DN617897

Overview
NameDN617897
Unique NameDN617897
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length622
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9377 contig Csv1_Contig9377:153..774. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617897 vs. ExPASy Swiss-Prot
Match: MPPA_YEAST (Mitochondrial-processing peptidase subunit alpha OS=Saccharomyces cerevisiae GN=MAS2 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.308e-16
Identity = 43/127 (33.86%), Postives = 73/127 (57.48%), Query Frame = 2
Query:  233 KISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEV 613
            K+S+L NG+K+A+  +    +++ LY+  GS +E     G TH+L+R+AF+ST +     +   +E +GGN Q ++SRE + Y        V +M++L+ + VR P   + E+ EQ    + EI EV
Sbjct:   20 KLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRAMAETLELLGGNYQCTSSRENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKLSAEYEIDEV 146          
BLAST of DN617897 vs. ExPASy Swiss-Prot
Match: MPPA_BLAEM (Mitochondrial-processing peptidase subunit alpha OS=Blastocladiella emersonii PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.708e-14
Identity = 38/128 (29.69%), Postives = 72/128 (56.25%), Query Frame = 2
Query:  230 TKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEV 613
            T ++ LP+G+++A+  S S  A++ +YV  G IYE+ I  G +H +  +AF+ST   +  ++++ +  +GGN+  +A+RE + Y    L   +P  V+LL D    P   + E+ E+   +  E  ++
Sbjct:   15 TCMTRLPSGIRVATAPSNSHFAAVGVYVDAGPIYETSIDRGVSHFVSSLAFKSTHGATESQVLKTMAGLGGNLFCTATRESILYQGSVLHHDLPRTVQLLADTTLRPALTEEEIAERRATIAFEAEDL 142          
BLAST of DN617897 vs. ExPASy Swiss-Prot
Match: MPPB_YEAST (Mitochondrial-processing peptidase subunit beta OS=Saccharomyces cerevisiae GN=MAS1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.224e-12
Identity = 46/132 (34.85%), Postives = 73/132 (55.30%), Query Frame = 2
Query:  221 PGKTKISTLPNGVKIASE-TSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEV 613
            PG T+ S LPNG+ IA+E    +  A++ ++V  GS  E+  + GT H LE +AF+ T+NRS   I  E+E IG ++ A  SRE   Y   +L+  +P+ V++L D +   V  +  +  +   +  E  EV
Sbjct:   24 PG-TRTSKLPNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGTQNRSQQGIELEIENIGSHLNAYTSRENTVYYAKSLQEDIPKAVDILSDILTKSVLDNSAIERERDVIIRESEEV 154          
BLAST of DN617897 vs. ExPASy Swiss-Prot
Match: MPPB_LENED (Mitochondrial-processing peptidase subunit beta OS=Lentinula edodes GN=mppB PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.560e-12
Identity = 43/129 (33.33%), Postives = 69/129 (53.49%), Query Frame = 2
Query:  230 TKISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEV 613
            T+ISTL NG+ +A+E+   +  A++ +++  GS  E+  + GT H LE MAF+ T  RS   +  EVE IG ++ A  SREQ  Y   +    VP  V+++ D ++N       +  +   +  E  EV
Sbjct:   29 TEISTLSNGLTVATESQPHAQTATVGVWIDAGSRAETDKTNGTAHFLEHMAFKGTGRRSQHALELEVENIGAHLNAYTSREQTVYYAKSFSKDVPVAVDIISDILQNSKLESGAIERERDVILREQQEV 157          
BLAST of DN617897 vs. ExPASy Swiss-Prot
Match: MPPB_NEUCR (Mitochondrial-processing peptidase subunit beta OS=Neurospora crassa GN=pep PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.650e-12
Identity = 40/130 (30.77%), Postives = 72/130 (55.38%), Query Frame = 2
Query:  227 KTKISTLPNGVKIASETS-VSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEV 613
            KT+ +TL NG+ +AS+ S  +  +++ +++  GS  E+  + GT H LE +AF+ T  R+  ++  E+E +G ++ A  SRE   Y   AL   VP+ V++L D ++N    +  +  +   +  E  EV
Sbjct:   39 KTQTTTLKNGLTVASQYSPYAQTSTVGMWIDAGSRAETDETNGTAHFLEHLAFKGTTKRTQQQLELEIENMGAHLNAYTSRENTVYFAKALNEDVPKCVDILQDILQNSKLEESAIERERDVILRESEEV 168          
BLAST of DN617897 vs. ExPASy Swiss-Prot
Match: QCR1_EUGGR (Ubiquinol-cytochrome-c reductase complex core protein I, mitochondrial OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.937e-11
Identity = 38/125 (30.40%), Postives = 64/125 (51.20%), Query Frame = 2
Query:  239 STLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEV 613
            + LPNG +IASE+      ++ +++  GS +E+  + G  H LE M F+ T  RS   I   +E +G ++ A  SRE   Y     K  VPE V++L D + N    + +++ +   +  E  +V
Sbjct:   30 NALPNGFRIASESKDGDTCTVGVWIDAGSRWETEKNNGVAHFLEHMNFKGTGKRSRQDIEFGMEKMGAHLNAYTSREHTCYYVKCFKKDVPEAVDILADILLNSKRTEQDLDAERQTIVQEKEDV 154          
BLAST of DN617897 vs. ExPASy Swiss-Prot
Match: MPPA_MOUSE (Mitochondrial-processing peptidase subunit alpha OS=Mus musculus GN=Pmpca PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.937e-11
Identity = 42/137 (30.66%), Postives = 70/137 (51.09%), Query Frame = 2
Query:  209 DYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRST-RNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVS 616
            D  E  +TK++TL NG+++AS+       ++ + +  GS YE+    G  H LE++AF ST R  S   I+  +E  GG      SR+   Y+  A    +  +V+LL D V +P   D E+      V+ E+ +++
Sbjct:   59 DGQEKFETKVTTLDNGLRVASQNKFGQFCTVGILINSGSRYEAKYLSGIAHFLEKLAFSSTARFDSKDEILLTLEKHGGICDCQTSRDTTMYAVSADSKGLDTVVDLLADVVLHPRLTDEEIEMTRMAVQFELEDLN 195          
BLAST of DN617897 vs. ExPASy Swiss-Prot
Match: MPPB_SCHPO (Probable mitochondrial-processing peptidase subunit beta OS=Schizosaccharomyces pombe GN=qcr1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.715e-11
Identity = 44/130 (33.85%), Postives = 65/130 (50.00%), Query Frame = 2
Query:  227 KTKISTLPNGVKIASETS-VSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEV 613
            KT+ +TL NG+ +A+E    +  A++ + V  GS  E+  + G  H LE +AF+ T+NRS   +  E E  G ++ A  SREQ  Y   A K  VP  V +L D + N       V  +   +  E  EV
Sbjct:   21 KTETTTLKNGLTVATEHHPYAQTATVLVGVDAGSRAETAKNNGAAHFLEHLAFKGTKNRSQKALELEFENTGAHLNAYTSREQTVYYAHAFKNAVPNAVAVLADILTNSSISASAVERERQVILREQEEV 150          
BLAST of DN617897 vs. ExPASy Swiss-Prot
Match: Y5738_STRCO (Uncharacterized zinc protease SCO5738 OS=Streptomyces coelicolor GN=SCO5738 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.770e-11
Identity = 39/129 (30.23%), Postives = 69/129 (53.49%), Query Frame = 2
Query:  224 GKTKISTLPNGVKIASETSVSP-VASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEIS 607
            G  + +TLP G++I +ET  S   A+  ++   GS  E+P   G TH LE + F+ TR RS L I   ++A+GG + A  ++E   Y    L T +P  ++++ D +   +  + +V+ +   +  EI+
Sbjct:   33 GTVRRTTLPGGLRIVTETLPSVRSATFGIWAHVGSRDETPALNGATHYLEHLLFKGTRKRSALDISSAIDAVGGEMNAFTAKEYTCYYARVLDTDLPLAIDVVCDMLTGSLIQEEDVDVERGAILEEIA 161          
BLAST of DN617897 vs. ExPASy Swiss-Prot
Match: MPPB_BLAEM (Mitochondrial-processing peptidase subunit beta OS=Blastocladiella emersonii GN=MPP1 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.770e-11
Identity = 37/130 (28.46%), Postives = 71/130 (54.62%), Query Frame = 2
Query:  227 KTKISTLPNGVKIASETSVS-PVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEV 613
            KT+++ LPNG+ +A+E++ +   A++ +++  GS  E+  + G  H LE ++F+ T+ R+   +  E+E +GG++ A  SREQ  Y        V + V +L D ++N       ++ +   +  E  EV
Sbjct:   34 KTQVTRLPNGLTVATESNPALATATVGVWIDSGSRAETKANNGVAHFLEHISFKGTKQRTQSGLEIEIENMGGHLNAYTSREQTVYYAKLFSQDVAKGVNILGDILQNSTLDPGAIDRERAVILREAEEV 163          
The following BLAST results are available for this feature:
BLAST of DN617897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
MPPA_YEAST5.308e-1633.86Mitochondrial-processing peptidase subunit alpha O... [more]
MPPA_BLAEM1.708e-1429.69Mitochondrial-processing peptidase subunit alpha O... [more]
MPPB_YEAST1.224e-1234.85Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_LENED3.560e-1233.33Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_NEUCR4.650e-1230.77Mitochondrial-processing peptidase subunit beta OS... [more]
QCR1_EUGGR3.937e-1130.40Ubiquinol-cytochrome-c reductase complex core prot... [more]
MPPA_MOUSE3.937e-1130.66Mitochondrial-processing peptidase subunit alpha O... [more]
MPPB_SCHPO6.715e-1133.85Probable mitochondrial-processing peptidase subuni... [more]
Y5738_STRCO8.770e-1130.23Uncharacterized zinc protease SCO5738 OS=Streptomy... [more]
MPPB_BLAEM8.770e-1128.46Mitochondrial-processing peptidase subunit beta OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01N09_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001N09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617897 ID=DN617897; Name=DN617897; organism=Citrus sinensis; type=EST; length=622bp
CAGAAACGCAGCCTCTCGTCTTCGAGCCCTCAAGGGCCATGTGCGTTGTA
GGGTGCCTTCAGCCACAAGATTTGCAAGTTCCAGTGCCGTTGCTTCAACT
TCATCCTCTTCGGGTGGTCTCTTTAGCTGGTTGACTGGGGAACGGTCCAG
TTCTTCACCTTCTCTGGACTTTCCACTTCCGGGTGTCTCTCTTCCACCTT
CATTGCCTGATTATGTTGAACCTGGTAAAACCAAGATTTCTACTCTACCA
AATGGTGTCAAAATTGCCTCGGAAACATCAGTGAGTCCTGTAGCCTCAAT
ATCGTTATATGTTGGTTGTGGTTCAATTTATGAGTCACCAATCTCATTTG
GGACAACACACTTGCTTGAGCGTATGGCTTTTAGAAGTACAAGAAATAGG
AGTCACTTGCGTATTGTGCGAGAAGTGGAGGCAATTGGTGGCAATGTCCA
AGCCTCAGCTTCTAGGGAGCAGATGGGTTACTCCTTTGATGCTTTGAAAA
CTTATGTTCCTGAAATGGTAGAGCTTCTTATTGACTGTGTGAGAAACCCT
GTTTTTCTGGATTGGGAGGTCAACGAACAGCTCACAAAGGTGAAATCTGA
GATTAGTGAGGTTTCCAACAAT
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