DN617899

Overview
NameDN617899
Unique NameDN617899
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617899 vs. ExPASy Swiss-Prot
Match: XRN2_ASPOR (5'-3' exoribonuclease 2 OS=Aspergillus oryzae GN=rat1 PE=3 SV=3)

HSP 1 Score: 157.918 bits (398), Expect = 3.857e-38
Identity = 82/169 (48.52%), Postives = 105/169 (62.13%), Query Frame = 1
Query:  133 MGVPAFYRWLADRYPLSIVDVVEEDP-QVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTXXXXXXXXXXXXXXXXXXXXXXXXXXGK---LLSAKEKPETCDSNVITPGT 627
            MGVPA +RWL+++YP  I  V+EE P +V+GE +  PVD ++PNPNG E DNLYLDMNGI+HPC HP+GKP P +  ++   IF+Y D +  +VRPRKLL +A+DGVAPRAKMNQQR                            K    +  +   +T DSNVITPGT
Sbjct:    1 MGVPALFRWLSNKYPKIISPVIEEQPYEVNGEQI--PVDTTRPNPNGEELDNLYLDMNGIVHPCTHPEGKPPPANEQEMMLEIFNYTDRVVNMVRPRKLLMIAVDGVAPRAKMNQQRARRFRSAQEAKEADEKKEEFRKQFLKKSKGDQEIHEEVIQKTWDSNVITPGT 167          
BLAST of DN617899 vs. ExPASy Swiss-Prot
Match: XRN2_ASPFU (5'-3' exoribonuclease 2 OS=Aspergillus fumigatus GN=rat1 PE=3 SV=4)

HSP 1 Score: 157.147 bits (396), Expect = 6.579e-38
Identity = 83/171 (48.54%), Postives = 106/171 (61.99%), Query Frame = 1
Query:  133 MGVPAFYRWLADRYPLSIVDVVEEDP-QVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQ-----RTXXXXXXXXXXXXXXXXXXXXXXXXXXGKLLSAKEKPETCDSNVITPGT 627
            MGVPA +RWL+++YP  I  V+EE P +V+GE +  PVD++KPNPNG E DNLYLDMNGI+HPC HP+GKP P +  ++   IF Y D +  +VRPRKLL +A+DGVAPRAKMNQQ     R+                           + L  +   +T DSNVITPGT
Sbjct:    1 MGVPALFRWLSNKYPKIISPVIEELPYEVNGEEI--PVDITKPNPNGEEMDNLYLDMNGIVHPCTHPEGKPPPANEQEMMVEIFKYTDRVVNMVRPRKLLMIAVDGVAPRAKMNQQRARRFRSAQEAKEADEKKEEFRKMLAKQNGNKVDEELQEEVVKKTWDSNVITPGT 169          
BLAST of DN617899 vs. ExPASy Swiss-Prot
Match: XRN2_EMENI (5'-3' exoribonuclease 2 OS=Emericella nidulans GN=rat1 PE=3 SV=3)

HSP 1 Score: 156.762 bits (395), Expect = 8.593e-38
Identity = 83/170 (48.82%), Postives = 104/170 (61.18%), Query Frame = 1
Query:  133 MGVPAFYRWLADRYPLSIVDVVEEDPQ-VDGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTXXXXXXXXXXXXXXXXXXXXXXXXXXG----KLLSAKEKPETCDSNVITPGT 627
            MGVPA +RWL+ +YP  I  V+EE PQ V+GE +  PVD++ PNPNG E DNLYLDMNGI+HPC HP+GKP P +  ++   IF Y D +  +VRPRKLL +A+DGVAPRAKMNQQR                                ++L  +   +T DSNVITPGT
Sbjct:    1 MGVPALFRWLSKKYPKIISSVIEELPQEVNGEEI--PVDITGPNPNGEEMDNLYLDMNGIVHPCTHPEGKPPPANEQEMMIEIFKYTDRVVNMVRPRKLLMIAVDGVAPRAKMNQQRARRFRSAQEAREQDEKKQEFQRMLAKQNGDKEQMLQEEVIQKTWDSNVITPGT 168          
BLAST of DN617899 vs. ExPASy Swiss-Prot
Match: XRN2_CANGA (5'-3' exoribonuclease 2 OS=Candida glabrata GN=RAT1 PE=3 SV=3)

HSP 1 Score: 155.606 bits (392), Expect = 1.914e-37
Identity = 80/167 (47.90%), Postives = 107/167 (64.07%), Query Frame = 1
Query:  133 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTXXXXXXXXXXXXXXXXXXXXXXXXXXGKLL--SAKEKPETCDSNVITPGT 627
            MGVP+F+RWL+ +YP  I+  V E+PQ   +GVA P+D + PNPNG E DNLYLDMNGI+HPC HP+ KP P + DD+  ++F+Y + +  + RPRK+L +A+DGVAPRAKMNQQR+                          G+++  S K K +T DSN ITPGT
Sbjct:    1 MGVPSFFRWLSRKYP-KIISPVLEEPQQLVDGVALPIDYAGPNPNG-ELDNLYLDMNGIVHPCSHPENKPPPETEDDMLLAVFEYTNRVLNMARPRKVLVIAVDGVAPRAKMNQQRSRRFRSARDAEIENEAREEIMRQKEQLGQIIDDSVKNK-KTWDSNAITPGT 164          
BLAST of DN617899 vs. ExPASy Swiss-Prot
Match: XRN2_USTMA (5'-3' exoribonuclease 2 OS=Ustilago maydis GN=RAT1 PE=3 SV=3)

HSP 1 Score: 154.836 bits (390), Expect = 3.265e-37
Identity = 80/171 (46.78%), Postives = 101/171 (59.06%), Query Frame = 1
Query:  133 MGVPAFYRWLADRYPLSIVDVVEEDPQV----DGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTXXXXXXXXXXXXXXXXXXXXXXXXXXGKLLSAKEK--PETCDSNVITPGT 627
            MGVPA +RWL+ +YP  +  V EEDP+     DG  +  P+D S PNPNG EFD LYLDMNGI+HPC HP+GKPAP + +++   +F Y + +  +VRPR+LL +AIDGVAPRAKMNQQR+                          G   +  EK      DSN ITPGT
Sbjct:    1 MGVPALFRWLSKKYPRIVSSVQEEDPKTAPGPDGTEITLPLDTSTPNPNGEEFDCLYLDMNGIVHPCTHPEGKPAPETEEEMMVEVFAYTERVVNMVRPRRLLMMAIDGVAPRAKMNQQRSRRFRAAKEAREKHEEEQAALAEWKAKGLGATDDEKKSKRAWDSNAITPGT 171          
BLAST of DN617899 vs. ExPASy Swiss-Prot
Match: XRN2_GIBZE (5'-3' exoribonuclease 2 OS=Gibberella zeae GN=RAT1 PE=3 SV=3)

HSP 1 Score: 154.066 bits (388), Expect = 5.570e-37
Identity = 67/117 (57.26%), Postives = 88/117 (75.21%), Query Frame = 1
Query:  133 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRT 483
            MG+PA +RWL+ RYP  I  V+E+ P V  +G   PVD ++PNPNG EFDNLYLDMNGI+HPC HP+ +PAP   +++   +F Y D +  +VRPRK+L +A+DGVAPRAKMNQQR+
Sbjct:    1 MGIPAAFRWLSTRYPKIISPVIEDQPLVMEDGSTIPVDTTRPNPNGEEFDNLYLDMNGIVHPCSHPEDRPAPKDEEEMMMEVFRYTDRVVNMVRPRKILMIAVDGVAPRAKMNQQRS 117          
BLAST of DN617899 vs. ExPASy Swiss-Prot
Match: XRN2_NEUCR (5'-3' exoribonuclease 2 OS=Neurospora crassa GN=rat-1 PE=3 SV=3)

HSP 1 Score: 153.68 bits (387), Expect = 7.274e-37
Identity = 67/117 (57.26%), Postives = 87/117 (74.36%), Query Frame = 1
Query:  133 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRT 483
            MG+PA +RWL+ +YP  I  V+E+ P    +G   PVD +KPNPNG EFDNLYLDMNGI+HPC HP+ +PAP   +++   +F Y D +  +VRPRKLL +A+DGVAPRAKMNQQR+
Sbjct:    1 MGIPAAFRWLSTKYPKIISPVIEDQPITMPDGTVIPVDATKPNPNGEEFDNLYLDMNGIVHPCSHPEDRPAPKDEEEMMVEVFKYTDRVVNMVRPRKLLMIAVDGVAPRAKMNQQRS 117          
BLAST of DN617899 vs. ExPASy Swiss-Prot
Match: XRN2_YEAST (5'-3' exoribonuclease 2 OS=Saccharomyces cerevisiae GN=RAT1 PE=1 SV=3)

HSP 1 Score: 152.525 bits (384), Expect = 1.621e-36
Identity = 77/166 (46.39%), Postives = 103/166 (62.05%), Query Frame = 1
Query:  133 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTXXXXXXXXXXXXXXXXXXXXXXXXXXGKLL-SAKEKPETCDSNVITPGT 627
            MGVP+F+RWL+ +YP  I  V+EE PQ+  +GV  P+D S  NPNG E DNLYLDMNGI+HPC HP+ KP P + D++  ++F+Y + +  + RPRK+L +A+DGVAPRAKMNQQR                           G+++  A    +T DSN ITPGT
Sbjct:    1 MGVPSFFRWLSRKYPKIISPVLEEQPQIV-DGVILPLDYSASNPNG-ELDNLYLDMNGIVHPCSHPENKPPPETEDEMLLAVFEYTNRVLNMARPRKVLVMAVDGVAPRAKMNQQRARRFRSARDAQIENEAREEIMRQREEVGEIIDDAVRNKKTWDSNAITPGT 164          
BLAST of DN617899 vs. ExPASy Swiss-Prot
Match: XRN2_ASHGO (5'-3' exoribonuclease 2 OS=Ashbya gossypii GN=RAT1 PE=3 SV=3)

HSP 1 Score: 152.525 bits (384), Expect = 1.621e-36
Identity = 76/166 (45.78%), Postives = 106/166 (63.86%), Query Frame = 1
Query:  133 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTXXXXXXXXXXXXXXXXXXXXXXXXXXGKLL-SAKEKPETCDSNVITPGT 627
            MGVP+F+RWL+ +YP  I  V+E+ PQV  +GV  P+D S  NPNG E DNLYLDMNGI+HPC HP+ KPAP + D++  ++F+Y + +  + RPRK+L +A+DGVAPRAKMNQQR+                          G+++  A +  ++ D+N ITPGT
Sbjct:    1 MGVPSFFRWLSRKYPKIISPVIEDTPQVV-DGVKLPIDYSAANPNG-ELDNLYLDMNGIVHPCSHPENKPAPETEDEMLLAVFEYTNRVLNMARPRKVLMIAVDGVAPRAKMNQQRSRRFRSARDAKLANEEKARVLAEREAYGEMIDDAVKAKKSWDTNAITPGT 164          
BLAST of DN617899 vs. ExPASy Swiss-Prot
Match: XRN2_KLULA (5'-3' exoribonuclease 2 OS=Kluyveromyces lactis GN=RAT1 PE=3 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 1.050e-35
Identity = 76/166 (45.78%), Postives = 102/166 (61.45%), Query Frame = 1
Query:  133 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTXXXXXXXXXXXXXXXXXXXXXXXXXXGKLLSAKEK-PETCDSNVITPGT 627
            MGVP+F+RWL+ +YP  I  V+EE P ++ +GV  P+D S  NPNG E DNLYLDMNGI+HPC HP+ KP P + D++  ++F+Y + +  + RPRK+L +A+DGVAPRAKMNQQR                           G+ +    K  +T DSN ITPGT
Sbjct:    1 MGVPSFFRWLSRKYPKIISPVLEEYPVIE-DGVQLPLDYSSANPNG-ELDNLYLDMNGIVHPCSHPENKPPPETEDEMLLAVFEYTNRVLNMARPRKVLMIAVDGVAPRAKMNQQRARRFRSARDAKLQNEAREQVLREREDYGETIDENVKSKKTWDSNAITPGT 164          
The following BLAST results are available for this feature:
BLAST of DN617899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
XRN2_ASPOR3.857e-3848.525'-3' exoribonuclease 2 OS=Aspergillus oryzae GN=r... [more]
XRN2_ASPFU6.579e-3848.545'-3' exoribonuclease 2 OS=Aspergillus fumigatus G... [more]
XRN2_EMENI8.593e-3848.825'-3' exoribonuclease 2 OS=Emericella nidulans GN=... [more]
XRN2_CANGA1.914e-3747.905'-3' exoribonuclease 2 OS=Candida glabrata GN=RAT... [more]
XRN2_USTMA3.265e-3746.785'-3' exoribonuclease 2 OS=Ustilago maydis GN=RAT1... [more]
XRN2_GIBZE5.570e-3757.265'-3' exoribonuclease 2 OS=Gibberella zeae GN=RAT1... [more]
XRN2_NEUCR7.274e-3757.265'-3' exoribonuclease 2 OS=Neurospora crassa GN=ra... [more]
XRN2_YEAST1.621e-3646.395'-3' exoribonuclease 2 OS=Saccharomyces cerevisia... [more]
XRN2_ASHGO1.621e-3645.785'-3' exoribonuclease 2 OS=Ashbya gossypii GN=RAT1... [more]
XRN2_KLULA1.050e-3545.785'-3' exoribonuclease 2 OS=Kluyveromyces lactis GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01N10_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001N10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617899 ID=DN617899; Name=DN617899; organism=Citrus sinensis; type=EST; length=627bp
CTCATTTTCTATTTTCCGTCTCTAGTGCACTCATCTTCCTATTTTCTAAA
TTTCTAATTTAATTTTAGTTTCATTAAAAAAAATTATTATTTCAACCGAA
CCGTACGGATCCGGACCAAAGAACTCTGAGCCATGGGAGTGCCGGCGTTT
TACCGGTGGTTAGCGGATCGCTATCCGCTGTCGATTGTTGACGTCGTGGA
GGAGGATCCTCAAGTTGACGGCGAAGGAGTCGCCAGACCTGTTGACGTTT
CGAAACCTAACCCTAACGGCATGGAATTCGATAATTTGTATTTGGATATG
AACGGAATTATTCATCCTTGTTTTCACCCCGATGGCAAGCCTGCCCCTAC
CTCGTATGATGATGTATTTAAATCTATCTTTGATTACATTGATCATATTT
TCTTATTGGTTCGTCCGAGAAAGCTTCTCTATTTGGCAATTGATGGGGTG
GCGCCTAGAGCTAAAATGAATCAGCAACGTACTCGACGTTTCAGAGCTGC
AAAAGATGCTGCTGAGGCTGAAGCTGAAGAGGAAAGGCTGAGGAAGGAAT
TTGAAGAAGCAGGGAAACTCTTATCTGCTAAAGAAAAACCTGAAACATGT
GATTCAAATGTTATTACTCCAGGCACT
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