DN617897

Overview
NameDN617897
Unique NameDN617897
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length622
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9377 contig Csv1_Contig9377:153..774. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DN617897 vs. ExPASy Swiss-Prot
Match: MPPA_HUMAN (Mitochondrial-processing peptidase subunit alpha OS=Homo sapiens GN=PMPCA PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 8.770e-11
Identity = 43/137 (31.39%), Postives = 68/137 (49.64%), Query Frame = 2 
Query:  209 DYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRST-RNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVS 616
            D  E  +TK++TL NG+++AS+       ++ + +  GS YE+    G  H LE++AF ST R  S   I+  +E  GG      SR+   Y+  A    +  +V LL D V  P   D EV      V+ E+ +++
Sbjct:   60 DGQEKFETKVTTLDNGLRVASQNKFGQFCTVGILINSGSRYEAKYLSGIAHFLEKLAFSSTARFDSKDEILLTLEKHGGICDCQTSRDTTMYAVSADSKGLDTVVALLADVVLQPRLTDEEVEMTRMAVQFELEDLN 196
The following BLAST results are available for this feature:
BLAST of DN617897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
MPPA_HUMAN8.770e-1131.39Mitochondrial-processing peptidase subunit alpha O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01N09_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001N09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617897 ID=DN617897; Name=DN617897; organism=Citrus sinensis; type=EST; length=622bp
CAGAAACGCAGCCTCTCGTCTTCGAGCCCTCAAGGGCCATGTGCGTTGTA
GGGTGCCTTCAGCCACAAGATTTGCAAGTTCCAGTGCCGTTGCTTCAACT
TCATCCTCTTCGGGTGGTCTCTTTAGCTGGTTGACTGGGGAACGGTCCAG
TTCTTCACCTTCTCTGGACTTTCCACTTCCGGGTGTCTCTCTTCCACCTT
CATTGCCTGATTATGTTGAACCTGGTAAAACCAAGATTTCTACTCTACCA
AATGGTGTCAAAATTGCCTCGGAAACATCAGTGAGTCCTGTAGCCTCAAT
ATCGTTATATGTTGGTTGTGGTTCAATTTATGAGTCACCAATCTCATTTG
GGACAACACACTTGCTTGAGCGTATGGCTTTTAGAAGTACAAGAAATAGG
AGTCACTTGCGTATTGTGCGAGAAGTGGAGGCAATTGGTGGCAATGTCCA
AGCCTCAGCTTCTAGGGAGCAGATGGGTTACTCCTTTGATGCTTTGAAAA
CTTATGTTCCTGAAATGGTAGAGCTTCTTATTGACTGTGTGAGAAACCCT
GTTTTTCTGGATTGGGAGGTCAACGAACAGCTCACAAAGGTGAAATCTGA
GATTAGTGAGGTTTCCAACAAT
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