DN617910

Overview
NameDN617910
Unique NameDN617910
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length565
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RB11A_RABIT (Ras-related protein Rab-11A OS=Oryctolagus cuniculus GN=RAB11A PE=2 SV=3)

HSP 1 Score: 226.868 bits (577), Expect = 5.482e-59
Identity = 107/161 (66.46%), Postives = 137/161 (85.09%), Query Frame = 2
Query:   80 GDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            G  + + DY+FKVVLIGDS VGKS LL+RF RNEF+++SK+TIGVEF T+++ +D KT+KAQIWDTAGQERYRA+TSAYYRGAVGA+LVYD+ K  +++++ RWL ELR HAD NIVIML+GNK DL  LRAVPT++A+ FA++  L F+ETSAL++TNVE
Sbjct:    2 GTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVE 162          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RB11A_PONAB (Ras-related protein Rab-11A OS=Pongo abelii GN=RAB11A PE=2 SV=3)

HSP 1 Score: 226.868 bits (577), Expect = 5.482e-59
Identity = 107/161 (66.46%), Postives = 137/161 (85.09%), Query Frame = 2
Query:   80 GDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            G  + + DY+FKVVLIGDS VGKS LL+RF RNEF+++SK+TIGVEF T+++ +D KT+KAQIWDTAGQERYRA+TSAYYRGAVGA+LVYD+ K  +++++ RWL ELR HAD NIVIML+GNK DL  LRAVPT++A+ FA++  L F+ETSAL++TNVE
Sbjct:    2 GTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVE 162          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RB11A_PIG (Ras-related protein Rab-11A OS=Sus scrofa GN=RAB11A PE=2 SV=3)

HSP 1 Score: 226.868 bits (577), Expect = 5.482e-59
Identity = 107/161 (66.46%), Postives = 137/161 (85.09%), Query Frame = 2
Query:   80 GDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            G  + + DY+FKVVLIGDS VGKS LL+RF RNEF+++SK+TIGVEF T+++ +D KT+KAQIWDTAGQERYRA+TSAYYRGAVGA+LVYD+ K  +++++ RWL ELR HAD NIVIML+GNK DL  LRAVPT++A+ FA++  L F+ETSAL++TNVE
Sbjct:    2 GTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVE 162          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RB11A_MOUSE (Ras-related protein Rab-11A OS=Mus musculus GN=Rab11a PE=1 SV=3)

HSP 1 Score: 226.868 bits (577), Expect = 5.482e-59
Identity = 107/161 (66.46%), Postives = 137/161 (85.09%), Query Frame = 2
Query:   80 GDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            G  + + DY+FKVVLIGDS VGKS LL+RF RNEF+++SK+TIGVEF T+++ +D KT+KAQIWDTAGQERYRA+TSAYYRGAVGA+LVYD+ K  +++++ RWL ELR HAD NIVIML+GNK DL  LRAVPT++A+ FA++  L F+ETSAL++TNVE
Sbjct:    2 GTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVE 162          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RB11A_HUMAN (Ras-related protein Rab-11A OS=Homo sapiens GN=RAB11A PE=1 SV=3)

HSP 1 Score: 226.868 bits (577), Expect = 5.482e-59
Identity = 107/161 (66.46%), Postives = 137/161 (85.09%), Query Frame = 2
Query:   80 GDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            G  + + DY+FKVVLIGDS VGKS LL+RF RNEF+++SK+TIGVEF T+++ +D KT+KAQIWDTAGQERYRA+TSAYYRGAVGA+LVYD+ K  +++++ RWL ELR HAD NIVIML+GNK DL  LRAVPT++A+ FA++  L F+ETSAL++TNVE
Sbjct:    2 GTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVE 162          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RB11A_CANFA (Ras-related protein Rab-11A OS=Canis familiaris GN=RAB11A PE=2 SV=3)

HSP 1 Score: 226.868 bits (577), Expect = 5.482e-59
Identity = 107/161 (66.46%), Postives = 137/161 (85.09%), Query Frame = 2
Query:   80 GDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            G  + + DY+FKVVLIGDS VGKS LL+RF RNEF+++SK+TIGVEF T+++ +D KT+KAQIWDTAGQERYRA+TSAYYRGAVGA+LVYD+ K  +++++ RWL ELR HAD NIVIML+GNK DL  LRAVPT++A+ FA++  L F+ETSAL++TNVE
Sbjct:    2 GTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVE 162          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RIC2_ORYSJ (Ras-related protein RIC2 OS=Oryza sativa subsp. japonica GN=RIC2 PE=2 SV=2)

HSP 1 Score: 226.483 bits (576), Expect = 7.160e-59
Identity = 108/154 (70.13%), Postives = 133/154 (86.36%), Query Frame = 2
Query:  101 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            DY+FKVVLIGDS VGKS LL+RF RNEFS++SK+TIGVEF T++L +D K VKAQIWDTAGQERYRA+TSAYYRGAVGA+LVYD+T+  +F+++ RWL ELR H D NIV+ML+GNK DL  L AV T++ + FA+RE+L+FMETSALE+TNVE
Sbjct:   12 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLQVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLKELRDHTDPNIVVMLVGNKSDLRHLVAVQTDEGKAFAERESLYFMETSALESTNVE 165          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RB11C_LOTJA (Ras-related protein Rab11C OS=Lotus japonicus GN=RAB11C PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 7.160e-59
Identity = 108/158 (68.35%), Postives = 133/158 (84.18%), Query Frame = 2
Query:   89 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            + + DY+FK+VLIGDS VGKS +L+RF RNEF ++SK+TIGVEF T+TL ++ KTVKAQIWDTAGQERYRA+TSAYYRGAVGA+LVYD+TKRQ+FD++ RWL ELR HAD NIVIM+ GNK DL  LRAV  +D    +++E L F+ETSALEATN+E
Sbjct:    6 DHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRAVSEDDGGALSEKEGLSFLETSALEATNIE 163          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RB11A_BOVIN (Ras-related protein Rab-11A OS=Bos taurus GN=RAB11A PE=2 SV=3)

HSP 1 Score: 225.713 bits (574), Expect = 1.221e-58
Identity = 107/161 (66.46%), Postives = 136/161 (84.47%), Query Frame = 2
Query:   80 GDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            G  + + DY+FKVVLIGDS VGKS LL+RF RNEF+++SK+TIGVEF T+++ +D KT+KAQIWDTAGQERYRA+TSAYYRGAVGA+LVYD+ K  +++++ RWL ELR HAD NIVIML+GNK DL  LRAVPT++A+ FA++  L F+ETSAL+ TNVE
Sbjct:    2 GTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDYTNVE 162          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: YPT3_SCHPO (GTP-binding protein ypt3 OS=Schizosaccharomyces pombe GN=ypt3 PE=1 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 1.595e-58
Identity = 108/154 (70.13%), Postives = 131/154 (85.06%), Query Frame = 2
Query:  101 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            DY+FK VLIGDS VGKS LL RF RNEF+++SK+TIGVEF T+ + +D+K +KAQIWDTAGQERYRA+TSAYYRGAVGA++VYD+TK+ SFD++ RWL ELR HAD NIVIML+GNK DL  LRAV TE+AQ FA   NL F+ETSA++A+NVE
Sbjct:    8 DYLFKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSNIVIMLVGNKTDLLHLRAVSTEEAQAFAAENNLSFIETSAMDASNVE 161          
The following BLAST results are available for this feature:
BLAST of DN617910 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11A_RABIT5.482e-5966.46Ras-related protein Rab-11A OS=Oryctolagus cunicul... [more]
RB11A_PONAB5.482e-5966.46Ras-related protein Rab-11A OS=Pongo abelii GN=RAB... [more]
RB11A_PIG5.482e-5966.46Ras-related protein Rab-11A OS=Sus scrofa GN=RAB11... [more]
RB11A_MOUSE5.482e-5966.46Ras-related protein Rab-11A OS=Mus musculus GN=Rab... [more]
RB11A_HUMAN5.482e-5966.46Ras-related protein Rab-11A OS=Homo sapiens GN=RAB... [more]
RB11A_CANFA5.482e-5966.46Ras-related protein Rab-11A OS=Canis familiaris GN... [more]
RIC2_ORYSJ7.160e-5970.13Ras-related protein RIC2 OS=Oryza sativa subsp. ja... [more]
RB11C_LOTJA7.160e-5968.35Ras-related protein Rab11C OS=Lotus japonicus GN=R... [more]
RB11A_BOVIN1.221e-5866.46Ras-related protein Rab-11A OS=Bos taurus GN=RAB11... [more]
YPT3_SCHPO1.595e-5870.13GTP-binding protein ypt3 OS=Schizosaccharomyces po... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01N16_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001N16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617910 ID=DN617910; Name=DN617910; organism=Citrus sinensis; type=EST; length=565bp
TTGATTTTATGCGAATCTTTAGAGGAAATTAGGTTTATATAGCAATTGTT
TGGTGGCGTCGACGATGTCAAATTTGTACGGAGATTACAATCAAAAGATT
GATTATGTATTCAAAGTTGTATTAATAGGGGATTCGGCGGTGGGGAAATC
ACAGCTACTGGCGCGTTTTGCTAGAAATGAATTCAGCGTCGATTCCAAGG
CCACGATTGGTGTCGAATTTCAAACCAAAACCCTTTCCATTGATCACAAA
ACTGTCAAAGCTCAGATTTGGGACACTGCCGGCCAAGAAAGGTACAGGGC
TGTGACAAGCGCATATTACCGAGGAGCAGTTGGGGCAATGTTAGTTTATG
ACATGACGAAGCGTCAGTCATTTGACCACATGGCAAGATGGCTGGATGAA
CTAAGGGGGCATGCTGATAAGAATATTGTTATTATGCTCATTGGCAACAA
GTGTGACTTGGGAAGTCTTCGTGCGGTGCCAACGGAAGATGCCCAAGAGT
TTGCCCAAAGAGAAAACCTTTTCTTTATGGAGACATCAGCTCTCGAGGCC
ACCAATGTTGAAACT
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