + NV
Sbjct:   21 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNV 170          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB5A_MOUSE (Ras-related protein Rab-5A OS=Mus musculus GN=Rab5a PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.006e-36
Identity = 76/150 (50.67%), Postives = 102/150 (68.00%), Query Frame = 2
Query:  110 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNV 559
            FK+VL+G+SAVGKS L+ RF + +F    ++TIG  F T+T+ +D  TVK +IWDTAGQERY ++   YYRGA  A++VYD+T  +SF     W+ EL+  A  NIVI L GNK DL + RAV  ++AQ +A   +L FMETSA  + NV
Sbjct:   21 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNV 170          
The following BLAST results are available for this feature:
BLAST of DN617910 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB5C_BOVIN5.898e-3751.33Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C ... [more]
RAB13_HUMAN7.703e-3744.16Ras-related protein Rab-13 OS=Homo sapiens GN=RAB1... [more]
RAB13_BOVIN7.703e-3744.16Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 ... [more]
RAB5C_PONAB1.006e-3651.33Ras-related protein Rab-5C OS=Pongo abelii GN=RAB5... [more]
RAB5C_MOUSE1.006e-3651.33Ras-related protein Rab-5C OS=Mus musculus GN=Rab5... [more]
RAB5C_HUMAN1.006e-3651.33Ras-related protein Rab-5C OS=Homo sapiens GN=RAB5... [more]
RAB5C_CHICK1.006e-3651.33Ras-related protein Rab-5C OS=Gallus gallus GN=RAB... [more]
RAB5C_CANFA1.006e-3651.33Ras-related protein Rab-5C OS=Canis familiaris GN=... [more]
RAB5A_PIG1.006e-3650.67Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A ... [more]
RAB5A_MOUSE1.006e-3650.67Ras-related protein Rab-5A OS=Mus musculus GN=Rab5... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01N16_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001N16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617910 ID=DN617910; Name=DN617910; organism=Citrus sinensis; type=EST; length=565bp
TTGATTTTATGCGAATCTTTAGAGGAAATTAGGTTTATATAGCAATTGTT
TGGTGGCGTCGACGATGTCAAATTTGTACGGAGATTACAATCAAAAGATT
GATTATGTATTCAAAGTTGTATTAATAGGGGATTCGGCGGTGGGGAAATC
ACAGCTACTGGCGCGTTTTGCTAGAAATGAATTCAGCGTCGATTCCAAGG
CCACGATTGGTGTCGAATTTCAAACCAAAACCCTTTCCATTGATCACAAA
ACTGTCAAAGCTCAGATTTGGGACACTGCCGGCCAAGAAAGGTACAGGGC
TGTGACAAGCGCATATTACCGAGGAGCAGTTGGGGCAATGTTAGTTTATG
ACATGACGAAGCGTCAGTCATTTGACCACATGGCAAGATGGCTGGATGAA
CTAAGGGGGCATGCTGATAAGAATATTGTTATTATGCTCATTGGCAACAA
GTGTGACTTGGGAAGTCTTCGTGCGGTGCCAACGGAAGATGCCCAAGAGT
TTGCCCAAAGAGAAAACCTTTTCTTTATGGAGACATCAGCTCTCGAGGCC
ACCAATGTTGAAACT
back to top