DN617894

Overview
NameDN617894
Unique NameDN617894
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length316
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11542 contig Csv1_Contig11542:156..471. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617894 vs. ExPASy Swiss-Prot
Match: HS90B_MOUSE (Heat shock protein HSP 90-beta OS=Mus musculus GN=Hsp90ab1 PE=1 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 5.999e-37
Identity = 76/101 (75.25%), Postives = 90/101 (89.11%), Query Frame = 2
Query:   14 VLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 316
            ++SLIINTFYSNKEIFLRELISN+SDALDKIR+ESLTD SKLD+  EL I I+P+    TL+++D+GIGMTKADL+NNLGTIA+SGTK FMEAL AGAD+S
Sbjct:   24 LMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDILPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADIS 124          
BLAST of DN617894 vs. ExPASy Swiss-Prot
Match: HSP83_TRYBB (Heat shock protein 83 OS=Trypanosoma brucei brucei GN=HSP83 PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.746e-36
Identity = 76/101 (75.25%), Postives = 88/101 (87.13%), Query Frame = 2
Query:   14 VLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 316
            ++SLIINTFYSNKEIFLRELISNSSDA DKIR++SLT++S L  +P L I +IPD+ N TL++ DSGIGMTKADLVNNLGTIARSGTK FMEAL AG D+S
Sbjct:   14 LMSLIINTFYSNKEIFLRELISNSSDACDKIRYQSLTNQSVLGDEPHLRIRVIPDRVNKTLTVEDSGIGMTKADLVNNLGTIARSGTKSFMEALEAGGDMS 114          
BLAST of DN617894 vs. ExPASy Swiss-Prot
Match: HS90B_CHICK (Heat shock cognate protein HSP 90-beta OS=Gallus gallus GN=HSP90AB1 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.746e-36
Identity = 76/101 (75.25%), Postives = 90/101 (89.11%), Query Frame = 2
Query:   14 VLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 316
            ++SLIINTFYSNKEIFLRELISN+SDALDKIR+ESLTD SKLD   +L I I+P+  + TL+++D+GIGMTKADLVNNLGTIA+SGTK FMEAL AGAD+S
Sbjct:   24 LMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDTGKDLKIDIVPNPRDPTLTLLDTGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADIS 124          
BLAST of DN617894 vs. ExPASy Swiss-Prot
Match: HSP90_CAEEL (Heat shock protein 90 OS=Caenorhabditis elegans GN=daf-21 PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.280e-36
Identity = 75/101 (74.26%), Postives = 90/101 (89.11%), Query Frame = 2
Query:   14 VLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 316
            ++SLIINTFYSNKEI+LRELISN+SDALDKIR+++LT+ S+LD   ELFI I P+K   TL+I+D+GIGMTKADLVNNLGTIA+SGTK FMEAL AGAD+S
Sbjct:   17 LMSLIINTFYSNKEIYLRELISNASDALDKIRYQALTEPSELDTGKELFIKITPNKEEKTLTIMDTGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADIS 117          
BLAST of DN617894 vs. ExPASy Swiss-Prot
Match: HSP90_CAEBR (Heat shock protein 90 OS=Caenorhabditis briggsae GN=daf-21 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.280e-36
Identity = 75/101 (74.26%), Postives = 90/101 (89.11%), Query Frame = 2
Query:   14 VLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 316
            ++SLIINTFYSNKEI+LRELISN+SDALDKIR+++LT+ S+LD   ELFI I P+K   TL+I+D+GIGMTKADLVNNLGTIA+SGTK FMEAL AGAD+S
Sbjct:   17 LMSLIINTFYSNKEIYLRELISNASDALDKIRYQALTEPSELDTGKELFIKITPNKEEKTLTIMDTGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADIS 117          
BLAST of DN617894 vs. ExPASy Swiss-Prot
Match: HSP82_AJECA (Heat shock protein 82 OS=Ajellomyces capsulata GN=HSP82 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.280e-36
Identity = 77/103 (74.76%), Postives = 90/103 (87.38%), Query Frame = 2
Query:    8 TSVLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 316
            + +LSLIINT YSNKEIFLRELISN SDALDKIR+++L+D SKL++  +L I I PDK N TL+I D+GIGMTKADLVNNLGTIARSGTK+FMEAL AGAD+S
Sbjct:   13 SQLLSLIINTVYSNKEIFLRELISNFSDALDKIRYKALSDPSKLESDKDLRIDITPDKENKTLTIRDTGIGMTKADLVNNLGTIARSGTKQFMEALTAGADIS 115          
BLAST of DN617894 vs. ExPASy Swiss-Prot
Match: HS90B_DANRE (Heat shock protein HSP 90-beta OS=Danio rerio GN=hsp90ab1 PE=2 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 2.280e-36
Identity = 75/101 (74.26%), Postives = 90/101 (89.11%), Query Frame = 2
Query:   14 VLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 316
            ++SLIINTFYSNKEIFLREL+SN+SDALDKIR+ESLTD +KLD+  +L I IIP+    TL++ID+GIGMTKADL+NNLGTIA+SGTK FMEAL AGAD+S
Sbjct:   23 LMSLIINTFYSNKEIFLRELVSNASDALDKIRYESLTDPTKLDSGKDLKIDIIPNVQERTLTLIDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADIS 123          
BLAST of DN617894 vs. ExPASy Swiss-Prot
Match: HSP90_BRUPA (Heat shock protein 90 OS=Brugia pahangi GN=HSP90 PE=2 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 3.889e-36
Identity = 74/101 (73.27%), Postives = 91/101 (90.10%), Query Frame = 2
Query:   14 VLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 316
            ++SLIINTFYSNKEIFLRELISNSSDALDKIR+++LT+ ++L+   EL+I I P+K + TL+I+D+GIGMTKADLVNNLGTIA+SGTK FMEAL AGAD+S
Sbjct:   19 LMSLIINTFYSNKEIFLRELISNSSDALDKIRYQALTEPAELETGKELYIKITPNKADKTLTIMDTGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADIS 119          
BLAST of DN617894 vs. ExPASy Swiss-Prot
Match: HSP83_LEIIN (Heat shock protein 83-1 OS=Leishmania infantum GN=HSP83-1 PE=3 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 3.889e-36
Identity = 75/101 (74.26%), Postives = 86/101 (85.15%), Query Frame = 2
Query:   14 VLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 316
            ++SLIINTFYSNKEIFLRELISN+SDA DKIR++SLTD S L   P L I ++PDK N TL++ D+GIGMTKADLVNNLGTIARSGTK FMEAL AG D+S
Sbjct:   14 LMSLIINTFYSNKEIFLRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVPDKENKTLTVEDNGIGMTKADLVNNLGTIARSGTKAFMEALEAGGDMS 114          
BLAST of DN617894 vs. ExPASy Swiss-Prot
Match: HSP90_SCHPO (Heat shock protein 90 homolog OS=Schizosaccharomyces pombe GN=swo1 PE=1 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 2.521e-35
Identity = 73/103 (70.87%), Postives = 88/103 (85.44%), Query Frame = 2
Query:    8 TSVLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 316
            + ++SLIINT YSNKEIFLRELISN+SDALDKIR++SL+D   LDA+ +LFI I PDK N  LSI D+GIGMTK DL+NNLG IA+SGTK+FMEA A+GAD+S
Sbjct:   14 SQLMSLIINTVYSNKEIFLRELISNASDALDKIRYQSLSDPHALDAEKDLFIRITPDKENKILSIRDTGIGMTKNDLINNLGVIAKSGTKQFMEAAASGADIS 116          
The following BLAST results are available for this feature:
BLAST of DN617894 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
HS90B_MOUSE5.999e-3775.25Heat shock protein HSP 90-beta OS=Mus musculus GN=... [more]
HSP83_TRYBB1.746e-3675.25Heat shock protein 83 OS=Trypanosoma brucei brucei... [more]
HS90B_CHICK1.746e-3675.25Heat shock cognate protein HSP 90-beta OS=Gallus g... [more]
HSP90_CAEEL2.280e-3674.26Heat shock protein 90 OS=Caenorhabditis elegans GN... [more]
HSP90_CAEBR2.280e-3674.26Heat shock protein 90 OS=Caenorhabditis briggsae G... [more]
HSP82_AJECA2.280e-3674.76Heat shock protein 82 OS=Ajellomyces capsulata GN=... [more]
HS90B_DANRE2.280e-3674.26Heat shock protein HSP 90-beta OS=Danio rerio GN=h... [more]
HSP90_BRUPA3.889e-3673.27Heat shock protein 90 OS=Brugia pahangi GN=HSP90 P... [more]
HSP83_LEIIN3.889e-3674.26Heat shock protein 83-1 OS=Leishmania infantum GN=... [more]
HSP90_SCHPO2.521e-3570.87Heat shock protein 90 homolog OS=Schizosaccharomyc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01N08_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001N08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617894 ID=DN617894; Name=DN617894; organism=Citrus sinensis; type=EST; length=316bp
GAGATCAACCAGTGTGTTGAGTTTGATCATCAACACCTTTTACAGCAACA
AGGAGATCTTTCTTCGTGAGCTCATCAGCAACTCCTCCGATGCATTGGAT
AAGATCAGATTTGAAAGCTTGACAGACAAGAGCAAGCTAGATGCCCAACC
AGAGCTTTTCATCCACATTATCCCTGATAAGACCAACAACACTTTGTCTA
TTATTGACAGTGGTATTGGCATGACTAAGGCTGATTTGGTGAACAACCTT
GGTACAATTGCTAGGTCTGGGACCAAAGAGTTCATGGAGGCATTGGCTGC
TGGGGCGGATGTGAGC
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