DN617899

Overview
NameDN617899
Unique NameDN617899
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617899 vs. ExPASy Swiss-Prot
Match: XRN2_CHAGB (5'-3' exoribonuclease 2 OS=Chaetomium globosum GN=RAT1 PE=3 SV=3)

HSP 1 Score: 149.443 bits (376), Expect = 1.372e-35
Identity = 80/172 (46.51%), Postives = 104/172 (60.47%), Query Frame = 1
Query:  133 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAI-DGVAPRAKMNQQRTXXXXXXXXXXXXXXXXXXXXXXXXXXGKLLSAKEKP------ETCDSNVITPGT 627
            MG+PA +RWL+ +YP  I  VVEE   V  +G   PVD ++PNPNG EFDNLYLDMNGI+HPC HP+ +PAP+  +++   +F Y + +  +VRPRKLL +A+ DGVAPRAKMNQQR+                           K  +AKE+P      +  DSN ITPGT
Sbjct:    1 MGIPAAFRWLSTKYPKIISPVVEEKALVMEDGTVVPVDATQPNPNGEEFDNLYLDMNGIVHPCSHPEDRPAPSDEEEMMVEVFKYTERVVNMVRPRKLLMIAVADGVAPRAKMNQQRSRRFRAAQDAKEKEEDKQQLLKMLQKE-KGSTAKEEPIETVVKKAFDSNSITPGT 171          
BLAST of DN617899 vs. ExPASy Swiss-Prot
Match: XRN2_CRYNE (5'-3' exoribonuclease 2 OS=Cryptococcus neoformans GN=RAT1 PE=3 SV=3)

HSP 1 Score: 147.132 bits (370), Expect = 6.809e-35
Identity = 75/170 (44.12%), Postives = 100/170 (58.82%), Query Frame = 1
Query:  133 MGVPAFYRWLADRYPLSIVDVVEEDPQV----DGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTXXXXXXXXXXXXXXXXXXXXXXXXXXGKLLSAK-EKPETCDSNVITPGT 627
            MGVPA +RWL+ +YP  +  V E+ P+     DGE V  P+    PNPNG E DNLYLDMNGI+HPC HP+G+PAP + +++   IF Y + +  + RPRK+L +AIDGVAPRAKMNQQR+                          G  +S +    ++ D+N ITPGT
Sbjct:    1 MGVPALFRWLSKKYPKIVERVKEDTPKKIRGPDGEIVEEPIRYENPNPNGFEVDNLYLDMNGIVHPCTHPEGRPAPETEEEMMVEIFKYTERVVNMCRPRKVLMMAIDGVAPRAKMNQQRSRRFRAAQEAADKEEERREAIKLFEAMGHAVSEETANHKSWDTNAITPGT 170          
BLAST of DN617899 vs. ExPASy Swiss-Prot
Match: XRN2_SCHPO (5'-3' exoribonuclease 2 OS=Schizosaccharomyces pombe GN=dhp1 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.736e-33
Identity = 73/166 (43.98%), Postives = 99/166 (59.64%), Query Frame = 1
Query:  133 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTXXXXXXXXXXXXXXXXXXXXXXXXXXGKLLSAK-EKPETCDSNVITPGT 627
            MGVPA +R L+ ++   I  V+E   +   +G     D+S PNPNG+E DNLYLDMNGI+HPC HP+ +PAP + D++  ++F+Y D I  +VRPR+LL++AIDGVAPRAKMNQQR+                          G  +     K ++ DSN ITPGT
Sbjct:    1 MGVPALFRLLSRKFAKVITPVIEAPTEKLPDGTEIEPDLSLPNPNGVECDNLYLDMNGIVHPCSHPEDRPAPETEDEMMVAVFEYTDRILAMVRPRQLLFIAIDGVAPRAKMNQQRSRRFRSSREAALKEEELQAFIEEAKQQGIPIDENATKKKSWDSNCITPGT 166          
BLAST of DN617899 vs. ExPASy Swiss-Prot
Match: XRN2_CANAL (5'-3' exoribonuclease 2 OS=Candida albicans GN=RAT1 PE=3 SV=3)

HSP 1 Score: 137.887 bits (346), Expect = 4.131e-32
Identity = 75/167 (44.91%), Postives = 97/167 (58.08%), Query Frame = 1
Query:  133 MGVPAFYRWLADRYPLSIVDVVEE-DPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTXXXXXXXXXXXXXXXXXXXXXXXXXXGKLLS-AKEKPETCDSNVITPGT 627
            MGVPA +RWL+ +YP  I  VVEE D ++ G           PNPNG E DNLYLDMNGI+HPC HP+ K  P + D++F  IF Y D + ++ RPRK+L +A+DGVAPRAKMNQQR                           G++++ A +  +  DSN ITPGT
Sbjct:    1 MGVPALFRWLSRKYPKIISPVVEEEDHEIGG------AKYENPNPNG-EIDNLYLDMNGIVHPCSHPEHKKPPETEDEMFLDIFKYTDRVLMMARPRKVLMIAVDGVAPRAKMNQQRARRFRAAKDAELKAKQLEIEVQERELRGEIINDAIKGKKQWDSNAITPGT 160          
BLAST of DN617899 vs. ExPASy Swiss-Prot
Match: XRN2_DEBHA (5'-3' exoribonuclease 2 OS=Debaryomyces hansenii GN=RAT1 PE=3 SV=4)

HSP 1 Score: 137.117 bits (344), Expect = 7.046e-32
Identity = 76/166 (45.78%), Postives = 99/166 (59.64%), Query Frame = 1
Query:  133 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTXXXXXXXXXXXXXXXXXXXXXXXXXXGKLL-SAKEKPETCDSNVITPGT 627
            MGVPA +RWL+ +YP  I  VVE+D   +  G A+    S PNPNG E DNLYLDMNGI+HPC HP+ K  P + D++F  +F Y D + L+ RPRK+L +A+DGVAPRAKMNQQR+                          G+ +  A +  ++ DSN ITPGT
Sbjct:    1 MGVPALFRWLSRKYPKIISPVVEDDVTQE-IGAAQ---FSDPNPNG-ELDNLYLDMNGIVHPCSHPEHKLPPETEDEMFLDVFKYTDRVLLMARPRKVLMIAVDGVAPRAKMNQQRSRRFRSAQDAKIAHEEKERQIRERESRGESIDDAIKGKKSWDSNAITPGT 161          
BLAST of DN617899 vs. ExPASy Swiss-Prot
Match: XRN2_YARLI (5'-3' exoribonuclease 2 OS=Yarrowia lipolytica GN=RAT1 PE=3 SV=3)

HSP 1 Score: 131.339 bits (329), Expect = 3.866e-30
Identity = 65/117 (55.56%), Postives = 84/117 (71.79%), Query Frame = 1
Query:  133 MGVPAFYRWLADRYPLSIVDVVEEDPQ-VDGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQR 480
            MGVP  YR L+ + P  + DV+E++   VDGE +    D S PNPNG E DNLYLDMNGI+HPC HP+G+ AP S D++  ++F Y + +  + RPRK+L +AIDGVAPRAKMNQQR
Sbjct:    1 MGVPGLYRHLSQKCPKIVSDVIEDETTIVDGEEIPGS-DYSAPNPNG-ELDNLYLDMNGIVHPCTHPEGEEAPPSEDEMLLAVFKYTERVLNVCRPRKVLMMAIDGVAPRAKMNQQR 115          
BLAST of DN617899 vs. ExPASy Swiss-Prot
Match: XRN1_MOUSE (5'-3' exoribonuclease 1 OS=Mus musculus GN=Xrn1 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.205e-23
Identity = 71/173 (41.04%), Postives = 90/173 (52.02%), Query Frame = 1
Query:  133 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFHP--DGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTXXXXXXXXXXXXXXXXXXXXXXXXXXGKLLSAKEKPETC------DSNVITPGT 627
            MGVP FYRW+++RYP  + +VV+E  Q+                   EFDNLYLDMNGIIH C HP  D      S D +F  IF Y++ +F +++PRK+ ++A+DGVAPRAKMNQQR                            K+  A EK ET       DSN ITPGT
Sbjct:    1 MGVPKFYRWISERYPC-LSEVVKEH-QIP------------------EFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQR----------------GRRFRSAKEAEDKIKKAIEKGETLPTEARFDSNCITPGT 137          
BLAST of DN617899 vs. ExPASy Swiss-Prot
Match: XRN1_HUMAN (5'-3' exoribonuclease 1 OS=Homo sapiens GN=XRN1 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.205e-23
Identity = 71/173 (41.04%), Postives = 90/173 (52.02%), Query Frame = 1
Query:  133 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFHP--DGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTXXXXXXXXXXXXXXXXXXXXXXXXXXGKLLSAKEKPETC------DSNVITPGT 627
            MGVP FYRW+++RYP  + +VV+E  Q+                   EFDNLYLDMNGIIH C HP  D      S D +F  IF Y++ +F +++PRK+ ++A+DGVAPRAKMNQQR                            K+  A EK ET       DSN ITPGT
Sbjct:    1 MGVPKFYRWISERYPC-LSEVVKEH-QIP------------------EFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQR----------------GRRFRSAKEAEDKIKKAIEKGETLPTEARFDSNCITPGT 137          
BLAST of DN617899 vs. ExPASy Swiss-Prot
Match: XRN1_SCHPO (5'-3' exoribonuclease 1 OS=Schizosaccharomyces pombe GN=exo2 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.739e-22
Identity = 53/119 (44.54%), Postives = 75/119 (63.03%), Query Frame = 1
Query:  133 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFHP--DGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRT 483
            MG+P F+RW+++RYPL    ++E D                      EFDNLYLDMNGI+H C H   D    P   ++++ +IF+YI+H+F  ++P+KLLY+A+DG APRAKMNQQR+
Sbjct:    1 MGIPKFFRWMSERYPLCS-QLIEND-------------------RIPEFDNLYLDMNGILHNCTHKNDDHSSPPLPEEEMYIAIFNYIEHLFEKIKPKKLLYMAVDGCAPRAKMNQQRS 99          
BLAST of DN617899 vs. ExPASy Swiss-Prot
Match: XRN1_YEAST (5'-3' exoribonuclease 1 OS=Saccharomyces cerevisiae GN=KEM1 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.737e-20
Identity = 62/167 (37.13%), Postives = 83/167 (49.70%), Query Frame = 1
Query:  133 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFH--PDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTXXXXXXXXXXXXXXXXXXXXXXXXXXGKLLSAKEKPETCDSNVITPGT 627
            MG+P F+R++++R+P+ I+ ++E        G   P           EFDNLYLDMN I+H C H   D      + ++VF  I  YIDH+F  ++P+K+ Y+AIDGVAPRAKMNQQR                                   K E  DSN ITPGT
Sbjct:    1 MGIPKFFRYISERWPM-ILQLIE--------GTQIP-----------EFDNLYLDMNSILHNCTHGNDDDVTKRLTEEEVFAKICTYIDHLFQTIKPKKIFYMAIDGVAPRAKMNQQRARRFRTAMDAEKALKKAIENGDEI----------PKGEPFDSNSITPGT 137          
The following BLAST results are available for this feature:
BLAST of DN617899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
XRN2_CHAGB1.372e-3546.515'-3' exoribonuclease 2 OS=Chaetomium globosum GN=... [more]
XRN2_CRYNE6.809e-3544.125'-3' exoribonuclease 2 OS=Cryptococcus neoformans... [more]
XRN2_SCHPO3.736e-3343.985'-3' exoribonuclease 2 OS=Schizosaccharomyces pom... [more]
XRN2_CANAL4.131e-3244.915'-3' exoribonuclease 2 OS=Candida albicans GN=RAT... [more]
XRN2_DEBHA7.046e-3245.785'-3' exoribonuclease 2 OS=Debaryomyces hansenii G... [more]
XRN2_YARLI3.866e-3055.565'-3' exoribonuclease 2 OS=Yarrowia lipolytica GN=... [more]
XRN1_MOUSE1.205e-2341.045'-3' exoribonuclease 1 OS=Mus musculus GN=Xrn1 PE... [more]
XRN1_HUMAN1.205e-2341.045'-3' exoribonuclease 1 OS=Homo sapiens GN=XRN1 PE... [more]
XRN1_SCHPO1.739e-2244.545'-3' exoribonuclease 1 OS=Schizosaccharomyces pom... [more]
XRN1_YEAST4.737e-2037.135'-3' exoribonuclease 1 OS=Saccharomyces cerevisia... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01N10_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001N10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617899 ID=DN617899; Name=DN617899; organism=Citrus sinensis; type=EST; length=627bp
CTCATTTTCTATTTTCCGTCTCTAGTGCACTCATCTTCCTATTTTCTAAA
TTTCTAATTTAATTTTAGTTTCATTAAAAAAAATTATTATTTCAACCGAA
CCGTACGGATCCGGACCAAAGAACTCTGAGCCATGGGAGTGCCGGCGTTT
TACCGGTGGTTAGCGGATCGCTATCCGCTGTCGATTGTTGACGTCGTGGA
GGAGGATCCTCAAGTTGACGGCGAAGGAGTCGCCAGACCTGTTGACGTTT
CGAAACCTAACCCTAACGGCATGGAATTCGATAATTTGTATTTGGATATG
AACGGAATTATTCATCCTTGTTTTCACCCCGATGGCAAGCCTGCCCCTAC
CTCGTATGATGATGTATTTAAATCTATCTTTGATTACATTGATCATATTT
TCTTATTGGTTCGTCCGAGAAAGCTTCTCTATTTGGCAATTGATGGGGTG
GCGCCTAGAGCTAAAATGAATCAGCAACGTACTCGACGTTTCAGAGCTGC
AAAAGATGCTGCTGAGGCTGAAGCTGAAGAGGAAAGGCTGAGGAAGGAAT
TTGAAGAAGCAGGGAAACTCTTATCTGCTAAAGAAAAACCTGAAACATGT
GATTCAAATGTTATTACTCCAGGCACT
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