DN617910

Overview
NameDN617910
Unique NameDN617910
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length565
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RBD2A_ARATH (Ras-related protein RABD2A OS=Arabidopsis thaliana GN=RABD2A PE=1 SV=3)

HSP 1 Score: 168.318 bits (425), Expect = 2.314e-41
Identity = 82/158 (51.90%), Postives = 115/158 (72.78%), Query Frame = 2
Query:   89 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            N + DY+FK++LIGDS VGKS LL RF+ + +     +TIGV+F+ +T+  D KT+K QIWDTAGQER+R +TS+YYRGA G ++VYD+T  +SF+++ +WL E+  +A  N+  +L+GNK DL   RA+P E A+ FA    + FMETSA +ATNVE
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFSDDSYVESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKSDLTENRAIPYETAKAFADEIGIPFMETSAKDATNVE 159          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB1B_MACFA (Ras-related protein Rab-1B OS=Macaca fascicularis GN=RAB1B PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 8.793e-41
Identity = 80/158 (50.63%), Postives = 116/158 (73.42%), Query Frame = 2
Query:   89 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            N + DY+FK++LIGDS VGKS LL RFA + ++    +TIGV+F+ +T+ +D KT+K QIWDTAGQER+R +TS+YYRGA G ++VYD+T R+S+ ++ +WL E+  +A +N+  +L+GNK DL + + V    A+EFA    + F+ETSA  ATNVE
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDRESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVE 159          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: YPTM2_MAIZE (GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.148e-40
Identity = 81/158 (51.27%), Postives = 116/158 (73.42%), Query Frame = 2
Query:   89 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            N + DY+FK++LIGDS VGKS LL RFA + +     +TIGV+F+ +T+  D KT+K QIWDTAGQER+R +TS+YYRGA G ++VYD+T ++SF+++ +WL+E+  +A  N+  +L+GNK DL + + V TE A+ FA    + FMETSA  ATNV+
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKSDLTANKVVATETAKAFADEMGIPFMETSAKNATNVQ 159          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB2A_DICDI (Ras-related protein Rab-2A OS=Dictyostelium discoideum GN=rab2A PE=2 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 1.148e-40
Identity = 77/153 (50.33%), Postives = 110/153 (71.90%), Query Frame = 2
Query:  104 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            ++FK ++IGD+ VGKS LL +F    F      TIGVEF  + ++ID+K +K QIWDTAGQE +R++T +YYRG+ GA+LVYD+T+R +F+H+  WL + R +A+ N+ I+LIGNK D+ S RAV  E+ ++FA    L F+ETSA  A+NVE
Sbjct:    4 FLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKAIKLQIWDTAGQESFRSITRSYYRGSAGALLVYDITRRDTFNHLTCWLKDARSYANSNMTIILIGNKSDMESKRAVSYEEGRQFADENGLIFLETSAKTASNVE 156          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB1A_LYMST (Ras-related protein Rab-1A OS=Lymnaea stagnalis GN=RAB1A PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.148e-40
Identity = 82/166 (49.40%), Postives = 121/166 (72.89%), Query Frame = 2
Query:   65 MSNLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            MS +  DY    DY+FK++LIGDS VGKS LL RFA + ++    +TIGV+F+ +T+ +D KT+K QIWDTAGQER+R +TS+YYRGA G ++VYD+T ++SF+++ +WL E+  +A +N+  +L+GNK DL + + V    A+E+A +  + F+ETSA  ATNVE
Sbjct:    1 MSTMNPDY----DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDFTTAKEYADQLGIPFLETSAKNATNVE 162          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RIC1_ORYSJ (Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1 PE=2 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 1.500e-40
Identity = 80/158 (50.63%), Postives = 115/158 (72.78%), Query Frame = 2
Query:   89 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            N + DY+FK++LIGDS VGKS LL RFA + +     +TIGV+F+ +T+  D KT+K QIWDTAGQER+R +TS+YYRGA G ++VYD+T ++SF+++ +WL+E+  +A +N+  +L+GNKCDL   R V  E  +  A    + F+ETSA +ATNVE
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLAENRVVSYEAGKALADEIGIPFLETSAKDATNVE 159          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB1B_RAT (Ras-related protein Rab-1B OS=Rattus norvegicus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 2.558e-40
Identity = 80/158 (50.63%), Postives = 116/158 (73.42%), Query Frame = 2
Query:   89 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            N + DY+FK++LIGDS VGKS LL RFA + ++    +TIGV+F+ +T+ +D KT+K QIWDTAGQER+R VTS+YYRGA G ++VYD+T ++S+ ++ +WL E+  +A +N+  +L+GNK DL + + V    A+EFA    + F+ETSA  ATNVE
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTVTSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGVPFLETSAKNATNVE 159          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB1B_PONAB (Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1B PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 2.558e-40
Identity = 79/158 (50.00%), Postives = 116/158 (73.42%), Query Frame = 2
Query:   89 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            N + DY+FK++LIGDS VGKS LL RFA + ++    +TIGV+F+ +T+ +D KT+K QIWDTAGQER+R +TS+YYRGA G ++VYD+T ++S+ ++ +WL E+  +A +N+  +L+GNK DL + + V    A+EFA    + F+ETSA  ATNVE
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVE 159          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB1B_HUMAN (Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1B PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 2.558e-40
Identity = 79/158 (50.00%), Postives = 116/158 (73.42%), Query Frame = 2
Query:   89 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            N + DY+FK++LIGDS VGKS LL RFA + ++    +TIGV+F+ +T+ +D KT+K QIWDTAGQER+R +TS+YYRGA G ++VYD+T ++S+ ++ +WL E+  +A +N+  +L+GNK DL + + V    A+EFA    + F+ETSA  ATNVE
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVE 159          
BLAST of DN617910 vs. ExPASy Swiss-Prot
Match: RAB1B_BOVIN (Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 2.558e-40
Identity = 79/158 (50.00%), Postives = 116/158 (73.42%), Query Frame = 2
Query:   89 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 562
            N + DY+FK++LIGDS VGKS LL RFA + ++    +TIGV+F+ +T+ +D KT+K QIWDTAGQER+R +TS+YYRGA G ++VYD+T ++S+ ++ +WL E+  +A +N+  +L+GNK DL + + V    A+EFA    + F+ETSA  ATNVE
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVE 159          
The following BLAST results are available for this feature:
BLAST of DN617910 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RBD2A_ARATH2.314e-4151.90Ras-related protein RABD2A OS=Arabidopsis thaliana... [more]
RAB1B_MACFA8.793e-4150.63Ras-related protein Rab-1B OS=Macaca fascicularis ... [more]
YPTM2_MAIZE1.148e-4051.27GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=... [more]
RAB2A_DICDI1.148e-4050.33Ras-related protein Rab-2A OS=Dictyostelium discoi... [more]
RAB1A_LYMST1.148e-4049.40Ras-related protein Rab-1A OS=Lymnaea stagnalis GN... [more]
RIC1_ORYSJ1.500e-4050.63Ras-related protein RIC1 OS=Oryza sativa subsp. ja... [more]
RAB1B_RAT2.558e-4050.63Ras-related protein Rab-1B OS=Rattus norvegicus GN... [more]
RAB1B_PONAB2.558e-4050.00Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1... [more]
RAB1B_HUMAN2.558e-4050.00Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1... [more]
RAB1B_BOVIN2.558e-4050.00Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01N16_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001N16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617910 ID=DN617910; Name=DN617910; organism=Citrus sinensis; type=EST; length=565bp
TTGATTTTATGCGAATCTTTAGAGGAAATTAGGTTTATATAGCAATTGTT
TGGTGGCGTCGACGATGTCAAATTTGTACGGAGATTACAATCAAAAGATT
GATTATGTATTCAAAGTTGTATTAATAGGGGATTCGGCGGTGGGGAAATC
ACAGCTACTGGCGCGTTTTGCTAGAAATGAATTCAGCGTCGATTCCAAGG
CCACGATTGGTGTCGAATTTCAAACCAAAACCCTTTCCATTGATCACAAA
ACTGTCAAAGCTCAGATTTGGGACACTGCCGGCCAAGAAAGGTACAGGGC
TGTGACAAGCGCATATTACCGAGGAGCAGTTGGGGCAATGTTAGTTTATG
ACATGACGAAGCGTCAGTCATTTGACCACATGGCAAGATGGCTGGATGAA
CTAAGGGGGCATGCTGATAAGAATATTGTTATTATGCTCATTGGCAACAA
GTGTGACTTGGGAAGTCTTCGTGCGGTGCCAACGGAAGATGCCCAAGAGT
TTGCCCAAAGAGAAAACCTTTTCTTTATGGAGACATCAGCTCTCGAGGCC
ACCAATGTTGAAACT
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