DN617894

Overview
NameDN617894
Unique NameDN617894
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length316
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11542 contig Csv1_Contig11542:156..471. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617894 vs. ExPASy Swiss-Prot
Match: ENPL_CATRO (Endoplasmin homolog OS=Catharanthus roseus GN=HSP90 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.695e-23
Identity = 59/103 (57.28%), Postives = 73/103 (70.87%), Query Frame = 2
Query:   14 VLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDA--QPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 316
            ++ +IIN+ YSNK+IFLRELISN+SDALDKIRF +LTDK  L      +L I I  DK    LSI D GIGMTK DL+ NLGTIA+SGT  F+E +    D++
Sbjct:   89 LMDIIINSLYSNKDIFLRELISNASDALDKIRFLALTDKEILGEGDTAKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLN 191          
BLAST of DN617894 vs. ExPASy Swiss-Prot
Match: HTPG_THICR (Chaperone protein htpG OS=Thiomicrospira crunogena (strain XCL-2) GN=htpG PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.213e-23
Identity = 52/92 (56.52%), Postives = 74/92 (80.43%), Query Frame = 2
Query:   14 VLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFME 289
            +L L+I+  YSNKEIFLREL+SN+SDALDK+RFES+++ +  + + EL I +  DK   T+SIID+GIGMT+ +++ N+GTIA SGTK+F+E
Sbjct:   16 LLKLMIHALYSNKEIFLRELVSNASDALDKLRFESVSNDALSEGESELAIQVGFDKEARTVSIIDNGIGMTRDEVIANIGTIANSGTKKFLE 107          
BLAST of DN617894 vs. ExPASy Swiss-Prot
Match: HTPG_NITMU (Chaperone protein htpG OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=htpG PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.931e-23
Identity = 49/94 (52.13%), Postives = 76/94 (80.85%), Query Frame = 2
Query:   14 VLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 295
            +L L+I++ YSNKEIFLRELISN+SDA DK+RFE+LTD +  ++  +L I +  DK   T+++ D+GIGM++ ++++++GTIA+SGT+EF +AL
Sbjct:   19 LLKLMIHSLYSNKEIFLRELISNASDAADKLRFEALTDGALYESDSDLKIRVSYDKEARTITVADNGIGMSRQEVIDHIGTIAKSGTREFFDAL 112          
BLAST of DN617894 vs. ExPASy Swiss-Prot
Match: HTPG_BUCAI (Chaperone protein htpG OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=htpG PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.931e-23
Identity = 53/94 (56.38%), Postives = 71/94 (75.53%), Query Frame = 2
Query:   14 VLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 295
            +L L+I++ YSNKEIFLRELISNSSDA+DK+RFES++     +   ++ I I  +K   TL I D+GIGMTK D + NLGTIA+SGTK F+++L
Sbjct:   18 LLHLMIHSLYSNKEIFLRELISNSSDAIDKLRFESISSPELYENDSDVKIQISINKAQRTLIISDNGIGMTKEDTIENLGTIAKSGTKSFLQSL 111          
BLAST of DN617894 vs. ExPASy Swiss-Prot
Match: HTPG_WOLPM (Chaperone protein htpG OS=Wolbachia pipientis wMel GN=htpG PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.440e-23
Identity = 53/101 (52.48%), Postives = 75/101 (74.26%), Query Frame = 2
Query:   14 VLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 316
            VL+++I++ Y+NK+IFLRELISN+SDA DK+R+ES  + + LD   EL I I  +K  N L I D+GIGM + DL++NLGTIA SGT++F++A+    D S
Sbjct:   23 VLNIVIHSLYTNKDIFLRELISNASDACDKLRYESQLNPNLLDLSDELKITISSNKDKNELYITDNGIGMNRQDLIDNLGTIASSGTQKFLDAIKNSKDSS 123          
BLAST of DN617894 vs. ExPASy Swiss-Prot
Match: HTPG_VESOH (Chaperone protein htpG OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=htpG PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.440e-23
Identity = 50/96 (52.08%), Postives = 78/96 (81.25%), Query Frame = 2
Query:    8 TSVLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 295
            + +L L+I++ YSNKEIFLRELISN+SDA+DK++F+SL+D + ++ +  L IHI  +K  NT++I D+GIGM++ ++  N+GTIA SGTK+F+++L
Sbjct:   14 SQLLHLMIHSLYSNKEIFLRELISNASDAVDKLKFKSLSDDTLIEGKEALQIHIDVNKDANTITITDNGIGMSEVEVNKNIGTIANSGTKKFLKSL 109          
BLAST of DN617894 vs. ExPASy Swiss-Prot
Match: HTPG_IDILO (Chaperone protein htpG OS=Idiomarina loihiensis GN=htpG PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.440e-23
Identity = 50/95 (52.63%), Postives = 73/95 (76.84%), Query Frame = 2
Query:   14 VLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 298
            +L L+I++ YSNKEIFLREL+SN+SDA DK+RF++L+D S      +L + +  DK + T++I D+G+GMT+ D++NNLGTIA+SGT EF   L+
Sbjct:   19 LLHLMIHSLYSNKEIFLRELVSNASDAADKLRFKALSDNSLYGDDSDLHVRVSVDKDSRTITISDNGVGMTRDDVMNNLGTIAKSGTAEFFGQLS 113          
BLAST of DN617894 vs. ExPASy Swiss-Prot
Match: HTPG_BAUCH (Chaperone protein htpG OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=htpG PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.440e-23
Identity = 50/94 (53.19%), Postives = 73/94 (77.66%), Query Frame = 2
Query:   14 VLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 295
            +L+L+I++ YSNKEIFLRELISN+SDA DK+RF +L      +   EL++ II +K   T++IID+GIGM + ++++NLGTIA+SGTK F+E +
Sbjct:   18 LLNLMIHSLYSNKEIFLRELISNASDAADKLRFLALAKPDLYEGNGELYVRIICNKEKRTITIIDNGIGMCRTEVIDNLGTIAKSGTKAFLETI 111          
BLAST of DN617894 vs. ExPASy Swiss-Prot
Match: HTPG_WOLTR (Chaperone protein htpG OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=htpG PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.410e-23
Identity = 51/101 (50.50%), Postives = 76/101 (75.25%), Query Frame = 2
Query:   14 VLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 316
            VL+++I++ Y+NK+IFLREL+SN+SDA DK+R+ES  + + LD+  EL I I  +K  N L + D+GIGM++ DL+ NLGTIA SGT++F++A+    D S
Sbjct:   24 VLNIVIHSLYTNKDIFLRELVSNASDACDKLRYESQLNPNLLDSSGELKITISSNKDENELYVTDNGIGMSRQDLIGNLGTIASSGTQKFLDAIKNSKDSS 124          
BLAST of DN617894 vs. ExPASy Swiss-Prot
Match: HTPG_RALEH (Chaperone protein htpG OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=htpG PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.410e-23
Identity = 52/95 (54.74%), Postives = 73/95 (76.84%), Query Frame = 2
Query:   14 VLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 298
            +L L+I++ YSNKEIFLREL+SN+SDA DK+RFE++ + S L+   +L I I  D    TL+I D+GIGM++ + ++NLGTIARSGTKEF + L+
Sbjct:   17 LLHLMIHSLYSNKEIFLRELVSNASDATDKLRFEAIANPSLLENDADLAIRIEADAKARTLTITDNGIGMSRDEAIHNLGTIARSGTKEFFQQLS 111          
The following BLAST results are available for this feature:
BLAST of DN617894 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
ENPL_CATRO1.695e-2357.28Endoplasmin homolog OS=Catharanthus roseus GN=HSP9... [more]
HTPG_THICR2.213e-2356.52Chaperone protein htpG OS=Thiomicrospira crunogena... [more]
HTPG_NITMU4.931e-2352.13Chaperone protein htpG OS=Nitrosospira multiformis... [more]
HTPG_BUCAI4.931e-2356.38Chaperone protein htpG OS=Buchnera aphidicola subs... [more]
HTPG_WOLPM6.440e-2352.48Chaperone protein htpG OS=Wolbachia pipientis wMel... [more]
HTPG_VESOH6.440e-2352.08Chaperone protein htpG OS=Vesicomyosocius okutanii... [more]
HTPG_IDILO6.440e-2352.63Chaperone protein htpG OS=Idiomarina loihiensis GN... [more]
HTPG_BAUCH6.440e-2353.19Chaperone protein htpG OS=Baumannia cicadellinicol... [more]
HTPG_WOLTR8.410e-2350.50Chaperone protein htpG OS=Wolbachia sp. subsp. Bru... [more]
HTPG_RALEH8.410e-2354.74Chaperone protein htpG OS=Ralstonia eutropha (stra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01N08_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001N08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617894 ID=DN617894; Name=DN617894; organism=Citrus sinensis; type=EST; length=316bp
GAGATCAACCAGTGTGTTGAGTTTGATCATCAACACCTTTTACAGCAACA
AGGAGATCTTTCTTCGTGAGCTCATCAGCAACTCCTCCGATGCATTGGAT
AAGATCAGATTTGAAAGCTTGACAGACAAGAGCAAGCTAGATGCCCAACC
AGAGCTTTTCATCCACATTATCCCTGATAAGACCAACAACACTTTGTCTA
TTATTGACAGTGGTATTGGCATGACTAAGGCTGATTTGGTGAACAACCTT
GGTACAATTGCTAGGTCTGGGACCAAAGAGTTCATGGAGGCATTGGCTGC
TGGGGCGGATGTGAGC
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