DN617897

Overview
NameDN617897
Unique NameDN617897
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length622
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9377 contig Csv1_Contig9377:153..774. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617897 vs. ExPASy Swiss-Prot
Match: MPPB_PONAB (Mitochondrial-processing peptidase subunit beta OS=Pongo abelii GN=PMPCB PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.815e-17
Identity = 45/132 (34.09%), Postives = 75/132 (56.82%), Query Frame = 2
Query:  227 KTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNN 622
            +T+++ L +G+++ASE S     ++ L++  GS YE+  + GT H LE MAF+ T+ RS L +  E+E +G ++ A  SREQ  Y   A    +P  VE+L D ++N    + E+  +   +  E+ EV  N
Sbjct:   57 ETRVTCLESGLRVASEDSGLSTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVILREMQEVETN 188          
BLAST of DN617897 vs. ExPASy Swiss-Prot
Match: MPPB_HUMAN (Mitochondrial-processing peptidase subunit beta OS=Homo sapiens GN=PMPCB PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 2.815e-17
Identity = 45/132 (34.09%), Postives = 75/132 (56.82%), Query Frame = 2
Query:  227 KTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNN 622
            +T+++ L +G+++ASE S     ++ L++  GS YE+  + GT H LE MAF+ T+ RS L +  E+E +G ++ A  SREQ  Y   A    +P  VE+L D ++N    + E+  +   +  E+ EV  N
Sbjct:   57 ETRVTCLESGLRVASEDSGLSTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVILREMQEVETN 188          
BLAST of DN617897 vs. ExPASy Swiss-Prot
Match: QCR1_BOVIN (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Bos taurus GN=UQCRC1 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 4.801e-17
Identity = 43/128 (33.59%), Postives = 77/128 (60.16%), Query Frame = 2
Query:  227 KTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISE 610
            +T++S L NG+++ASE S  P  ++ +++  GS YES  + G  + +E +AF+ T+NR    + +EVE++G ++ A ++RE   Y   AL   +P+ VELL D V+N    D ++ ++   +  E+ E
Sbjct:   47 ETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPGNALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERDVILQELQE 174          
BLAST of DN617897 vs. ExPASy Swiss-Prot
Match: QCR2_MOUSE (Cytochrome b-c1 complex subunit 2, mitochondrial OS=Mus musculus GN=Uqcrc2 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.189e-17
Identity = 42/127 (33.07%), Postives = 76/127 (59.84%), Query Frame = 2
Query:  215 VEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVK 595
            ++P   + + LPNG+ IAS  + +P++ I L+V  GS YE   + GT+HLL   +  +T+  S  +I R +EA+GG +  +A+RE M Y+ + +++ +  ++E L++    P F  WEV    +++K
Sbjct:   33 LQPQDLEFTKLPNGLVIASLENYAPLSRIGLFVKAGSRYEDSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTATRENMAYTVEGIRSDIEILMEFLLNVTTAPEFRRWEVAALRSQLK 159          
BLAST of DN617897 vs. ExPASy Swiss-Prot
Match: MPPB_ARATH (Probable mitochondrial-processing peptidase subunit beta OS=Arabidopsis thaliana GN=At3g02090 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 8.189e-17
Identity = 44/130 (33.85%), Postives = 80/130 (61.54%), Query Frame = 2
Query:  227 KTKISTLPNGVKIASETSVSP-VASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEV 613
            +T+++TLPNG+++A+E+++S   A++ +++  GS +ES  + GT H LE M F+ T  R+   +  E+E IGG++ A  SREQ  Y    L + V + +++L D ++N  F +  +N +   +  E+ EV
Sbjct:   96 ETRVTTLPNGLRVATESNLSAKTATVGVWIDAGSRFESDETNGTAHFLEHMIFKGTDRRTVRALEEEIEDIGGHLNAYTSREQTTYYAKVLDSNVNQALDVLADILQNSKFEEQRINRERDVILREMQEV 225          
BLAST of DN617897 vs. ExPASy Swiss-Prot
Match: QCR1_MOUSE (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Mus musculus GN=Uqcrc1 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.397e-16
Identity = 43/128 (33.59%), Postives = 77/128 (60.16%), Query Frame = 2
Query:  227 KTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISE 610
            +T++S L NG+++ASE S     ++ +++  GS YE+  + G  + LE +AF+ T+NR    + +EVE+IG ++ A ++RE   Y   AL   +P++VELL D V+N    D ++ ++   +  E+ E
Sbjct:   47 ETQVSILDNGLRVASEQSSHATCTVGVWIDAGSRYETEKNNGAGYFLEHLAFKGTKNRPGNALEKEVESIGAHLNAYSTREHTAYLIKALSKDLPKVVELLADIVQNSSLEDSQIEKERDVILREMQE 174          
BLAST of DN617897 vs. ExPASy Swiss-Prot
Match: MPPB_DICDI (Mitochondrial-processing peptidase subunit beta OS=Dictyostelium discoideum GN=mppB PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.824e-16
Identity = 46/126 (36.51%), Postives = 73/126 (57.94%), Query Frame = 2
Query:  227 KTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNR-SHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSE 601
            +TKI+TL NG+++A+E +   VAS+ ++V  GS+YE+  + G  H LE M F+ T  R +   I  E+E +GG++ A  SRE   Y    LK  VP  V++L D ++N  F    + ++   + SE
Sbjct:   34 ETKITTLSNGIRVATEQTYGEVASVGVWVDSGSVYETDKNNGVAHFLEHMIFKGTAKRPTPQSIETEIENMGGSLNAFTSREHSAYYMKVLKDNVPNAVDILSDILQNSKFETSLIEQERDTILSE 159          
BLAST of DN617897 vs. ExPASy Swiss-Prot
Match: QCR2_RAT (Cytochrome b-c1 complex subunit 2, mitochondrial OS=Rattus norvegicus GN=Uqcrc2 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.112e-16
Identity = 41/127 (32.28%), Postives = 76/127 (59.84%), Query Frame = 2
Query:  215 VEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVK 595
            ++P + + + LPNG+ IAS  + +P++ I L++  GS YE+    GT+HLL   +  +T+  S  +I R +EA+GG +  +A+RE M Y+ + ++  +  ++E L++    P F  WEV    +++K
Sbjct:   32 LQPQELEFTKLPNGLVIASLENYAPLSRIGLFIKAGSRYENYNYLGTSHLLRLASTLTTKGASSFKITRGIEAVGGKLSVTATRENMAYTVEGIRDDIEILMEFLLNVTTAPEFRRWEVAALRSQLK 158          
BLAST of DN617897 vs. ExPASy Swiss-Prot
Match: QCR2_BOVIN (Cytochrome b-c1 complex subunit 2, mitochondrial OS=Bos taurus GN=UQCRC2 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 5.308e-16
Identity = 41/117 (35.04%), Postives = 69/117 (58.97%), Query Frame = 2
Query:  221 PGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEV 571
            P   + + LPNG+ IAS  + +P + I L++  GS YE+  + GT+HLL   +  +T+  S  +I R +EA+GG +  +++RE M Y+ + L+  V  ++E L++    P F  WEV
Sbjct:   35 PQDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEV 151          
BLAST of DN617897 vs. ExPASy Swiss-Prot
Match: QCR1_HUMAN (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Homo sapiens GN=UQCRC1 PE=1 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 5.308e-16
Identity = 42/128 (32.81%), Postives = 77/128 (60.16%), Query Frame = 2
Query:  227 KTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISE 610
            +T++S L NG+++ASE S  P  ++ +++  GS +E+  + G  + LE +AF+ T+NR    + +EVE++G ++ A ++RE   Y   AL   +P+ VELL D V+N    D ++ ++   +  E+ E
Sbjct:   47 ETQVSLLDNGLRVASEQSSQPTCTVGVWIDVGSRFETEKNNGAGYFLEHLAFKGTKNRPGSALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLGDIVQNCSLEDSQIEKERDVILREMQE 174          
The following BLAST results are available for this feature:
BLAST of DN617897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
MPPB_PONAB2.815e-1734.09Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_HUMAN2.815e-1734.09Mitochondrial-processing peptidase subunit beta OS... [more]
QCR1_BOVIN4.801e-1733.59Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]
QCR2_MOUSE8.189e-1733.07Cytochrome b-c1 complex subunit 2, mitochondrial O... [more]
MPPB_ARATH8.189e-1733.85Probable mitochondrial-processing peptidase subuni... [more]
QCR1_MOUSE1.397e-1633.59Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]
MPPB_DICDI1.824e-1636.51Mitochondrial-processing peptidase subunit beta OS... [more]
QCR2_RAT3.112e-1632.28Cytochrome b-c1 complex subunit 2, mitochondrial O... [more]
QCR2_BOVIN5.308e-1635.04Cytochrome b-c1 complex subunit 2, mitochondrial O... [more]
QCR1_HUMAN5.308e-1632.81Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01N09_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001N09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617897 ID=DN617897; Name=DN617897; organism=Citrus sinensis; type=EST; length=622bp
CAGAAACGCAGCCTCTCGTCTTCGAGCCCTCAAGGGCCATGTGCGTTGTA
GGGTGCCTTCAGCCACAAGATTTGCAAGTTCCAGTGCCGTTGCTTCAACT
TCATCCTCTTCGGGTGGTCTCTTTAGCTGGTTGACTGGGGAACGGTCCAG
TTCTTCACCTTCTCTGGACTTTCCACTTCCGGGTGTCTCTCTTCCACCTT
CATTGCCTGATTATGTTGAACCTGGTAAAACCAAGATTTCTACTCTACCA
AATGGTGTCAAAATTGCCTCGGAAACATCAGTGAGTCCTGTAGCCTCAAT
ATCGTTATATGTTGGTTGTGGTTCAATTTATGAGTCACCAATCTCATTTG
GGACAACACACTTGCTTGAGCGTATGGCTTTTAGAAGTACAAGAAATAGG
AGTCACTTGCGTATTGTGCGAGAAGTGGAGGCAATTGGTGGCAATGTCCA
AGCCTCAGCTTCTAGGGAGCAGATGGGTTACTCCTTTGATGCTTTGAAAA
CTTATGTTCCTGAAATGGTAGAGCTTCTTATTGACTGTGTGAGAAACCCT
GTTTTTCTGGATTGGGAGGTCAACGAACAGCTCACAAAGGTGAAATCTGA
GATTAGTGAGGTTTCCAACAAT
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