DN617910

Overview
NameDN617910
Unique NameDN617910
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length565
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RB11E_LOTJA (Ras-related protein Rab11E OS=Lotus japonicus GN=RAB11E PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 1.595e-58
Identity = 109/158 (68.99%), Postives = 133/158 (84.18%), Query Frame = 2
Query:   89 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            + + DY+FK+VLIGDS VGKS LL+RF RNEF+++SK+TIGVEF TK+L+ID K +KAQIWDTAGQERYRA+TSAYYRGAVGA+LVYD+T+  +F+   RWL ELR H D NIV+MLIGNK DL  L  V TED + FA++E+L+FMETSALEATNVE
Sbjct:    7 DDEYDYLFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSLNIDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRSTTFETAGRWLKELRDHTDPNIVVMLIGNKSDLRHLVTVSTEDGKAFAEKESLYFMETSALEATNVE 164          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RGP2_ORYSJ (Ras-related protein RGP2 OS=Oryza sativa subsp. japonica GN=RGP2 PE=2 SV=2)

HSP 1 Score: 224.942 bits (572), Expect = 2.083e-58
Identity = 108/161 (67.08%), Postives = 135/161 (83.85%), Query Frame = 2
Query:   80 GDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            G  + +  Y+FK+VLIGDS VGKS +L+RF RN FS+DSK+TIGVEF TK+L ++ KT+KAQIWDTAGQERYRA+TSAYYRGAVGA+LVYD+TKRQSFD++ RWL ELR HAD +IVIM++GNK DL  LRAV  ++ +  A++E LFF+ETSA+EA NVE
Sbjct:    3 GRVDHEYSYLFKMVLIGDSGVGKSNILSRFTRNHFSLDSKSTIGVEFATKSLQMEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQSFDNVHRWLRELRDHADSSIVIMMVGNKSDLIHLRAVSEDEGKALAEKEGLFFLETSAMEAVNVE 163          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: YPT3_NICPL (Ras-related protein YPT3 OS=Nicotiana plumbaginifolia GN=YPT3 PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 2.721e-58
Identity = 107/158 (67.72%), Postives = 136/158 (86.08%), Query Frame = 2
Query:   89 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            + + DY+FK+VLIGDS VGKS LL+RF +NEF+++SK+TIGVEF TK+L+ID+K +KAQIWDTAGQERYRA+TSAYYRGAVGA+LVYD+T+  +++++ RWL ELR H D NIV+MLIGNK DL  L AV T++A+  A+RE L+FMETSALEATNVE
Sbjct:    7 DDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKSLNIDNKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTYENVTRWLKELRDHTDPNIVVMLIGNKSDLRHLVAVSTDEAKGLAEREGLYFMETSALEATNVE 164          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: ARA4_ARATH (Ras-related protein ARA-4 OS=Arabidopsis thaliana GN=ARA-4 PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 8.753e-57
Identity = 104/155 (67.10%), Postives = 132/155 (85.16%), Query Frame = 2
Query:  101 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVET 565
            +Y+FK+V+IGDSAVGKS LL R+ARNEF+ +SKATIGVEFQT+++ ID K VKAQIWDTAGQER+RAVTSAYYRGAVGA++VYD+T+  +F+++ RWLDEL  H+D  +  MLIGNKCDL S+RAV  E+ +  A+ E LFFMETSAL++TNV+T
Sbjct:   10 EYLFKIVIIGDSAVGKSNLLTRYARNEFNPNSKATIGVEFQTQSMLIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRSSTFENVGRWLDELNTHSDTTVAKMLIGNKCDLESIRAVSVEEGKSLAESEGLFFMETSALDSTNVKT 164          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: ARA1_ARATH (Ras-related protein ARA-1 OS=Arabidopsis thaliana GN=ARA-1 PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 1.493e-56
Identity = 102/155 (65.81%), Postives = 134/155 (86.45%), Query Frame = 2
Query:  101 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVET 565
            +Y+FK+V+IGDSAVGKS LL+R+ARNEFS +SKATIGVEFQT+++ I+ K VKAQIWDTAGQER+RAVTSAYYRGAVGA++VYD+T+R +F+ + RWLDEL+ H+D  +  ML+GNKCDL ++RAV  E+ +  A+ E LFF+ETSAL++TNV+T
Sbjct:   10 EYLFKIVVIGDSAVGKSNLLSRYARNEFSANSKATIGVEFQTQSMEIEGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRTTFESVGRWLDELKIHSDTTVARMLVGNKCDLENIRAVSVEEGKALAEEEGLFFVETSALDSTNVKT 164          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RB11A_TOBAC (Ras-related protein Rab11A OS=Nicotiana tabacum GN=RAB11A PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 1.950e-56
Identity = 106/158 (67.09%), Postives = 130/158 (82.28%), Query Frame = 2
Query:   89 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            + + DY+FK+VLIGDS VGKS +L+RF RNEF ++SK+TIGVEF T+TL ++ KTVKAQIWDTAGQERYRA+TSAYYRGAVGA+L YD+TKRQ+FD++ RWL ELR H D NIVI+L GNK DL  LRAV  +D Q   ++E L F+ETSALEA NV+
Sbjct:    6 DHEYDYLFKMVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLFYDITKRQTFDNVQRWLRELRDHRDSNIVIILAGNKSDLKHLRAVSEQDDQALVKKEGLSFLETSALEALNVD 163          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: YPT31_YEAST (GTP-binding protein YPT31/YPT8 OS=Saccharomyces cerevisiae GN=YPT31 PE=1 SV=3)

HSP 1 Score: 213.386 bits (542), Expect = 6.273e-55
Identity = 102/160 (63.75%), Postives = 127/160 (79.38%), Query Frame = 2
Query:   83 DYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            DY    D +FK+VLIGDS VGKS LL+RF +NEF++DSK+TIGVEF T+TL ID K +KAQIWDTAGQERYRA+TSAYYRGAVGA++VYD++K  S+++   WL ELR +AD N+ + LIGNK DL  LRAVPTE+++ FAQ   L F ETSAL + NV+
Sbjct:    5 DYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIDGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVD 164          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RB11A_DICDI (Ras-related protein Rab-11A OS=Dictyostelium discoideum GN=rab11A PE=1 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 9.058e-54
Identity = 97/157 (61.78%), Postives = 133/157 (84.71%), Query Frame = 2
Query:   92 QKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            ++ DY++K+VLIGDS VGKS LL+RF RNEFS+++K+TIGVEF T+T+  + KT+KAQ+WDTAGQERYRA+TSAYYRGAVGA+LVYD+ K+ ++  + RW+ ELR +AD+NI IML+GNK DL  LR V T++A+EF+++  L F+ETSAL+++NVE
Sbjct:    8 EEYDYLYKIVLIGDSGVGKSNLLSRFTRNEFSLETKSTIGVEFATRTIQTEGKTIKAQVWDTAGQERYRAITSAYYRGAVGALLVYDIAKQATYKSVERWILELRENADRNIEIMLVGNKSDLRHLREVSTDEAKEFSEKHKLTFIETSALDSSNVE 164          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: YPT32_YEAST (GTP-binding protein YPT32/YPT11 OS=Saccharomyces cerevisiae GN=YPT32 PE=1 SV=3)

HSP 1 Score: 208.379 bits (529), Expect = 2.018e-53
Identity = 96/160 (60.00%), Postives = 127/160 (79.38%), Query Frame = 2
Query:   83 DYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            DY    DY+FK+VLIGDS VGKS LL+RF  +EF+++SK+TIGVEF T+T+ +++K +KAQIWDTAGQERYRA+TSAYYRGAVGA++VYD++K  S+++   WL ELR +AD N+ + LIGNK DL  LRAVPT++A+ FA    + F ETSAL + NV+
Sbjct:    5 DYGYDYDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVD 164          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB25_HUMAN (Ras-related protein Rab-25 OS=Homo sapiens GN=RAB25 PE=1 SV=2)

HSP 1 Score: 204.142 bits (518), Expect = 3.805e-52
Identity = 101/160 (63.12%), Postives = 125/160 (78.12%), Query Frame = 2
Query:   83 DYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            DYN    +VFKVVLIG+S VGK+ LL+RF RNEFS DS+ TIGVEF T+T+ +    VKAQIWDTAG ERYRA+TSAYYRGAVGA+LV+D+TK Q++  + RWL EL  HA+  IV+ML+GNK DL   R VPTE+A+ FA+   L F+ETSAL++TNVE
Sbjct:    8 DYN----FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVE 163          
The following BLAST results are available for this feature:
BLAST of DN617910 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11E_LOTJA1.595e-5868.99Ras-related protein Rab11E OS=Lotus japonicus GN=R... [more]
RGP2_ORYSJ2.083e-5867.08Ras-related protein RGP2 OS=Oryza sativa subsp. ja... [more]
YPT3_NICPL2.721e-5867.72Ras-related protein YPT3 OS=Nicotiana plumbaginifo... [more]
ARA4_ARATH8.753e-5767.10Ras-related protein ARA-4 OS=Arabidopsis thaliana ... [more]
ARA1_ARATH1.493e-5665.81Ras-related protein ARA-1 OS=Arabidopsis thaliana ... [more]
RB11A_TOBAC1.950e-5667.09Ras-related protein Rab11A OS=Nicotiana tabacum GN... [more]
YPT31_YEAST6.273e-5563.75GTP-binding protein YPT31/YPT8 OS=Saccharomyces ce... [more]
RB11A_DICDI9.058e-5461.78Ras-related protein Rab-11A OS=Dictyostelium disco... [more]
YPT32_YEAST2.018e-5360.00GTP-binding protein YPT32/YPT11 OS=Saccharomyces c... [more]
RAB25_HUMAN3.805e-5263.13Ras-related protein Rab-25 OS=Homo sapiens GN=RAB2... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01N16_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001N16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617910 ID=DN617910; Name=DN617910; organism=Citrus sinensis; type=EST; length=565bp
TTGATTTTATGCGAATCTTTAGAGGAAATTAGGTTTATATAGCAATTGTT
TGGTGGCGTCGACGATGTCAAATTTGTACGGAGATTACAATCAAAAGATT
GATTATGTATTCAAAGTTGTATTAATAGGGGATTCGGCGGTGGGGAAATC
ACAGCTACTGGCGCGTTTTGCTAGAAATGAATTCAGCGTCGATTCCAAGG
CCACGATTGGTGTCGAATTTCAAACCAAAACCCTTTCCATTGATCACAAA
ACTGTCAAAGCTCAGATTTGGGACACTGCCGGCCAAGAAAGGTACAGGGC
TGTGACAAGCGCATATTACCGAGGAGCAGTTGGGGCAATGTTAGTTTATG
ACATGACGAAGCGTCAGTCATTTGACCACATGGCAAGATGGCTGGATGAA
CTAAGGGGGCATGCTGATAAGAATATTGTTATTATGCTCATTGGCAACAA
GTGTGACTTGGGAAGTCTTCGTGCGGTGCCAACGGAAGATGCCCAAGAGT
TTGCCCAAAGAGAAAACCTTTTCTTTATGGAGACATCAGCTCTCGAGGCC
ACCAATGTTGAAACT
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