DN617899
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN617899 vs. ExPASy Swiss-Prot
Match: XRN2_CHAGB (5'-3' exoribonuclease 2 OS=Chaetomium globosum GN=RAT1 PE=3 SV=3) HSP 1 Score: 149.443 bits (376), Expect = 1.372e-35 Identity = 80/172 (46.51%), Postives = 104/172 (60.47%), Query Frame = 1 Query: 133 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAI-DGVAPRAKMNQQRTXXXXXXXXXXXXXXXXXXXXXXXXXXGKLLSAKEKP------ETCDSNVITPGT 627 MG+PA +RWL+ +YP I VVEE V +G PVD ++PNPNG EFDNLYLDMNGI+HPC HP+ +PAP+ +++ +F Y + + +VRPRKLL +A+ DGVAPRAKMNQQR+ K +AKE+P + DSN ITPGT Sbjct: 1 MGIPAAFRWLSTKYPKIISPVVEEKALVMEDGTVVPVDATQPNPNGEEFDNLYLDMNGIVHPCSHPEDRPAPSDEEEMMVEVFKYTERVVNMVRPRKLLMIAVADGVAPRAKMNQQRSRRFRAAQDAKEKEEDKQQLLKMLQKE-KGSTAKEEPIETVVKKAFDSNSITPGT 171
BLAST of DN617899 vs. ExPASy Swiss-Prot
Match: XRN2_CRYNE (5'-3' exoribonuclease 2 OS=Cryptococcus neoformans GN=RAT1 PE=3 SV=3) HSP 1 Score: 147.132 bits (370), Expect = 6.809e-35 Identity = 75/170 (44.12%), Postives = 100/170 (58.82%), Query Frame = 1 Query: 133 MGVPAFYRWLADRYPLSIVDVVEEDPQV----DGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTXXXXXXXXXXXXXXXXXXXXXXXXXXGKLLSAK-EKPETCDSNVITPGT 627 MGVPA +RWL+ +YP + V E+ P+ DGE V P+ PNPNG E DNLYLDMNGI+HPC HP+G+PAP + +++ IF Y + + + RPRK+L +AIDGVAPRAKMNQQR+ G +S + ++ D+N ITPGT Sbjct: 1 MGVPALFRWLSKKYPKIVERVKEDTPKKIRGPDGEIVEEPIRYENPNPNGFEVDNLYLDMNGIVHPCTHPEGRPAPETEEEMMVEIFKYTERVVNMCRPRKVLMMAIDGVAPRAKMNQQRSRRFRAAQEAADKEEERREAIKLFEAMGHAVSEETANHKSWDTNAITPGT 170
BLAST of DN617899 vs. ExPASy Swiss-Prot
Match: XRN2_SCHPO (5'-3' exoribonuclease 2 OS=Schizosaccharomyces pombe GN=dhp1 PE=1 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 3.736e-33 Identity = 73/166 (43.98%), Postives = 99/166 (59.64%), Query Frame = 1 Query: 133 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTXXXXXXXXXXXXXXXXXXXXXXXXXXGKLLSAK-EKPETCDSNVITPGT 627 MGVPA +R L+ ++ I V+E + +G D+S PNPNG+E DNLYLDMNGI+HPC HP+ +PAP + D++ ++F+Y D I +VRPR+LL++AIDGVAPRAKMNQQR+ G + K ++ DSN ITPGT Sbjct: 1 MGVPALFRLLSRKFAKVITPVIEAPTEKLPDGTEIEPDLSLPNPNGVECDNLYLDMNGIVHPCSHPEDRPAPETEDEMMVAVFEYTDRILAMVRPRQLLFIAIDGVAPRAKMNQQRSRRFRSSREAALKEEELQAFIEEAKQQGIPIDENATKKKSWDSNCITPGT 166
BLAST of DN617899 vs. ExPASy Swiss-Prot
Match: XRN2_CANAL (5'-3' exoribonuclease 2 OS=Candida albicans GN=RAT1 PE=3 SV=3) HSP 1 Score: 137.887 bits (346), Expect = 4.131e-32 Identity = 75/167 (44.91%), Postives = 97/167 (58.08%), Query Frame = 1 Query: 133 MGVPAFYRWLADRYPLSIVDVVEE-DPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTXXXXXXXXXXXXXXXXXXXXXXXXXXGKLLS-AKEKPETCDSNVITPGT 627 MGVPA +RWL+ +YP I VVEE D ++ G PNPNG E DNLYLDMNGI+HPC HP+ K P + D++F IF Y D + ++ RPRK+L +A+DGVAPRAKMNQQR G++++ A + + DSN ITPGT Sbjct: 1 MGVPALFRWLSRKYPKIISPVVEEEDHEIGG------AKYENPNPNG-EIDNLYLDMNGIVHPCSHPEHKKPPETEDEMFLDIFKYTDRVLMMARPRKVLMIAVDGVAPRAKMNQQRARRFRAAKDAELKAKQLEIEVQERELRGEIINDAIKGKKQWDSNAITPGT 160
BLAST of DN617899 vs. ExPASy Swiss-Prot
Match: XRN2_DEBHA (5'-3' exoribonuclease 2 OS=Debaryomyces hansenii GN=RAT1 PE=3 SV=4) HSP 1 Score: 137.117 bits (344), Expect = 7.046e-32 Identity = 76/166 (45.78%), Postives = 99/166 (59.64%), Query Frame = 1 Query: 133 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTXXXXXXXXXXXXXXXXXXXXXXXXXXGKLL-SAKEKPETCDSNVITPGT 627 MGVPA +RWL+ +YP I VVE+D + G A+ S PNPNG E DNLYLDMNGI+HPC HP+ K P + D++F +F Y D + L+ RPRK+L +A+DGVAPRAKMNQQR+ G+ + A + ++ DSN ITPGT Sbjct: 1 MGVPALFRWLSRKYPKIISPVVEDDVTQE-IGAAQ---FSDPNPNG-ELDNLYLDMNGIVHPCSHPEHKLPPETEDEMFLDVFKYTDRVLLMARPRKVLMIAVDGVAPRAKMNQQRSRRFRSAQDAKIAHEEKERQIRERESRGESIDDAIKGKKSWDSNAITPGT 161
BLAST of DN617899 vs. ExPASy Swiss-Prot
Match: XRN2_YARLI (5'-3' exoribonuclease 2 OS=Yarrowia lipolytica GN=RAT1 PE=3 SV=3) HSP 1 Score: 131.339 bits (329), Expect = 3.866e-30 Identity = 65/117 (55.56%), Postives = 84/117 (71.79%), Query Frame = 1 Query: 133 MGVPAFYRWLADRYPLSIVDVVEEDPQ-VDGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQR 480 MGVP YR L+ + P + DV+E++ VDGE + D S PNPNG E DNLYLDMNGI+HPC HP+G+ AP S D++ ++F Y + + + RPRK+L +AIDGVAPRAKMNQQR Sbjct: 1 MGVPGLYRHLSQKCPKIVSDVIEDETTIVDGEEIPGS-DYSAPNPNG-ELDNLYLDMNGIVHPCTHPEGEEAPPSEDEMLLAVFKYTERVLNVCRPRKVLMMAIDGVAPRAKMNQQR 115
BLAST of DN617899 vs. ExPASy Swiss-Prot
Match: XRN1_MOUSE (5'-3' exoribonuclease 1 OS=Mus musculus GN=Xrn1 PE=1 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.205e-23 Identity = 71/173 (41.04%), Postives = 90/173 (52.02%), Query Frame = 1 Query: 133 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFHP--DGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTXXXXXXXXXXXXXXXXXXXXXXXXXXGKLLSAKEKPETC------DSNVITPGT 627 MGVP FYRW+++RYP + +VV+E Q+ EFDNLYLDMNGIIH C HP D S D +F IF Y++ +F +++PRK+ ++A+DGVAPRAKMNQQR K+ A EK ET DSN ITPGT Sbjct: 1 MGVPKFYRWISERYPC-LSEVVKEH-QIP------------------EFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQR----------------GRRFRSAKEAEDKIKKAIEKGETLPTEARFDSNCITPGT 137
BLAST of DN617899 vs. ExPASy Swiss-Prot
Match: XRN1_HUMAN (5'-3' exoribonuclease 1 OS=Homo sapiens GN=XRN1 PE=1 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.205e-23 Identity = 71/173 (41.04%), Postives = 90/173 (52.02%), Query Frame = 1 Query: 133 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFHP--DGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTXXXXXXXXXXXXXXXXXXXXXXXXXXGKLLSAKEKPETC------DSNVITPGT 627 MGVP FYRW+++RYP + +VV+E Q+ EFDNLYLDMNGIIH C HP D S D +F IF Y++ +F +++PRK+ ++A+DGVAPRAKMNQQR K+ A EK ET DSN ITPGT Sbjct: 1 MGVPKFYRWISERYPC-LSEVVKEH-QIP------------------EFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQR----------------GRRFRSAKEAEDKIKKAIEKGETLPTEARFDSNCITPGT 137
BLAST of DN617899 vs. ExPASy Swiss-Prot
Match: XRN1_SCHPO (5'-3' exoribonuclease 1 OS=Schizosaccharomyces pombe GN=exo2 PE=1 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 1.739e-22 Identity = 53/119 (44.54%), Postives = 75/119 (63.03%), Query Frame = 1 Query: 133 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFHP--DGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRT 483 MG+P F+RW+++RYPL ++E D EFDNLYLDMNGI+H C H D P ++++ +IF+YI+H+F ++P+KLLY+A+DG APRAKMNQQR+ Sbjct: 1 MGIPKFFRWMSERYPLCS-QLIEND-------------------RIPEFDNLYLDMNGILHNCTHKNDDHSSPPLPEEEMYIAIFNYIEHLFEKIKPKKLLYMAVDGCAPRAKMNQQRS 99
BLAST of DN617899 vs. ExPASy Swiss-Prot
Match: XRN1_YEAST (5'-3' exoribonuclease 1 OS=Saccharomyces cerevisiae GN=KEM1 PE=1 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 4.737e-20 Identity = 62/167 (37.13%), Postives = 83/167 (49.70%), Query Frame = 1 Query: 133 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFH--PDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTXXXXXXXXXXXXXXXXXXXXXXXXXXGKLLSAKEKPETCDSNVITPGT 627 MG+P F+R++++R+P+ I+ ++E G P EFDNLYLDMN I+H C H D + ++VF I YIDH+F ++P+K+ Y+AIDGVAPRAKMNQQR K E DSN ITPGT Sbjct: 1 MGIPKFFRYISERWPM-ILQLIE--------GTQIP-----------EFDNLYLDMNSILHNCTHGNDDDVTKRLTEEEVFAKICTYIDHLFQTIKPKKIFYMAIDGVAPRAKMNQQRARRFRTAMDAEKALKKAIENGDEI----------PKGEPFDSNSITPGT 137 The following BLAST results are available for this feature:
BLAST of DN617899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 30
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >DN617899 ID=DN617899; Name=DN617899; organism=Citrus sinensis; type=EST; length=627bpback to top |