DN617899
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN617899 vs. ExPASy Swiss-Prot
Match: XRN4_ARATH (5'-3' exoribonuclease 4 OS=Arabidopsis thaliana GN=XRN4 PE=2 SV=1) HSP 1 Score: 236.884 bits (603), Expect = 6.534e-62 Identity = 113/165 (68.48%), Postives = 126/165 (76.36%), Query Frame = 1 Query: 133 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTXXXXXXXXXXXXXXXXXXXXXXXXXXGKLLSAKEKPETCDSNVITPGT 627 MGVPAFYRWLADRYP SI DVVEE+P G G PVD+++PNPNG EFDNLYLDMNGIIHPCFHP+GKPAP +YDDVFKS+F+YIDH+F LVRPRK+LYLAIDGVAPRAKMNQQR+ G++LSAKEK ETCDSNVITPGT Sbjct: 1 MGVPAFYRWLADRYPKSISDVVEEEPTDGGRGDLIPVDITRPNPNGFEFDNLYLDMNGIIHPCFHPEGKPAPATYDDVFKSMFEYIDHLFTLVRPRKILYLAIDGVAPRAKMNQQRSRRFRAAKDAAEAEAEEERLRKDFEMEGQILSAKEKAETCDSNVITPGT 165
BLAST of DN617899 vs. ExPASy Swiss-Prot
Match: XRN3_ARATH (5'-3' exoribonuclease 3 OS=Arabidopsis thaliana GN=XRN3 PE=2 SV=1) HSP 1 Score: 201.445 bits (511), Expect = 3.042e-51 Identity = 94/165 (56.97%), Postives = 120/165 (72.73%), Query Frame = 1 Query: 133 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTXXXXXXXXXXXXXXXXXXXXXXXXXXGKLLSAKEKPETCDSNVITPGT 627 MGVP+FYRWLA++YPL + DV+EE+P V+ EG+ PVD SKPNPN +E+DNLYLDMNGIIHPCFHP+ +P+PT++++VF+ +FDYID +F++VRPRKLLY+AIDGVAPRAKMNQQR+ G+ L K + DSNVITPGT Sbjct: 1 MGVPSFYRWLAEKYPLLVADVIEEEP-VEIEGIKIPVDTSKPNPNNLEYDNLYLDMNGIIHPCFHPEDRPSPTTFEEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFRSAKDASDAAAEEERLREEFEREGRRLPPKVDSQVFDSNVITPGT 164
BLAST of DN617899 vs. ExPASy Swiss-Prot
Match: XRN2_ARATH (5'-3' exoribonuclease 2 OS=Arabidopsis thaliana GN=XRN2 PE=2 SV=1) HSP 1 Score: 200.675 bits (509), Expect = 5.189e-51 Identity = 96/166 (57.83%), Postives = 118/166 (71.08%), Query Frame = 1 Query: 133 MGVPAFYRWLADRYPLSIVDVVEEDP-QVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTXXXXXXXXXXXXXXXXXXXXXXXXXXGKLLSAKEKPETCDSNVITPGT 627 MGVP+FYRWL RYPL+I +V+EE+P +V+G GV P+D SKPNPNG E+DNLYLDMNGIIHPCFHP+ KP+PT++ +VF+ +FDYID +F++VRPRKLL++AIDGVAPRAKMNQQR GK L K + DSNVITPGT Sbjct: 1 MGVPSFYRWLIQRYPLTIQEVIEEEPLEVNGGGVTIPIDSSKPNPNGYEYDNLYLDMNGIIHPCFHPEDKPSPTTFTEVFQCMFDYIDRLFVMVRPRKLLFMAIDGVAPRAKMNQQRARRFRAAKDAAEAAAEEEQLREEFEREGKKLPPKVDSQVFDSNVITPGT 166
BLAST of DN617899 vs. ExPASy Swiss-Prot
Match: XRN2_PONAB (5'-3' exoribonuclease 2 OS=Pongo abelii GN=XRN2 PE=2 SV=1) HSP 1 Score: 179.874 bits (455), Expect = 9.479e-45 Identity = 91/165 (55.15%), Postives = 110/165 (66.67%), Query Frame = 1 Query: 133 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTXXXXXXXXXXXXXXXXXXXXXXXXXXGKLLSAKEKPETCDSNVITPGT 627 MGVPAF+RWL+ +YP IV+ VEE P+ + GV PVD SKPNPN +EFDNLYLDMNGIIHPC HP+ KPAP + D++ +IF+YID +F +VRPR+LLY+AIDGVAPRAKMNQQR+ G L +E E DSN ITPGT Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKPK-ECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIHPCTHPEDKPAPKNEDEMMVAIFEYIDRLFSIVRPRRLLYMAIDGVAPRAKMNQQRSRRFRASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGT 164
BLAST of DN617899 vs. ExPASy Swiss-Prot
Match: XRN2_HUMAN (5'-3' exoribonuclease 2 OS=Homo sapiens GN=XRN2 PE=1 SV=1) HSP 1 Score: 179.874 bits (455), Expect = 9.479e-45 Identity = 91/165 (55.15%), Postives = 110/165 (66.67%), Query Frame = 1 Query: 133 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTXXXXXXXXXXXXXXXXXXXXXXXXXXGKLLSAKEKPETCDSNVITPGT 627 MGVPAF+RWL+ +YP IV+ VEE P+ + GV PVD SKPNPN +EFDNLYLDMNGIIHPC HP+ KPAP + D++ +IF+YID +F +VRPR+LLY+AIDGVAPRAKMNQQR+ G L +E E DSN ITPGT Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKPK-ECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIHPCTHPEDKPAPKNEDEMMVAIFEYIDRLFSIVRPRRLLYMAIDGVAPRAKMNQQRSRRFRASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGT 164
BLAST of DN617899 vs. ExPASy Swiss-Prot
Match: XRN2_MOUSE (5'-3' exoribonuclease 2 OS=Mus musculus GN=Xrn2 PE=1 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 1.238e-44 Identity = 91/165 (55.15%), Postives = 110/165 (66.67%), Query Frame = 1 Query: 133 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTXXXXXXXXXXXXXXXXXXXXXXXXXXGKLLSAKEKPETCDSNVITPGT 627 MGVPAF+RWL+ +YP IV+ VEE P+ + GV PVD SKPNPN +EFDNLYLDMNGIIHPC HP+ KPAP + D++ +IF+YID +F +VRPR+LLY+AIDGVAPRAKMNQQR+ G L +E E DSN ITPGT Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKPK-ECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIHPCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFRASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGT 164
BLAST of DN617899 vs. ExPASy Swiss-Prot
Match: XRN2_CHICK (5'-3' exoribonuclease 2 OS=Gallus gallus GN=XRN2 PE=2 SV=1) HSP 1 Score: 175.637 bits (444), Expect = 1.788e-43 Identity = 90/165 (54.55%), Postives = 109/165 (66.06%), Query Frame = 1 Query: 133 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTXXXXXXXXXXXXXXXXXXXXXXXXXXGKLLSAKEKPETCDSNVITPGT 627 MGVPAF+RWL+ +YP IV+ VEE + + GV VD SKPNPN +EFDNLYLDMNGIIHPC HP+ KPAP + D++ +IF+YID IF +VRPR+LLY+AIDGVAPRAKMNQQR+ G +L +E E DSN ITPGT Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKAK-ECNGVKASVDTSKPNPNEVEFDNLYLDMNGIIHPCTHPEDKPAPKNEDEMMVAIFEYIDRIFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFRASKEGMEAAEEKQKIRQEILAKGGILPPEEVKERFDSNCITPGT 164
BLAST of DN617899 vs. ExPASy Swiss-Prot
Match: XRN2_CAEEL (5'-3' exoribonuclease 2 homolog OS=Caenorhabditis elegans GN=xrn-2 PE=1 SV=2) HSP 1 Score: 170.244 bits (430), Expect = 7.510e-42 Identity = 87/166 (52.41%), Postives = 108/166 (65.06%), Query Frame = 1 Query: 133 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTXXXXXXXXXXXXXXXXXXXXXXXXXXGKLLSAKEKPET-CDSNVITPGT 627 MGVPAF+RWL +YP ++V+ ED Q D +G PVD ++PNPN EFDNLYLDMNGIIHPC HP+ +PAP + D++F IF+YID I+ +VRPR+LLY+AIDGVAPRAKMNQQR+ G + K+K E DSN ITPGT Sbjct: 1 MGVPAFFRWLTKKYPATVVNA-NEDRQRDQDGNRVPVDCTQPNPNFQEFDNLYLDMNGIIHPCTHPEDRPAPKNEDEMFALIFEYIDRIYSIVRPRRLLYMAIDGVAPRAKMNQQRSRRFRASKEMAEKEASIEEQRNRLMAEGIAVPPKKKEEAHFDSNCITPGT 165
BLAST of DN617899 vs. ExPASy Swiss-Prot
Match: XRN2_CAEBR (5'-3' exoribonuclease 2 homolog OS=Caenorhabditis briggsae GN=xrn-2 PE=3 SV=2) HSP 1 Score: 167.162 bits (422), Expect = 6.358e-41 Identity = 87/168 (51.79%), Postives = 107/168 (63.69%), Query Frame = 1 Query: 133 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTXXXXXXXXXXXXXXXXXXXXXXXXXXGKLLSAKEKPET---CDSNVITPGT 627 MGVPAF+RWL +YP ++V+ ED Q +G PVD ++PNPN EFDNLYLDMNGIIHPC HP+ +PAP + D++F IF+YID IF +VRPR+LLY+AIDGVAPRAKMNQQR+ G + K+K E DSN ITPGT Sbjct: 1 MGVPAFFRWLTKKYPATVVNA-NEDRQRGVDGRRVPVDCTQPNPNFQEFDNLYLDMNGIIHPCTHPEDRPAPKNEDEMFALIFEYIDRIFSIVRPRRLLYMAIDGVAPRAKMNQQRSRRFRASKEMAEKAASIEEQRRRLIAEGIAVPQKKKDEEEAHFDSNCITPGT 167
BLAST of DN617899 vs. ExPASy Swiss-Prot
Match: XRN2_DROME (5'-3' exoribonuclease 2 homolog OS=Drosophila melanogaster GN=Rat1 PE=1 SV=2) HSP 1 Score: 162.54 bits (410), Expect = 1.566e-39 Identity = 89/168 (52.98%), Postives = 109/168 (64.88%), Query Frame = 1 Query: 133 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPV--DVSKPNPNGMEFDNLYLDMNGIIHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTXXXXXXXXXXXXXXXXXXXXXXXXXXG-KLLSAKEKPETCDSNVITPGT 627 MGVPAF+RWL+ +YP I++ E+ QVD + R + D + PNPNG+EFDNLYLDMNGIIHPC HP+ KPAP + D++ +IF+ ID +F +VRPRKLLY+AIDGVAPRAKMNQQR+ G KL KEK E DSN ITPGT Sbjct: 1 MGVPAFFRWLSRKYPSVIIEC-NENKQVDAD-TGRNIYEDPTLPNPNGIEFDNLYLDMNGIIHPCTHPEDKPAPKNEDEMMVAIFECIDRLFGIVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKETTEKRLEIARIREELLSRGCKLPPEKEKGEHFDSNCITPGT 166 The following BLAST results are available for this feature:
BLAST of DN617899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 30
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Sequences
The
following sequences are available for this feature:
EST sequence >DN617899 ID=DN617899; Name=DN617899; organism=Citrus sinensis; type=EST; length=627bpback to top |