DN617892

Overview
NameDN617892
Unique NameDN617892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length535
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTUL_VIBVU (Putative elongation factor Tu-like protein OS=Vibrio vulnificus GN=VV1_1204 PE=5 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.606e-28
Identity = 60/91 (65.93%), Postives = 72/91 (79.12%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVL K+EGGRH+PFF GYRPQFY RTTDVTG +S       E  +MVMPGD ++MVVELI P+A ++G+RFAIREGG+TVGAGV+  I E
Sbjct:  218 VYVLSKDEGGRHTPFFKGYRPQFYFRTTDVTGDISL-----PEGVEMVMPGDNIQMVVELISPIAMDEGLRFAIREGGRTVGAGVVAKIFE 303          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU2_VIBVY (Elongation factor Tu 2 OS=Vibrio vulnificus (strain YJ016) GN=tuf2 PE=3 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 2.606e-28
Identity = 60/91 (65.93%), Postives = 72/91 (79.12%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVL K+EGGRH+PFF GYRPQFY RTTDVTG +S       E  +MVMPGD ++MVVELI P+A ++G+RFAIREGG+TVGAGV+  I E
Sbjct:  309 VYVLSKDEGGRHTPFFKGYRPQFYFRTTDVTGDISL-----PEGVEMVMPGDNIQMVVELISPIAMDEGLRFAIREGGRTVGAGVVAKIFE 394          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU2_VIBCH (Elongation factor Tu-B OS=Vibrio cholerae GN=tufB PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.606e-28
Identity = 60/90 (66.67%), Postives = 72/90 (80.00%), Query Frame = -2
Query:  262 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 531
            VYVL K+EGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD VKMVV+LI P+A ++G+RFAIREGG+TVGAGV+  II
Sbjct:  309 VYVLSKDEGGRHTPFFKGYRPQFYFRTTDVTGSI-----ELPEGVEMVMPGDNVKMVVDLIAPIAMDEGLRFAIREGGRTVGAGVVAKII 393          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU2_HALHL (Elongation factor Tu 2 OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.606e-28
Identity = 60/91 (65.93%), Postives = 72/91 (79.12%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVL K+EGGRH+PFF GYRPQFY RTTDVTG V+       E ++MVMPGD VKM V+LI P+A E G+RFAIREGG+TVGAGV+  I++
Sbjct:  311 VYVLSKDEGGRHTPFFNGYRPQFYFRTTDVTGTVTL-----PEGTEMVMPGDNVKMTVQLIAPIAMEDGLRFAIREGGRTVGAGVVSKILD 396          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU1_VIBCH (Elongation factor Tu-A OS=Vibrio cholerae GN=tufA PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.606e-28
Identity = 60/90 (66.67%), Postives = 72/90 (80.00%), Query Frame = -2
Query:  262 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 531
            VYVL K+EGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD VKMVV+LI P+A ++G+RFAIREGG+TVGAGV+  II
Sbjct:  309 VYVLSKDEGGRHTPFFKGYRPQFYFRTTDVTGSI-----ELPEGVEMVMPGDNVKMVVDLIAPIAMDEGLRFAIREGGRTVGAGVVAKII 393          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_SORC5 (Elongation factor Tu OS=Sorangium cellulosum (strain So ce56) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.404e-28
Identity = 62/90 (68.89%), Postives = 70/90 (77.78%), Query Frame = -2
Query:  262 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 531
            VYVLKKEEGGRH+PFF  YRPQFY+RTTDVTG V+       E  KMVMPGD + M +ELI PVA E+ MRFAIREGGKTVGAGV+  I+
Sbjct:  311 VYVLKKEEGGRHTPFFTNYRPQFYIRTTDVTGTVNL-----PEGVKMVMPGDNITMTIELIAPVALEEQMRFAIREGGKTVGAGVVTKIL 395          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_SHEPU (Elongation factor Tu OS=Shewanella putrefaciens GN=tuf PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.404e-28
Identity = 60/90 (66.67%), Postives = 71/90 (78.89%), Query Frame = -2
Query:  262 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 531
            VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD +KMVV LI P+A ++G+RFAIREGG+TVGAGV+  II
Sbjct:  309 VYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMVVTLICPIAMDEGLRFAIREGGRTVGAGVVAKII 393          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_SHEPC (Elongation factor Tu OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.404e-28
Identity = 60/90 (66.67%), Postives = 71/90 (78.89%), Query Frame = -2
Query:  262 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 531
            VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD +KMVV LI P+A ++G+RFAIREGG+TVGAGV+  II
Sbjct:  309 VYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMVVTLICPIAMDEGLRFAIREGGRTVGAGVVAKII 393          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_SHEB8 (Elongation factor Tu OS=Shewanella baltica (strain OS185) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.404e-28
Identity = 60/90 (66.67%), Postives = 71/90 (78.89%), Query Frame = -2
Query:  262 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 531
            VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD +KMVV LI P+A ++G+RFAIREGG+TVGAGV+  II
Sbjct:  309 VYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMVVTLICPIAMDEGLRFAIREGGRTVGAGVVAKII 393          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_MANSM (Elongation factor Tu OS=Mannheimia succiniciproducens (strain MBEL55E) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.404e-28
Identity = 60/91 (65.93%), Postives = 71/91 (78.02%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD +KM V LI P+A +QG+RFAIREGG+TVGAGV+  II+
Sbjct:  309 VYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMTVSLIHPIAMDQGLRFAIREGGRTVGAGVVAKIIK 394          
The following BLAST results are available for this feature:
BLAST of DN617892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTUL_VIBVU2.606e-2865.93Putative elongation factor Tu-like protein OS=Vibr... [more]
EFTU2_VIBVY2.606e-2865.93Elongation factor Tu 2 OS=Vibrio vulnificus (strai... [more]
EFTU2_VIBCH2.606e-2866.67Elongation factor Tu-B OS=Vibrio cholerae GN=tufB ... [more]
EFTU2_HALHL2.606e-2865.93Elongation factor Tu 2 OS=Halorhodospira halophila... [more]
EFTU1_VIBCH2.606e-2866.67Elongation factor Tu-A OS=Vibrio cholerae GN=tufA ... [more]
EFTU_SORC53.404e-2868.89Elongation factor Tu OS=Sorangium cellulosum (stra... [more]
EFTU_SHEPU3.404e-2866.67Elongation factor Tu OS=Shewanella putrefaciens GN... [more]
EFTU_SHEPC3.404e-2866.67Elongation factor Tu OS=Shewanella putrefaciens (s... [more]
EFTU_SHEB83.404e-2866.67Elongation factor Tu OS=Shewanella baltica (strain... [more]
EFTU_MANSM3.404e-2865.93Elongation factor Tu OS=Mannheimia succiniciproduc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01N07_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001N07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617892 ID=DN617892; Name=DN617892; organism=Citrus sinensis; type=EST; length=535bp
CCACGAGGCAAATCAACATTGAGCTGAAGCAACTGAGGAAAAGTGAGTCA
TATTGAATTATCACATGAACATTTTCCAACTAGACTTGACATGAGTTCAA
TGCAAAATAAGAACAAAACTGCAAATTATATGACATTAGGTTCTGGAAGT
TCCTAGAATGGTGAAACTAATTCCATAAAAACTTAAGAATATGAAGTTTA
ACACCGCTCAAAAAAGTAAAAGATAATCCACTGCCCATGAAAGTTCCTAG
TACTATCATTCAATGATGGACTGAATAACACCAGCTCCAACAGTCTTTCC
TCCTTCTCTGATGGCAAATCTCATCCCTTGCTCACAAGCCACTGGCATAA
TAAGCTCCACAACCATCTTGACACGGTCGCCAGGCATAACCATCTTGGAC
TCCTCGTCCTTGTCGTTCATAATAGAAGACACCCTTCCAGTCACATCAGT
GGTCCTCATGTAAAATTGAGGCCTGTAACCCGCAAAGAAAGGTGAGTGCC
TACCACCTTCTTCCTTCTTCAACACATACACAATG
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