DN617896

Overview
NameDN617896
Unique NameDN617896
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length593
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617896 vs. ExPASy Swiss-Prot
Match: MPPA_MOUSE (Mitochondrial-processing peptidase subunit alpha OS=Mus musculus GN=Pmpca PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.571e-22
Identity = 56/154 (36.36%), Postives = 87/154 (56.49%), Query Frame = -3
Query:  115 GAPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYE 576
            G PGKGM+SRLY  VLN    + + +++ + Y  +G+  I  +     V + +++  +E I +     VD V+L+RAK    S ++MNLESR V+ ED+GRQVL    RK        +  V  +DI  VA K+L     +A+ GD+ ++P+YE
Sbjct:  352 GGPGKGMFSRLYLNVLNRHHWMYNATSYHHSYEDTGLLCIHASADPRQVREMVEIITKEFILMGRT--VDLVELERAKTQLMSMLMMNLESRPVIFEDVGRQVLATHSRKLPHELCTLIRNVKPEDIKRVASKMLRGKPAVAALGDLTDLPTYE 503          

HSP 2 Score: 22.3274 bits (46), Expect = 3.571e-22
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = -2
Query:  563 GSFSAGGPWK 592
            GSFSAGGP K
Sbjct:  347 GSFSAGGPGK 356          
BLAST of DN617896 vs. ExPASy Swiss-Prot
Match: MPPA_SCHPO (Probable mitochondrial-processing peptidase subunit alpha OS=Schizosaccharomyces pombe GN=mas2 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.024e-21
Identity = 58/146 (39.73%), Postives = 88/146 (60.27%), Query Frame = -3
Query:  142 GAPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTY-GERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYG 576
            G PGKGMYSRLY  VLN++P V++  AF++ Y  SG+FG+  T   D    A  L  REL +  T   V   + +RAK   KS++LMNLESRM+  ED+GRQ+ T  G     +  ++ ++ +T  D++ VA+++L+  ++    G
Sbjct:  322 GGPGKGMYSRLYLNVLNQYPWVETCMAFNHSYTDSGLFGMFVTILDDAAHLAAPLIIRELCN--TVLSVTSEETERAKNQLKSSLLMNLESRMISLEDLGRQIQTQNGLYITPKEMIEKIDALTPSDLSRVARRVLTGNVSNPGNG 465          

HSP 2 Score: 22.3274 bits (46), Expect = 1.024e-21
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = -2
Query:  563 GSFSAGGPWK 592
            GSFSAGGP K
Sbjct:  317 GSFSAGGPGK 326          
BLAST of DN617896 vs. ExPASy Swiss-Prot
Match: MPPA1_DICDI (Mitochondrial-processing peptidase subunit alpha-1 OS=Dictyostelium discoideum GN=mppA1 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.093e-19
Identity = 55/143 (38.46%), Postives = 82/143 (57.34%), Query Frame = -3
Query:  148 GAPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMAS 576
            G PGKGM SRL   V+    +V++  AF  ++N   +FGI  TT S F+   I+L  +EL+ + +   + Q +L+RAK+S KS IL NLE R V  +D+ R +L++G  K  E   K ++ VT  DI  +  KL  S  ++ S
Sbjct:  486 GGPGKGMQSRLNLNVVYSSHRVKNCHAFLFVFNKVSLFGISLTTQSGFLQDGIELVLQELLMLRS--SMTQQELERAKRSQKSQILQNLEMRSVQCDDMARHILSFGSYKSPEQICKLIDSVTLDDIKKLISKLAQSNPSVVS 626          
BLAST of DN617896 vs. ExPASy Swiss-Prot
Match: MPPA2_DICDI (Mitochondrial-processing peptidase subunit alpha-2 OS=Dictyostelium discoideum GN=mppA2 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.027e-14
Identity = 53/154 (34.42%), Postives = 79/154 (51.30%), Query Frame = -3
Query:  115 APGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVA-TPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYE 573
            APG G  SRL+    N    V S  AF+  Y  SG+FG+        V K + L   E+++ + T G+    +L+RAK  TKS++L   ESR    E IG+Q +   +      F + +  VT++DI  VA+K+ S   T+   GDV + P+ E
Sbjct:  289 APGHGRTSRLFSLTKNNSNIVNS-EAFNLTYGDSGLFGVVAEVEGATVGKTVSLITSEIVAASKTAGQ----ELERAKAVTKSSVLEQAESRTSALEFIGKQAIYTDKVLTPAEFAEEISKVTSEDIKRVAKKMTSKKPTLVVVGDVSDAPTIE 437          
BLAST of DN617896 vs. ExPASy Swiss-Prot
Match: MPPB_ARATH (Probable mitochondrial-processing peptidase subunit beta OS=Arabidopsis thaliana GN=At3g02090 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.478e-12
Identity = 45/155 (29.03%), Postives = 79/155 (50.97%), Query Frame = -3
Query:  109 GKGMYSRLYRRV-LNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQK-LLSSPLTMASYGDVINVPSYE*F 567
            GK + S L +RV +NE    +S  AF+  Y  +G+FG+     +D +         E+  +A    V    + RA+   KS++L++++    ++EDIGRQ+LTYG R P       ++ V A  +  VA K +    + +++ G + ++P Y  F
Sbjct:  372 GKHVGSDLTQRVAINEI--AESIMAFNTNYKDTGLFGVYAVAKADCLDDLSYAIMYEVTKLAY--RVSDADVTRARNQLKSSLLLHMDGTSPIAEDIGRQLLTYGRRIPTAELFARIDAVDASTVKRVANKYIYDKDIAISAIGPIQDLPDYNKF 522          
BLAST of DN617896 vs. ExPASy Swiss-Prot
Match: MPPB_YEAST (Mitochondrial-processing peptidase subunit beta OS=Saccharomyces cerevisiae GN=MAS1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.740e-11
Identity = 41/133 (30.83%), Postives = 73/133 (54.89%), Query Frame = -3
Query:  121 SFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISV---ATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQ-KLLSSPLTMASYGDVINVPS 507
            S+ +FS  Y  SG++G+   T S+     + L   E++        G++   +++RAK   K+A+L++L+    + EDIGRQV+T G+R   E   + V+ +T  DI   A  +L + P++M + G+   VP+
Sbjct:  322 SYMSFSTSYADSGLWGMYIVTDSN--EHNVQLIVNEILKEWKRIKSGKISDAEVNRAKAQLKAALLLSLDGSTAIVEDIGRQVVTTGKRLSPEEVFEQVDKITKDDIIMWANYRLQNKPVSMVALGNTSTVPN 452          
BLAST of DN617896 vs. ExPASy Swiss-Prot
Match: MPPB_NEUCR (Mitochondrial-processing peptidase subunit beta OS=Neurospora crassa GN=pep PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.104e-11
Identity = 39/132 (29.55%), Postives = 73/132 (55.30%), Query Frame = -3
Query:  118 SFSAFSNIYNHSGMFGIQGTTGS-DFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVA-QKLLSSPLTMASYGDVINVPSY 507
            SF +FS  Y+ +G++GI   T   D V   +  + RE   + +   V + +++RAK   K++IL++L+    V+EDIGRQ++T G R       + ++ V+AKD+   A +K+    + +++ G +  +  Y
Sbjct:  335 SFMSFSTSYSDTGLWGIYLVTDKLDRVDDLVHFSLREWTRLCS--NVSEAEVERAKAQLKASILLSLDGTTAVAEDIGRQIVTTGRRMSPAEIERIIDAVSAKDVMDFANKKIWDQDIAISAVGSIEGLFDY 464          
BLAST of DN617896 vs. ExPASy Swiss-Prot
Match: QCR2_HUMAN (Cytochrome b-c1 complex subunit 2, mitochondrial OS=Homo sapiens GN=UQCRC2 PE=1 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 7.972e-11
Identity = 44/152 (28.95%), Postives = 69/152 (45.39%), Query Frame = -3
Query:  124 GKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGI----QGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVP 567
            G    S L++ V     Q    SAF+  Y+ SG+FGI    Q T   D +      AA   +     G +    +  AK   K+  LM++ES     E++G Q L  G   P    L+ ++ V   DI + A+K +S   +MA+ G++ + P
Sbjct:  302 GSNTTSHLHQAVAKATQQPFDVSAFNASYSDSGLFGIYTISQATAAGDVIK-----AAYNQVKTIAQGNLSNTDVQAAKNKLKAGYLMSVESSECFLEEVGSQALVAGSYMPPSTVLQQIDSVANADIINAAKKFVSGQKSMAASGNLGHTP 448          
The following BLAST results are available for this feature:
BLAST of DN617896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
MPPA_MOUSE3.571e-2236.36Mitochondrial-processing peptidase subunit alpha O... [more]
MPPA_SCHPO1.024e-2139.73Probable mitochondrial-processing peptidase subuni... [more]
MPPA1_DICDI2.093e-1938.46Mitochondrial-processing peptidase subunit alpha-1... [more]
MPPA2_DICDI2.027e-1434.42Mitochondrial-processing peptidase subunit alpha-2... [more]
MPPB_ARATH2.478e-1229.03Probable mitochondrial-processing peptidase subuni... [more]
MPPB_YEAST2.740e-1130.83Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_NEUCR6.104e-1129.55Mitochondrial-processing peptidase subunit beta OS... [more]
QCR2_HUMAN7.972e-1128.95Cytochrome b-c1 complex subunit 2, mitochondrial O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01N09_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001N09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617896 ID=DN617896; Name=DN617896; organism=Citrus sinensis; type=EST; length=593bp
GGATAATTTCTAGGAACAAACTACAAAAGAATATGAGAAATATTTCTAGG
AGGCAATTAAGTTTGTCAATACAGCATCATATTTAAAACTGCTGCTTGCT
TAAAACCCAAATTATTCATAGCTTGGGACATTGATGACATCTCCATATGA
TGCCATTGTGAGAGGAGATGAAAGAAGCTTCTGTGCTACGGAAGCAATAT
CCTTTGCTGTAACTCCTTCCACAGTCTTCAAGAAATGCTCCACGGGTTTC
CTCTCACCATATGTCAGAACTTGTCTACCTATGTCTTCGGAAACAACCAT
TCTTGATTCCAAATTCATCAAAATAGCTGACTTGGTTGACTGTTTGGCGC
GGTCTAGCTGTACTTGATCAACTTCTCCTGGAGTTGCCACAGAAATAAGC
TCCCTCGCTGCTAAATCAATAGCTTTTGATACGAAATCAGAGCCAGTTGT
ACCCTGGATTCCAAACATGCCAGAATGATTGTAGATGTTGCTGAATGCTG
AAAAGGACTGAACTTGCGGGAACTCATTCAAAACACGACGATACAGCCTT
GAGTACATTCCTTTTCCAGGGGCCCCCAGCTGAGAATGATCCA
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