DN617910

Overview
NameDN617910
Unique NameDN617910
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length565
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB2A_PONAB (Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2A PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.227e-42
Identity = 82/153 (53.59%), Postives = 110/153 (71.90%), Query Frame = 2 
Query:  104 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            Y+FK ++IGD+ VGKS LL +F    F      TIGVEF  + ++ID K +K QIWDTAGQE +R++T +YYRGA GA+LVYD+T+R +F+H+  WL++ R H++ N+VIMLIGNK DL S R V  E+ + FA+   L FMETSA  A+NVE
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVE 157
[Close]
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB2A_MOUSE (Ras-related protein Rab-2A OS=Mus musculus GN=Rab2a PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.227e-42
Identity = 82/153 (53.59%), Postives = 110/153 (71.90%), Query Frame = 2 
Query:  104 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            Y+FK ++IGD+ VGKS LL +F    F      TIGVEF  + ++ID K +K QIWDTAGQE +R++T +YYRGA GA+LVYD+T+R +F+H+  WL++ R H++ N+VIMLIGNK DL S R V  E+ + FA+   L FMETSA  A+NVE
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVE 157
[Close]
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB2A_MACFA (Ras-related protein Rab-2A OS=Macaca fascicularis GN=RAB2A PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.227e-42
Identity = 82/153 (53.59%), Postives = 110/153 (71.90%), Query Frame = 2 
Query:  104 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            Y+FK ++IGD+ VGKS LL +F    F      TIGVEF  + ++ID K +K QIWDTAGQE +R++T +YYRGA GA+LVYD+T+R +F+H+  WL++ R H++ N+VIMLIGNK DL S R V  E+ + FA+   L FMETSA  A+NVE
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVE 157
[Close]
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB2A_HUMAN (Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2A PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.227e-42
Identity = 82/153 (53.59%), Postives = 110/153 (71.90%), Query Frame = 2 
Query:  104 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            Y+FK ++IGD+ VGKS LL +F    F      TIGVEF  + ++ID K +K QIWDTAGQE +R++T +YYRGA GA+LVYD+T+R +F+H+  WL++ R H++ N+VIMLIGNK DL S R V  E+ + FA+   L FMETSA  A+NVE
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVE 157
[Close]
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB2A_CHICK (Ras-related protein Rab-2A OS=Gallus gallus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.227e-42
Identity = 82/153 (53.59%), Postives = 110/153 (71.90%), Query Frame = 2 
Query:  104 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            Y+FK ++IGD+ VGKS LL +F    F      TIGVEF  + ++ID K +K QIWDTAGQE +R++T +YYRGA GA+LVYD+T+R +F+H+  WL++ R H++ N+VIMLIGNK DL S R V  E+ + FA+   L FMETSA  A+NVE
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVE 157
[Close]
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB2A_CANFA (Ras-related protein Rab-2A OS=Canis familiaris GN=RAB2A PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.227e-42
Identity = 82/153 (53.59%), Postives = 110/153 (71.90%), Query Frame = 2 
Query:  104 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            Y+FK ++IGD+ VGKS LL +F    F      TIGVEF  + ++ID K +K QIWDTAGQE +R++T +YYRGA GA+LVYD+T+R +F+H+  WL++ R H++ N+VIMLIGNK DL S R V  E+ + FA+   L FMETSA  A+NVE
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVE 157
[Close]
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB2B_MOUSE (Ras-related protein Rab-2B OS=Mus musculus GN=Rab2b PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.733e-42
Identity = 82/153 (53.59%), Postives = 109/153 (71.24%), Query Frame = 2 
Query:  104 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            Y+FK ++IGD+ VGKS LL +F    F      TIGVEF  + ++ID K +K QIWDTAGQE +R++T +YYRGA GA+LVYD+T+R++F+H+  WL++ R H+  N+VIMLIGNK DL S R V  E+ + FA+   L FMETSA  A NVE
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVE 157
[Close]
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB2B_HUMAN (Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2B PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.733e-42
Identity = 82/153 (53.59%), Postives = 109/153 (71.24%), Query Frame = 2 
Query:  104 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            Y+FK ++IGD+ VGKS LL +F    F      TIGVEF  + ++ID K +K QIWDTAGQE +R++T +YYRGA GA+LVYD+T+R++F+H+  WL++ R H+  N+VIMLIGNK DL S R V  E+ + FA+   L FMETSA  A NVE
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVE 157
[Close]
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB2A_RAT (Ras-related protein Rab-2A OS=Rattus norvegicus GN=Rab2a PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.733e-42
Identity = 81/153 (52.94%), Postives = 110/153 (71.90%), Query Frame = 2 
Query:  104 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            Y+FK ++IGD+ VGKS LL +F    F      T+GVEF  + ++ID K +K QIWDTAGQE +R++T +YYRGA GA+LVYD+T+R +F+H+  WL++ R H++ N+VIMLIGNK DL S R V  E+ + FA+   L FMETSA  A+NVE
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTMGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVE 157
[Close]
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB2_LYMST (Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=RAB2 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 3.570e-42
Identity = 81/153 (52.94%), Postives = 109/153 (71.24%), Query Frame = 2 
Query:  104 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            Y+FK ++IGD+ VGKS LL +F    F      TIGVEF  + ++ID K +K QIWDTAGQE +R++T +YYRGA GA+LVYD+T+R +F+H+  WL++ R H++ N+VIMLIGNK DL + R V  E+ + FA+   L FMETSA  A NVE
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLEARREVKKEEGEAFAREHGLIFMETSAKTAANVE 157
The following BLAST results are available for this feature:
BLAST of DN617910 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB2A_PONAB1.227e-4253.59Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2... [more]
RAB2A_MOUSE1.227e-4253.59Ras-related protein Rab-2A OS=Mus musculus GN=Rab2... [more]
RAB2A_MACFA1.227e-4253.59Ras-related protein Rab-2A OS=Macaca fascicularis ... [more]
RAB2A_HUMAN1.227e-4253.59Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2... [more]
RAB2A_CHICK1.227e-4253.59Ras-related protein Rab-2A OS=Gallus gallus GN=RAB... [more]
RAB2A_CANFA1.227e-4253.59Ras-related protein Rab-2A OS=Canis familiaris GN=... [more]
RAB2B_MOUSE2.733e-4253.59Ras-related protein Rab-2B OS=Mus musculus GN=Rab2... [more]
RAB2B_HUMAN2.733e-4253.59Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2... [more]
RAB2A_RAT2.733e-4252.94Ras-related protein Rab-2A OS=Rattus norvegicus GN... [more]
RAB2_LYMST3.570e-4252.94Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01N16_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001N16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617910 ID=DN617910; Name=DN617910; organism=Citrus sinensis; type=EST; length=565bp
TTGATTTTATGCGAATCTTTAGAGGAAATTAGGTTTATATAGCAATTGTT
TGGTGGCGTCGACGATGTCAAATTTGTACGGAGATTACAATCAAAAGATT
GATTATGTATTCAAAGTTGTATTAATAGGGGATTCGGCGGTGGGGAAATC
ACAGCTACTGGCGCGTTTTGCTAGAAATGAATTCAGCGTCGATTCCAAGG
CCACGATTGGTGTCGAATTTCAAACCAAAACCCTTTCCATTGATCACAAA
ACTGTCAAAGCTCAGATTTGGGACACTGCCGGCCAAGAAAGGTACAGGGC
TGTGACAAGCGCATATTACCGAGGAGCAGTTGGGGCAATGTTAGTTTATG
ACATGACGAAGCGTCAGTCATTTGACCACATGGCAAGATGGCTGGATGAA
CTAAGGGGGCATGCTGATAAGAATATTGTTATTATGCTCATTGGCAACAA
GTGTGACTTGGGAAGTCTTCGTGCGGTGCCAACGGAAGATGCCCAAGAGT
TTGCCCAAAGAGAAAACCTTTTCTTTATGGAGACATCAGCTCTCGAGGCC
ACCAATGTTGAAACT
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