DN617892

Overview
NameDN617892
Unique NameDN617892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length535
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_HAES2 (Elongation factor Tu OS=Haemophilus somnus (strain 2336) GN=tuf PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.404e-28
Identity = 60/91 (65.93%), Postives = 71/91 (78.02%), Query Frame = -2 
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD +KM V LI P+A +QG+RFAIREGG+TVGAGV+  II+
Sbjct:  309 VYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMTVSLIHPIAMDQGLRFAIREGGRTVGAGVVAKIIK 394
[Close]
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_HAES1 (Elongation factor Tu OS=Haemophilus somnus (strain 129Pt) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.404e-28
Identity = 60/91 (65.93%), Postives = 71/91 (78.02%), Query Frame = -2 
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD +KM V LI P+A +QG+RFAIREGG+TVGAGV+  II+
Sbjct:  309 VYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMTVSLIHPIAMDQGLRFAIREGGRTVGAGVVAKIIK 394
[Close]
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_FRATW (Elongation factor Tu OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=tuf PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.404e-28
Identity = 60/91 (65.93%), Postives = 71/91 (78.02%), Query Frame = -2 
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVL KEEGGRH+PFF GYRPQFY RTTD+TG V     +  E  +MVMPGD VKM + LI P+A ++G+RFAIREGG+TVGAGV+  IIE
Sbjct:  309 VYVLSKEEGGRHTPFFKGYRPQFYFRTTDITGAV-----ELPEGVEMVMPGDNVKMTITLINPIAMDEGLRFAIREGGRTVGAGVVAKIIE 394
[Close]
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_FRATT (Elongation factor Tu OS=Francisella tularensis subsp. tularensis GN=tuf PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.404e-28
Identity = 60/91 (65.93%), Postives = 71/91 (78.02%), Query Frame = -2 
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVL KEEGGRH+PFF GYRPQFY RTTD+TG V     +  E  +MVMPGD VKM + LI P+A ++G+RFAIREGG+TVGAGV+  IIE
Sbjct:  309 VYVLSKEEGGRHTPFFKGYRPQFYFRTTDITGAV-----ELPEGVEMVMPGDNVKMTITLINPIAMDEGLRFAIREGGRTVGAGVVAKIIE 394
[Close]
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_FRATO (Elongation factor Tu OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=tuf PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.404e-28
Identity = 60/91 (65.93%), Postives = 71/91 (78.02%), Query Frame = -2 
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVL KEEGGRH+PFF GYRPQFY RTTD+TG V     +  E  +MVMPGD VKM + LI P+A ++G+RFAIREGG+TVGAGV+  IIE
Sbjct:  309 VYVLSKEEGGRHTPFFKGYRPQFYFRTTDITGAV-----ELPEGVEMVMPGDNVKMTITLINPIAMDEGLRFAIREGGRTVGAGVVAKIIE 394
[Close]
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_FRATN (Elongation factor Tu OS=Francisella tularensis subsp. novicida (strain U112) GN=tuf PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.404e-28
Identity = 60/91 (65.93%), Postives = 71/91 (78.02%), Query Frame = -2 
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVL KEEGGRH+PFF GYRPQFY RTTD+TG V     +  E  +MVMPGD VKM + LI P+A ++G+RFAIREGG+TVGAGV+  IIE
Sbjct:  309 VYVLSKEEGGRHTPFFKGYRPQFYFRTTDITGAV-----ELPEGVEMVMPGDNVKMTITLINPIAMDEGLRFAIREGGRTVGAGVVAKIIE 394
[Close]
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_FRATM (Elongation factor Tu OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=tuf PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.404e-28
Identity = 60/91 (65.93%), Postives = 71/91 (78.02%), Query Frame = -2 
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVL KEEGGRH+PFF GYRPQFY RTTD+TG V     +  E  +MVMPGD VKM + LI P+A ++G+RFAIREGG+TVGAGV+  IIE
Sbjct:  309 VYVLSKEEGGRHTPFFKGYRPQFYFRTTDITGAV-----ELPEGVEMVMPGDNVKMTITLINPIAMDEGLRFAIREGGRTVGAGVVAKIIE 394
[Close]
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_FRATH (Elongation factor Tu OS=Francisella tularensis subsp. holarctica (strain LVS) GN=tuf PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.404e-28
Identity = 60/91 (65.93%), Postives = 71/91 (78.02%), Query Frame = -2 
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVL KEEGGRH+PFF GYRPQFY RTTD+TG V     +  E  +MVMPGD VKM + LI P+A ++G+RFAIREGG+TVGAGV+  IIE
Sbjct:  309 VYVLSKEEGGRHTPFFKGYRPQFYFRTTDITGAV-----ELPEGVEMVMPGDNVKMTITLINPIAMDEGLRFAIREGGRTVGAGVVAKIIE 394
[Close]
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_FRATF (Elongation factor Tu OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=tuf PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.404e-28
Identity = 60/91 (65.93%), Postives = 71/91 (78.02%), Query Frame = -2 
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVL KEEGGRH+PFF GYRPQFY RTTD+TG V     +  E  +MVMPGD VKM + LI P+A ++G+RFAIREGG+TVGAGV+  IIE
Sbjct:  309 VYVLSKEEGGRHTPFFKGYRPQFYFRTTDITGAV-----ELPEGVEMVMPGDNVKMTITLINPIAMDEGLRFAIREGGRTVGAGVVAKIIE 394
[Close]
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_FRAT1 (Elongation factor Tu OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=tuf PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.404e-28
Identity = 60/91 (65.93%), Postives = 71/91 (78.02%), Query Frame = -2 
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVL KEEGGRH+PFF GYRPQFY RTTD+TG V     +  E  +MVMPGD VKM + LI P+A ++G+RFAIREGG+TVGAGV+  IIE
Sbjct:  309 VYVLSKEEGGRHTPFFKGYRPQFYFRTTDITGAV-----ELPEGVEMVMPGDNVKMTITLINPIAMDEGLRFAIREGGRTVGAGVVAKIIE 394
The following BLAST results are available for this feature:
BLAST of DN617892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_HAES23.404e-2865.93Elongation factor Tu OS=Haemophilus somnus (strain... [more]
EFTU_HAES13.404e-2865.93Elongation factor Tu OS=Haemophilus somnus (strain... [more]
EFTU_FRATW3.404e-2865.93Elongation factor Tu OS=Francisella tularensis sub... [more]
EFTU_FRATT3.404e-2865.93Elongation factor Tu OS=Francisella tularensis sub... [more]
EFTU_FRATO3.404e-2865.93Elongation factor Tu OS=Francisella tularensis sub... [more]
EFTU_FRATN3.404e-2865.93Elongation factor Tu OS=Francisella tularensis sub... [more]
EFTU_FRATM3.404e-2865.93Elongation factor Tu OS=Francisella tularensis sub... [more]
EFTU_FRATH3.404e-2865.93Elongation factor Tu OS=Francisella tularensis sub... [more]
EFTU_FRATF3.404e-2865.93Elongation factor Tu OS=Francisella tularensis sub... [more]
EFTU_FRAT13.404e-2865.93Elongation factor Tu OS=Francisella tularensis sub... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01N07_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001N07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617892 ID=DN617892; Name=DN617892; organism=Citrus sinensis; type=EST; length=535bp
CCACGAGGCAAATCAACATTGAGCTGAAGCAACTGAGGAAAAGTGAGTCA
TATTGAATTATCACATGAACATTTTCCAACTAGACTTGACATGAGTTCAA
TGCAAAATAAGAACAAAACTGCAAATTATATGACATTAGGTTCTGGAAGT
TCCTAGAATGGTGAAACTAATTCCATAAAAACTTAAGAATATGAAGTTTA
ACACCGCTCAAAAAAGTAAAAGATAATCCACTGCCCATGAAAGTTCCTAG
TACTATCATTCAATGATGGACTGAATAACACCAGCTCCAACAGTCTTTCC
TCCTTCTCTGATGGCAAATCTCATCCCTTGCTCACAAGCCACTGGCATAA
TAAGCTCCACAACCATCTTGACACGGTCGCCAGGCATAACCATCTTGGAC
TCCTCGTCCTTGTCGTTCATAATAGAAGACACCCTTCCAGTCACATCAGT
GGTCCTCATGTAAAATTGAGGCCTGTAACCCGCAAAGAAAGGTGAGTGCC
TACCACCTTCTTCCTTCTTCAACACATACACAATG
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