DN617892

Overview
NameDN617892
Unique NameDN617892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length535
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU1_SHEB5 (Elongation factor Tu 1 OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.404e-28
Identity = 60/90 (66.67%), Postives = 71/90 (78.89%), Query Frame = -2
Query:  262 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 531
            VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD +KMVV LI P+A ++G+RFAIREGG+TVGAGV+  II
Sbjct:  309 VYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMVVTLICPIAMDEGLRFAIREGGRTVGAGVVAKII 393          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU1_PASMU (Elongation factor Tu-A OS=Pasteurella multocida GN=tufA PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.404e-28
Identity = 60/91 (65.93%), Postives = 71/91 (78.02%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD +KM V LI P+A +QG+RFAIREGG+TVGAGV+  II+
Sbjct:  309 VYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMTVSLIHPIAMDQGLRFAIREGGRTVGAGVVAKIIK 394          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_SCEOB (Elongation factor Tu, chloroplastic OS=Scenedesmus obliquus GN=tufA PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.446e-28
Identity = 59/100 (59.00%), Postives = 77/100 (77.00%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMN---------DKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVL KEEGGRHSPF  GY+PQF++RTTDVTG++ S  +          ++  +KM MPGDR+++ V+LI PVA E+GMRFAIREGG+TVGAGV+ +I+E
Sbjct:  319 VYVLTKEEGGRHSPFLVGYQPQFFIRTTDVTGKIVSFTHIQMKNPSSVAEEHSNKMAMPGDRIEVTVQLIYPVAVEKGMRFAIREGGRTVGAGVVTNILE 418          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_PETMO (Elongation factor Tu OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=tuf PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.446e-28
Identity = 61/91 (67.03%), Postives = 71/91 (78.02%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVLKKEEGGRH+PF  GYRPQFY+RT DVTG +    +     ++MVMPGD + M VELI PVA E+GMRFAIREGG+TVGAGV+  IIE
Sbjct:  313 VYVLKKEEGGRHTPFTKGYRPQFYIRTADVTGTLVEFSSG----AEMVMPGDNINMTVELIYPVALEEGMRFAIREGGRTVGAGVVTEIIE 399          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_NITOC (Elongation factor Tu OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.446e-28
Identity = 57/91 (62.64%), Postives = 71/91 (78.02%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVL K+EGGRH+PFF GYRPQFY RTTDVTG +     D  +  +MVMPGD ++M V LI P+A E+G+RFA+REGG+TVGAGV+  +IE
Sbjct:  311 VYVLSKDEGGRHTPFFTGYRPQFYFRTTDVTGAI-----DLPDGVEMVMPGDNIQMTVSLIAPIAMEEGLRFAVREGGRTVGAGVVSKVIE 396          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_MARAV (Elongation factor Tu OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=tuf PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.446e-28
Identity = 62/91 (68.13%), Postives = 69/91 (75.82%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVL KEEGGRH+PFF GYRPQFY RTTDVTG       +  E  +MVMPGD VKM V LI P+A E G+RFAIREGG+TVGAGV+  IIE
Sbjct:  313 VYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGSC-----ELPEGVEMVMPGDNVKMTVTLIAPIAMEDGLRFAIREGGRTVGAGVVAKIIE 398          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_FRAP2 (Elongation factor Tu OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=tuf PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.446e-28
Identity = 59/91 (64.84%), Postives = 71/91 (78.02%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVL KEEGGRH+PFF GYRPQFY RTTD+TG V     +  E  +MVMPGD +KM + LI P+A ++G+RFAIREGG+TVGAGV+  IIE
Sbjct:  309 VYVLSKEEGGRHTPFFKGYRPQFYFRTTDITGAV-----ELPEGVEMVMPGDNIKMTITLINPIAMDEGLRFAIREGGRTVGAGVVAKIIE 394          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_BAUCH (Elongation factor Tu OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=tuf PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.446e-28
Identity = 57/91 (62.64%), Postives = 72/91 (79.12%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VY+L K+EGGRH+PFF GYRPQFY RTTDVTG +   +     + +MVMPGD +KM+V LI P+A +QG+RFAIREGG+TVGAG++  IIE
Sbjct:  309 VYILNKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPI-----DVEMVMPGDNIKMIVNLIAPIAMDQGLRFAIREGGRTVGAGIVTDIIE 394          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_SHEDO (Elongation factor Tu OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=tuf PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.806e-28
Identity = 60/90 (66.67%), Postives = 70/90 (77.78%), Query Frame = -2
Query:  262 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 531
            VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD +KMVV LI P+A + G+RFAIREGG+TVGAGV+  II
Sbjct:  309 VYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMVVTLIYPIAMDDGLRFAIREGGRTVGAGVVAKII 393          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_SHEAM (Elongation factor Tu OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.806e-28
Identity = 60/91 (65.93%), Postives = 71/91 (78.02%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD +KMVV LI P+A ++G+RFAIREGG+TVGAGV+  I E
Sbjct:  309 VYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMVVTLICPIAMDEGLRFAIREGGRTVGAGVVAKIHE 394          
The following BLAST results are available for this feature:
BLAST of DN617892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU1_SHEB53.404e-2866.67Elongation factor Tu 1 OS=Shewanella baltica (stra... [more]
EFTU1_PASMU3.404e-2865.93Elongation factor Tu-A OS=Pasteurella multocida GN... [more]
EFTU_SCEOB4.446e-2859.00Elongation factor Tu, chloroplastic OS=Scenedesmus... [more]
EFTU_PETMO4.446e-2867.03Elongation factor Tu OS=Petrotoga mobilis (strain ... [more]
EFTU_NITOC4.446e-2862.64Elongation factor Tu OS=Nitrosococcus oceani (stra... [more]
EFTU_MARAV4.446e-2868.13Elongation factor Tu OS=Marinobacter aquaeolei (st... [more]
EFTU_FRAP24.446e-2864.84Elongation factor Tu OS=Francisella philomiragia s... [more]
EFTU_BAUCH4.446e-2862.64Elongation factor Tu OS=Baumannia cicadellinicola ... [more]
EFTU_SHEDO5.806e-2866.67Elongation factor Tu OS=Shewanella denitrificans (... [more]
EFTU_SHEAM5.806e-2865.93Elongation factor Tu OS=Shewanella amazonensis (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01N07_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001N07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617892 ID=DN617892; Name=DN617892; organism=Citrus sinensis; type=EST; length=535bp
CCACGAGGCAAATCAACATTGAGCTGAAGCAACTGAGGAAAAGTGAGTCA
TATTGAATTATCACATGAACATTTTCCAACTAGACTTGACATGAGTTCAA
TGCAAAATAAGAACAAAACTGCAAATTATATGACATTAGGTTCTGGAAGT
TCCTAGAATGGTGAAACTAATTCCATAAAAACTTAAGAATATGAAGTTTA
ACACCGCTCAAAAAAGTAAAAGATAATCCACTGCCCATGAAAGTTCCTAG
TACTATCATTCAATGATGGACTGAATAACACCAGCTCCAACAGTCTTTCC
TCCTTCTCTGATGGCAAATCTCATCCCTTGCTCACAAGCCACTGGCATAA
TAAGCTCCACAACCATCTTGACACGGTCGCCAGGCATAACCATCTTGGAC
TCCTCGTCCTTGTCGTTCATAATAGAAGACACCCTTCCAGTCACATCAGT
GGTCCTCATGTAAAATTGAGGCCTGTAACCCGCAAAGAAAGGTGAGTGCC
TACCACCTTCTTCCTTCTTCAACACATACACAATG
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