DN617894

Overview
NameDN617894
Unique NameDN617894
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length316
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11542 contig Csv1_Contig11542:156..471. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617894 vs. ExPASy Swiss-Prot
Match: H90B4_HUMAN (Putative heat shock protein HSP 90-beta 4 OS=Homo sapiens GN=HSP90AB4P PE=5 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.691e-31
Identity = 68/100 (68.00%), Postives = 84/100 (84.00%), Query Frame = 2
Query:   17 LSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 316
            +SLIINTFYSNKEIFL+ELISN+SDALDKIR+ESLTD SKLD   EL I IIP+     L+++++GIGMTKADL+NNLG IA+SGT+ FMEA  + A++S
Sbjct:    1 MSLIINTFYSNKEIFLQELISNASDALDKIRYESLTDPSKLDGGKELKIDIIPNPRECILTLVNTGIGMTKADLINNLGAIAKSGTEAFMEAFQSCAEIS 100          
BLAST of DN617894 vs. ExPASy Swiss-Prot
Match: H90B2_HUMAN (Putative heat shock protein HSP 90-beta 2 OS=Homo sapiens GN=HSP90AB2P PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 1.750e-28
Identity = 64/95 (67.37%), Postives = 80/95 (84.21%), Query Frame = 2
Query:   14 VLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIAR-SGTKEFMEAL 295
            ++SLIINTFYSNKEIFL ELISN+SDALDKIR+ESLTD SKLD+  EL I IIP+   +TL+++D+GIGMTKADL+NNLGTIA+     E++E +
Sbjct:   24 LMSLIINTFYSNKEIFLWELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNTQEHTLTLVDTGIGMTKADLINNLGTIAKFQDQTEYLEEM 118          
BLAST of DN617894 vs. ExPASy Swiss-Prot
Match: HTPG_MYXXD (Chaperone protein htpG OS=Myxococcus xanthus (strain DK 1622) GN=htpG PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.223e-26
Identity = 56/95 (58.95%), Postives = 77/95 (81.05%), Query Frame = 2
Query:   14 VLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 298
            +LSL+IN+ YS+KEIFLREL+SN+SDALDK+RF ++T+   L  +P L + +IPD+   TL+I D+GIGM+  +LV NLGTIA SG++EF+EALA
Sbjct:   21 LLSLVINSLYSHKEIFLRELVSNASDALDKLRFRAITEPELLADEPALELRLIPDEAKGTLTIEDTGIGMSHDELVKNLGTIAHSGSREFIEALA 115          
BLAST of DN617894 vs. ExPASy Swiss-Prot
Match: HTPG_NITEU (Chaperone protein htpG OS=Nitrosomonas europaea GN=htpG PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.365e-25
Identity = 53/97 (54.64%), Postives = 78/97 (80.41%), Query Frame = 2
Query:    5 STSVLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 295
            +  +L L+I++ YSNKEIFLRELISN+SDA DK+RFE L+D +  ++ P+L I I  DK   T++IID+GIGM++ +++NN+GTIA+SGT+EF ++L
Sbjct:   16 ANQLLKLMIHSLYSNKEIFLRELISNASDAADKLRFEGLSDAALYESDPDLKIRIAYDKEARTITIIDNGIGMSRQEVINNIGTIAKSGTREFFDSL 112          
BLAST of DN617894 vs. ExPASy Swiss-Prot
Match: HTPG_EHRRW (Chaperone protein htpG OS=Ehrlichia ruminantium (strain Welgevonden) GN=htpG PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.365e-25
Identity = 56/98 (57.14%), Postives = 78/98 (79.59%), Query Frame = 2
Query:   14 VLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGA 307
            VL L+I++ Y+NK+IFLRELISN+SDA DK+R++SL+++  +DA  EL I I  DK  N L I D+GIGM + DL+NNLGTIA SGT++F++A+ +GA
Sbjct:   19 VLKLVIHSLYTNKDIFLRELISNASDACDKLRYQSLSNQDLMDAGSELKIVISVDKDKNRLYISDNGIGMNREDLINNLGTIAHSGTQKFLDAINSGA 116          
BLAST of DN617894 vs. ExPASy Swiss-Prot
Match: HTPG_EHRRG (Chaperone protein htpG OS=Ehrlichia ruminantium (strain Gardel) GN=htpG PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.365e-25
Identity = 56/98 (57.14%), Postives = 78/98 (79.59%), Query Frame = 2
Query:   14 VLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGA 307
            VL L+I++ Y+NK+IFLRELISN+SDA DK+R++SL+++  +DA  EL I I  DK  N L I D+GIGM + DL+NNLGTIA SGT++F++A+ +GA
Sbjct:   19 VLKLVIHSLYTNKDIFLRELISNASDACDKLRYQSLSNQDLMDAGSELKIVISVDKDKNRLYISDNGIGMNREDLINNLGTIAHSGTQKFLDAINSGA 116          
BLAST of DN617894 vs. ExPASy Swiss-Prot
Match: HTPG_PELPD (Chaperone protein htpG OS=Pelobacter propionicus (strain DSM 2379) GN=htpG PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.033e-25
Identity = 55/94 (58.51%), Postives = 76/94 (80.85%), Query Frame = 2
Query:   14 VLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 295
            +L L+I++ YSN++IFLRELISNSSDA+DKIRFE+ +++  L+   +  I +IPDK   TL+I+D+GIGMT A++  N+GTIARSGTK FM+AL
Sbjct:   15 LLDLVIHSLYSNRDIFLRELISNSSDAIDKIRFEAHSNEELLEGNSDWKIKLIPDKDAGTLTILDNGIGMTMAEVEENIGTIARSGTKAFMQAL 108          
BLAST of DN617894 vs. ExPASy Swiss-Prot
Match: ENPL_DICDI (Endoplasmin homolog OS=Dictyostelium discoideum GN=grp94 PE=2 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 6.880e-25
Identity = 61/103 (59.22%), Postives = 77/103 (74.76%), Query Frame = 2
Query:   14 VLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDA--QPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 316
            ++++IIN+ YS KEIFLRELISN+SDALDKIRF +LT+   L    Q  L IHI  DK NN L I D G+GMTK +LV NLGTIA+SGTKEF++ ++  A+ S
Sbjct:   61 LMNIIINSLYSKKEIFLRELISNASDALDKIRFLALTNADLLGEGEQSNLDIHIKIDKANNVLHITDRGVGMTKDELVRNLGTIAQSGTKEFIKKVSDSAESS 163          
BLAST of DN617894 vs. ExPASy Swiss-Prot
Match: ENPL_CHICK (Endoplasmin OS=Gallus gallus GN=HSP90B1 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 8.986e-25
Identity = 58/101 (57.43%), Postives = 72/101 (71.29%), Query Frame = 2
Query:   14 VLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 316
            ++ LIIN+ Y NKEIFLRELISN+SDALDKIR  SLTD++ L    EL + I  DK  N L + D+GIGMTK +L+ NLGTIA+SGT EF+  +    D S
Sbjct:   84 MMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNMLHVTDTGIGMTKEELIKNLGTIAKSGTSEFLNKMTEMQDDS 184          
BLAST of DN617894 vs. ExPASy Swiss-Prot
Match: ENPL_PIG (Endoplasmin OS=Sus scrofa GN=HSP90B1 PE=2 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 1.174e-24
Identity = 56/95 (58.95%), Postives = 71/95 (74.74%), Query Frame = 2
Query:   14 VLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 298
            ++ LIIN+ Y NKEIFLRELISN+SDALDKIR  SLTD++ L    EL + I  DK  N L + D+G+GMT+ +LV NLGTIA+SGT EF+  +A
Sbjct:   85 MMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMA 179          
The following BLAST results are available for this feature:
BLAST of DN617894 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
H90B4_HUMAN1.691e-3168.00Putative heat shock protein HSP 90-beta 4 OS=Homo ... [more]
H90B2_HUMAN1.750e-2867.37Putative heat shock protein HSP 90-beta 2 OS=Homo ... [more]
HTPG_MYXXD6.223e-2658.95Chaperone protein htpG OS=Myxococcus xanthus (stra... [more]
HTPG_NITEU2.365e-2554.64Chaperone protein htpG OS=Nitrosomonas europaea GN... [more]
HTPG_EHRRW2.365e-2557.14Chaperone protein htpG OS=Ehrlichia ruminantium (s... [more]
HTPG_EHRRG2.365e-2557.14Chaperone protein htpG OS=Ehrlichia ruminantium (s... [more]
HTPG_PELPD4.033e-2558.51Chaperone protein htpG OS=Pelobacter propionicus (... [more]
ENPL_DICDI6.880e-2559.22Endoplasmin homolog OS=Dictyostelium discoideum GN... [more]
ENPL_CHICK8.986e-2557.43Endoplasmin OS=Gallus gallus GN=HSP90B1 PE=1 SV=1[more]
ENPL_PIG1.174e-2458.95Endoplasmin OS=Sus scrofa GN=HSP90B1 PE=2 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01N08_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001N08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617894 ID=DN617894; Name=DN617894; organism=Citrus sinensis; type=EST; length=316bp
GAGATCAACCAGTGTGTTGAGTTTGATCATCAACACCTTTTACAGCAACA
AGGAGATCTTTCTTCGTGAGCTCATCAGCAACTCCTCCGATGCATTGGAT
AAGATCAGATTTGAAAGCTTGACAGACAAGAGCAAGCTAGATGCCCAACC
AGAGCTTTTCATCCACATTATCCCTGATAAGACCAACAACACTTTGTCTA
TTATTGACAGTGGTATTGGCATGACTAAGGCTGATTTGGTGAACAACCTT
GGTACAATTGCTAGGTCTGGGACCAAAGAGTTCATGGAGGCATTGGCTGC
TGGGGCGGATGTGAGC
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