DN617892

Overview
NameDN617892
Unique NameDN617892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length535
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_DICNV (Elongation factor Tu OS=Dichelobacter nodosus (strain VCS1703A) GN=tuf PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.404e-28
Identity = 61/91 (67.03%), Postives = 71/91 (78.02%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVL KEEGGRH+PFF GYRPQFY RTTDVTG          E  +MVMPGD VKM+V+LI P+A ++G+RFAIREGG+TVGAGV+  IIE
Sbjct:  311 VYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGECVL-----PEGVEMVMPGDNVKMIVQLIHPIAMDEGLRFAIREGGRTVGAGVVAKIIE 396          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU2_SHESR (Elongation factor Tu 2 OS=Shewanella sp. (strain MR-7) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.404e-28
Identity = 60/90 (66.67%), Postives = 71/90 (78.89%), Query Frame = -2
Query:  262 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 531
            VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD +KMVV LI P+A ++G+RFAIREGG+TVGAGV+  II
Sbjct:  309 VYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMVVTLICPIAMDEGLRFAIREGGRTVGAGVVAKII 393          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU2_SHESM (Elongation factor Tu 2 OS=Shewanella sp. (strain MR-4) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.404e-28
Identity = 60/90 (66.67%), Postives = 71/90 (78.89%), Query Frame = -2
Query:  262 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 531
            VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD +KMVV LI P+A ++G+RFAIREGG+TVGAGV+  II
Sbjct:  309 VYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMVVTLICPIAMDEGLRFAIREGGRTVGAGVVAKII 393          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU2_SHEON (Elongation factor Tu 2 OS=Shewanella oneidensis GN=tuf2 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.404e-28
Identity = 60/90 (66.67%), Postives = 71/90 (78.89%), Query Frame = -2
Query:  262 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 531
            VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD +KMVV LI P+A ++G+RFAIREGG+TVGAGV+  II
Sbjct:  309 VYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMVVTLICPIAMDEGLRFAIREGGRTVGAGVVAKII 393          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU2_SHELP (Elongation factor Tu 2 OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.404e-28
Identity = 60/90 (66.67%), Postives = 71/90 (78.89%), Query Frame = -2
Query:  262 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 531
            VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD +KMVV LI P+A ++G+RFAIREGG+TVGAGV+  II
Sbjct:  309 VYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMVVTLICPIAMDEGLRFAIREGGRTVGAGVVAKII 393          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU2_SHEB9 (Elongation factor Tu 2 OS=Shewanella baltica (strain OS195) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.404e-28
Identity = 60/90 (66.67%), Postives = 71/90 (78.89%), Query Frame = -2
Query:  262 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 531
            VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD +KMVV LI P+A ++G+RFAIREGG+TVGAGV+  II
Sbjct:  309 VYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMVVTLICPIAMDEGLRFAIREGGRTVGAGVVAKII 393          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU2_SHEB5 (Elongation factor Tu 2 OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=tuf2 PE=3 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 3.404e-28
Identity = 60/90 (66.67%), Postives = 71/90 (78.89%), Query Frame = -2
Query:  262 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 531
            VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD +KMVV LI P+A ++G+RFAIREGG+TVGAGV+  II
Sbjct:  309 VYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMVVTLICPIAMDEGLRFAIREGGRTVGAGVVAKII 393          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU2_PASMU (Elongation factor Tu-B OS=Pasteurella multocida GN=tufB PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.404e-28
Identity = 60/91 (65.93%), Postives = 71/91 (78.02%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD +KM V LI P+A +QG+RFAIREGG+TVGAGV+  II+
Sbjct:  309 VYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMTVSLIHPIAMDQGLRFAIREGGRTVGAGVVAKIIK 394          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU1_SHELP (Elongation factor Tu 1 OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.404e-28
Identity = 60/90 (66.67%), Postives = 71/90 (78.89%), Query Frame = -2
Query:  262 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 531
            VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD +KMVV LI P+A ++G+RFAIREGG+TVGAGV+  II
Sbjct:  309 VYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMVVTLICPIAMDEGLRFAIREGGRTVGAGVVAKII 393          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU1_SHEB9 (Elongation factor Tu 1 OS=Shewanella baltica (strain OS195) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.404e-28
Identity = 60/90 (66.67%), Postives = 71/90 (78.89%), Query Frame = -2
Query:  262 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 531
            VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD +KMVV LI P+A ++G+RFAIREGG+TVGAGV+  II
Sbjct:  309 VYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMVVTLICPIAMDEGLRFAIREGGRTVGAGVVAKII 393          
The following BLAST results are available for this feature:
BLAST of DN617892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_DICNV3.404e-2867.03Elongation factor Tu OS=Dichelobacter nodosus (str... [more]
EFTU2_SHESR3.404e-2866.67Elongation factor Tu 2 OS=Shewanella sp. (strain M... [more]
EFTU2_SHESM3.404e-2866.67Elongation factor Tu 2 OS=Shewanella sp. (strain M... [more]
EFTU2_SHEON3.404e-2866.67Elongation factor Tu 2 OS=Shewanella oneidensis GN... [more]
EFTU2_SHELP3.404e-2866.67Elongation factor Tu 2 OS=Shewanella loihica (stra... [more]
EFTU2_SHEB93.404e-2866.67Elongation factor Tu 2 OS=Shewanella baltica (stra... [more]
EFTU2_SHEB53.404e-2866.67Elongation factor Tu 2 OS=Shewanella baltica (stra... [more]
EFTU2_PASMU3.404e-2865.93Elongation factor Tu-B OS=Pasteurella multocida GN... [more]
EFTU1_SHELP3.404e-2866.67Elongation factor Tu 1 OS=Shewanella loihica (stra... [more]
EFTU1_SHEB93.404e-2866.67Elongation factor Tu 1 OS=Shewanella baltica (stra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01N07_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001N07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617892 ID=DN617892; Name=DN617892; organism=Citrus sinensis; type=EST; length=535bp
CCACGAGGCAAATCAACATTGAGCTGAAGCAACTGAGGAAAAGTGAGTCA
TATTGAATTATCACATGAACATTTTCCAACTAGACTTGACATGAGTTCAA
TGCAAAATAAGAACAAAACTGCAAATTATATGACATTAGGTTCTGGAAGT
TCCTAGAATGGTGAAACTAATTCCATAAAAACTTAAGAATATGAAGTTTA
ACACCGCTCAAAAAAGTAAAAGATAATCCACTGCCCATGAAAGTTCCTAG
TACTATCATTCAATGATGGACTGAATAACACCAGCTCCAACAGTCTTTCC
TCCTTCTCTGATGGCAAATCTCATCCCTTGCTCACAAGCCACTGGCATAA
TAAGCTCCACAACCATCTTGACACGGTCGCCAGGCATAACCATCTTGGAC
TCCTCGTCCTTGTCGTTCATAATAGAAGACACCCTTCCAGTCACATCAGT
GGTCCTCATGTAAAATTGAGGCCTGTAACCCGCAAAGAAAGGTGAGTGCC
TACCACCTTCTTCCTTCTTCAACACATACACAATG
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