DN617899
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN617899 vs. ExPASy Swiss-Prot
Match: XRN2_ASPOR (5'-3' exoribonuclease 2 OS=Aspergillus oryzae GN=rat1 PE=3 SV=3) HSP 1 Score: 157.918 bits (398), Expect = 3.857e-38 Identity = 82/169 (48.52%), Postives = 105/169 (62.13%), Query Frame = 1 Query: 133 MGVPAFYRWLADRYPLSIVDVVEEDP-QVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTXXXXXXXXXXXXXXXXXXXXXXXXXXGK---LLSAKEKPETCDSNVITPGT 627 MGVPA +RWL+++YP I V+EE P +V+GE + PVD ++PNPNG E DNLYLDMNGI+HPC HP+GKP P + ++ IF+Y D + +VRPRKLL +A+DGVAPRAKMNQQR K + + +T DSNVITPGT Sbjct: 1 MGVPALFRWLSNKYPKIISPVIEEQPYEVNGEQI--PVDTTRPNPNGEELDNLYLDMNGIVHPCTHPEGKPPPANEQEMMLEIFNYTDRVVNMVRPRKLLMIAVDGVAPRAKMNQQRARRFRSAQEAKEADEKKEEFRKQFLKKSKGDQEIHEEVIQKTWDSNVITPGT 167
BLAST of DN617899 vs. ExPASy Swiss-Prot
Match: XRN2_ASPFU (5'-3' exoribonuclease 2 OS=Aspergillus fumigatus GN=rat1 PE=3 SV=4) HSP 1 Score: 157.147 bits (396), Expect = 6.579e-38 Identity = 83/171 (48.54%), Postives = 106/171 (61.99%), Query Frame = 1 Query: 133 MGVPAFYRWLADRYPLSIVDVVEEDP-QVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQ-----RTXXXXXXXXXXXXXXXXXXXXXXXXXXGKLLSAKEKPETCDSNVITPGT 627 MGVPA +RWL+++YP I V+EE P +V+GE + PVD++KPNPNG E DNLYLDMNGI+HPC HP+GKP P + ++ IF Y D + +VRPRKLL +A+DGVAPRAKMNQQ R+ + L + +T DSNVITPGT Sbjct: 1 MGVPALFRWLSNKYPKIISPVIEELPYEVNGEEI--PVDITKPNPNGEEMDNLYLDMNGIVHPCTHPEGKPPPANEQEMMVEIFKYTDRVVNMVRPRKLLMIAVDGVAPRAKMNQQRARRFRSAQEAKEADEKKEEFRKMLAKQNGNKVDEELQEEVVKKTWDSNVITPGT 169
BLAST of DN617899 vs. ExPASy Swiss-Prot
Match: XRN2_EMENI (5'-3' exoribonuclease 2 OS=Emericella nidulans GN=rat1 PE=3 SV=3) HSP 1 Score: 156.762 bits (395), Expect = 8.593e-38 Identity = 83/170 (48.82%), Postives = 104/170 (61.18%), Query Frame = 1 Query: 133 MGVPAFYRWLADRYPLSIVDVVEEDPQ-VDGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTXXXXXXXXXXXXXXXXXXXXXXXXXXG----KLLSAKEKPETCDSNVITPGT 627 MGVPA +RWL+ +YP I V+EE PQ V+GE + PVD++ PNPNG E DNLYLDMNGI+HPC HP+GKP P + ++ IF Y D + +VRPRKLL +A+DGVAPRAKMNQQR ++L + +T DSNVITPGT Sbjct: 1 MGVPALFRWLSKKYPKIISSVIEELPQEVNGEEI--PVDITGPNPNGEEMDNLYLDMNGIVHPCTHPEGKPPPANEQEMMIEIFKYTDRVVNMVRPRKLLMIAVDGVAPRAKMNQQRARRFRSAQEAREQDEKKQEFQRMLAKQNGDKEQMLQEEVIQKTWDSNVITPGT 168
BLAST of DN617899 vs. ExPASy Swiss-Prot
Match: XRN2_CANGA (5'-3' exoribonuclease 2 OS=Candida glabrata GN=RAT1 PE=3 SV=3) HSP 1 Score: 155.606 bits (392), Expect = 1.914e-37 Identity = 80/167 (47.90%), Postives = 107/167 (64.07%), Query Frame = 1 Query: 133 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTXXXXXXXXXXXXXXXXXXXXXXXXXXGKLL--SAKEKPETCDSNVITPGT 627 MGVP+F+RWL+ +YP I+ V E+PQ +GVA P+D + PNPNG E DNLYLDMNGI+HPC HP+ KP P + DD+ ++F+Y + + + RPRK+L +A+DGVAPRAKMNQQR+ G+++ S K K +T DSN ITPGT Sbjct: 1 MGVPSFFRWLSRKYP-KIISPVLEEPQQLVDGVALPIDYAGPNPNG-ELDNLYLDMNGIVHPCSHPENKPPPETEDDMLLAVFEYTNRVLNMARPRKVLVIAVDGVAPRAKMNQQRSRRFRSARDAEIENEAREEIMRQKEQLGQIIDDSVKNK-KTWDSNAITPGT 164
BLAST of DN617899 vs. ExPASy Swiss-Prot
Match: XRN2_USTMA (5'-3' exoribonuclease 2 OS=Ustilago maydis GN=RAT1 PE=3 SV=3) HSP 1 Score: 154.836 bits (390), Expect = 3.265e-37 Identity = 80/171 (46.78%), Postives = 101/171 (59.06%), Query Frame = 1 Query: 133 MGVPAFYRWLADRYPLSIVDVVEEDPQV----DGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTXXXXXXXXXXXXXXXXXXXXXXXXXXGKLLSAKEK--PETCDSNVITPGT 627 MGVPA +RWL+ +YP + V EEDP+ DG + P+D S PNPNG EFD LYLDMNGI+HPC HP+GKPAP + +++ +F Y + + +VRPR+LL +AIDGVAPRAKMNQQR+ G + EK DSN ITPGT Sbjct: 1 MGVPALFRWLSKKYPRIVSSVQEEDPKTAPGPDGTEITLPLDTSTPNPNGEEFDCLYLDMNGIVHPCTHPEGKPAPETEEEMMVEVFAYTERVVNMVRPRRLLMMAIDGVAPRAKMNQQRSRRFRAAKEAREKHEEEQAALAEWKAKGLGATDDEKKSKRAWDSNAITPGT 171
BLAST of DN617899 vs. ExPASy Swiss-Prot
Match: XRN2_GIBZE (5'-3' exoribonuclease 2 OS=Gibberella zeae GN=RAT1 PE=3 SV=3) HSP 1 Score: 154.066 bits (388), Expect = 5.570e-37 Identity = 67/117 (57.26%), Postives = 88/117 (75.21%), Query Frame = 1 Query: 133 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRT 483 MG+PA +RWL+ RYP I V+E+ P V +G PVD ++PNPNG EFDNLYLDMNGI+HPC HP+ +PAP +++ +F Y D + +VRPRK+L +A+DGVAPRAKMNQQR+ Sbjct: 1 MGIPAAFRWLSTRYPKIISPVIEDQPLVMEDGSTIPVDTTRPNPNGEEFDNLYLDMNGIVHPCSHPEDRPAPKDEEEMMMEVFRYTDRVVNMVRPRKILMIAVDGVAPRAKMNQQRS 117
BLAST of DN617899 vs. ExPASy Swiss-Prot
Match: XRN2_NEUCR (5'-3' exoribonuclease 2 OS=Neurospora crassa GN=rat-1 PE=3 SV=3) HSP 1 Score: 153.68 bits (387), Expect = 7.274e-37 Identity = 67/117 (57.26%), Postives = 87/117 (74.36%), Query Frame = 1 Query: 133 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRT 483 MG+PA +RWL+ +YP I V+E+ P +G PVD +KPNPNG EFDNLYLDMNGI+HPC HP+ +PAP +++ +F Y D + +VRPRKLL +A+DGVAPRAKMNQQR+ Sbjct: 1 MGIPAAFRWLSTKYPKIISPVIEDQPITMPDGTVIPVDATKPNPNGEEFDNLYLDMNGIVHPCSHPEDRPAPKDEEEMMVEVFKYTDRVVNMVRPRKLLMIAVDGVAPRAKMNQQRS 117
BLAST of DN617899 vs. ExPASy Swiss-Prot
Match: XRN2_YEAST (5'-3' exoribonuclease 2 OS=Saccharomyces cerevisiae GN=RAT1 PE=1 SV=3) HSP 1 Score: 152.525 bits (384), Expect = 1.621e-36 Identity = 77/166 (46.39%), Postives = 103/166 (62.05%), Query Frame = 1 Query: 133 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTXXXXXXXXXXXXXXXXXXXXXXXXXXGKLL-SAKEKPETCDSNVITPGT 627 MGVP+F+RWL+ +YP I V+EE PQ+ +GV P+D S NPNG E DNLYLDMNGI+HPC HP+ KP P + D++ ++F+Y + + + RPRK+L +A+DGVAPRAKMNQQR G+++ A +T DSN ITPGT Sbjct: 1 MGVPSFFRWLSRKYPKIISPVLEEQPQIV-DGVILPLDYSASNPNG-ELDNLYLDMNGIVHPCSHPENKPPPETEDEMLLAVFEYTNRVLNMARPRKVLVMAVDGVAPRAKMNQQRARRFRSARDAQIENEAREEIMRQREEVGEIIDDAVRNKKTWDSNAITPGT 164
BLAST of DN617899 vs. ExPASy Swiss-Prot
Match: XRN2_ASHGO (5'-3' exoribonuclease 2 OS=Ashbya gossypii GN=RAT1 PE=3 SV=3) HSP 1 Score: 152.525 bits (384), Expect = 1.621e-36 Identity = 76/166 (45.78%), Postives = 106/166 (63.86%), Query Frame = 1 Query: 133 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTXXXXXXXXXXXXXXXXXXXXXXXXXXGKLL-SAKEKPETCDSNVITPGT 627 MGVP+F+RWL+ +YP I V+E+ PQV +GV P+D S NPNG E DNLYLDMNGI+HPC HP+ KPAP + D++ ++F+Y + + + RPRK+L +A+DGVAPRAKMNQQR+ G+++ A + ++ D+N ITPGT Sbjct: 1 MGVPSFFRWLSRKYPKIISPVIEDTPQVV-DGVKLPIDYSAANPNG-ELDNLYLDMNGIVHPCSHPENKPAPETEDEMLLAVFEYTNRVLNMARPRKVLMIAVDGVAPRAKMNQQRSRRFRSARDAKLANEEKARVLAEREAYGEMIDDAVKAKKSWDTNAITPGT 164
BLAST of DN617899 vs. ExPASy Swiss-Prot
Match: XRN2_KLULA (5'-3' exoribonuclease 2 OS=Kluyveromyces lactis GN=RAT1 PE=3 SV=3) HSP 1 Score: 149.828 bits (377), Expect = 1.050e-35 Identity = 76/166 (45.78%), Postives = 102/166 (61.45%), Query Frame = 1 Query: 133 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTXXXXXXXXXXXXXXXXXXXXXXXXXXGKLLSAKEK-PETCDSNVITPGT 627 MGVP+F+RWL+ +YP I V+EE P ++ +GV P+D S NPNG E DNLYLDMNGI+HPC HP+ KP P + D++ ++F+Y + + + RPRK+L +A+DGVAPRAKMNQQR G+ + K +T DSN ITPGT Sbjct: 1 MGVPSFFRWLSRKYPKIISPVLEEYPVIE-DGVQLPLDYSSANPNG-ELDNLYLDMNGIVHPCSHPENKPPPETEDEMLLAVFEYTNRVLNMARPRKVLMIAVDGVAPRAKMNQQRARRFRSARDAKLQNEAREQVLREREDYGETIDENVKSKKTWDSNAITPGT 164 The following BLAST results are available for this feature:
BLAST of DN617899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 30
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Sequences
The
following sequences are available for this feature:
EST sequence >DN617899 ID=DN617899; Name=DN617899; organism=Citrus sinensis; type=EST; length=627bpback to top |