DN617892

Overview
NameDN617892
Unique NameDN617892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length535
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_NITSB (Elongation factor Tu OS=Nitratiruptor sp. (strain SB155-2) GN=tuf PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.806e-28
Identity = 60/91 (65.93%), Postives = 72/91 (79.12%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            +YVL KEEGGRH+PFF+GYRPQFY+RTTDVTG ++       E  +MVMPGD VK+  ELI P+A E+G RFAIREGG+TVGAGV+  IIE
Sbjct:  314 IYVLTKEEGGRHTPFFSGYRPQFYVRTTDVTGTITL-----PEGVEMVMPGDNVKINAELIAPIALEEGTRFAIREGGRTVGAGVVSKIIE 399          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_NEIMF (Elongation factor Tu OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.806e-28
Identity = 60/90 (66.67%), Postives = 72/90 (80.00%), Query Frame = -2
Query:  262 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 531
            VYVL KEEGGRH+PFFA YRPQFY RTTDVTG V+      +E  +MVMPG+ V + VELI P+A E+G+RFAIREGG+TVGAGV+ S+I
Sbjct:  309 VYVLSKEEGGRHTPFFANYRPQFYFRTTDVTGAVTL-----EEGVEMVMPGENVTITVELIAPIAMEEGLRFAIREGGRTVGAGVVSSVI 393          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_NEIMB (Elongation factor Tu OS=Neisseria meningitidis serogroup B GN=tufA PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.806e-28
Identity = 60/90 (66.67%), Postives = 72/90 (80.00%), Query Frame = -2
Query:  262 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 531
            VYVL KEEGGRH+PFFA YRPQFY RTTDVTG V+      +E  +MVMPG+ V + VELI P+A E+G+RFAIREGG+TVGAGV+ S+I
Sbjct:  309 VYVLSKEEGGRHTPFFANYRPQFYFRTTDVTGAVTL-----EEGVEMVMPGENVTITVELIAPIAMEEGLRFAIREGGRTVGAGVVSSVI 393          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_NEIMA (Elongation factor Tu OS=Neisseria meningitidis serogroup A GN=tufA PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.806e-28
Identity = 60/90 (66.67%), Postives = 72/90 (80.00%), Query Frame = -2
Query:  262 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 531
            VYVL KEEGGRH+PFFA YRPQFY RTTDVTG V+      +E  +MVMPG+ V + VELI P+A E+G+RFAIREGG+TVGAGV+ S+I
Sbjct:  309 VYVLSKEEGGRHTPFFANYRPQFYFRTTDVTGAVTL-----EEGVEMVMPGENVTITVELIAPIAMEEGLRFAIREGGRTVGAGVVSSVI 393          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_SPHWW (Elongation factor Tu OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=tuf PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 7.583e-28
Identity = 60/89 (67.42%), Postives = 72/89 (80.90%), Query Frame = -2
Query:  265 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSI 531
            VYVL KEEGGRH+PFFA YRPQFY RTTDVTG V     +  E ++MVMPGD VK+ V+LI P+A E+G+RF+IREGG+TVGAGV+ SI
Sbjct:  311 VYVLSKEEGGRHTPFFANYRPQFYFRTTDVTGTV-----ELPEGTEMVMPGDNVKLGVKLIAPIAMEEGLRFSIREGGRTVGAGVVSSI 394          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_PSEA6 (Elongation factor Tu OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 7.583e-28
Identity = 60/90 (66.67%), Postives = 71/90 (78.89%), Query Frame = -2
Query:  262 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 531
            VYVL K+EGGRH+PFF GYRPQFY RTTDVTG V     +  E  +MVMPGD +K VVELI P+A ++G+RFAIREGG+TVGAGV+  II
Sbjct:  309 VYVLSKDEGGRHTPFFKGYRPQFYFRTTDVTGAV-----ELPEGVEMVMPGDNLKFVVELIAPIAMDEGLRFAIREGGRTVGAGVVAKII 393          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_HAEIN (Elongation factor Tu OS=Haemophilus influenzae GN=tufA PE=3 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 7.583e-28
Identity = 59/91 (64.84%), Postives = 71/91 (78.02%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVL K+EGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD +KM V LI P+A +QG+RFAIREGG+TVGAGV+  II+
Sbjct:  309 VYVLSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMTVSLIHPIAMDQGLRFAIREGGRTVGAGVVAKIIK 394          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_HAEIG (Elongation factor Tu OS=Haemophilus influenzae (strain PittGG) GN=tuf PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 7.583e-28
Identity = 59/91 (64.84%), Postives = 71/91 (78.02%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVL K+EGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD +KM V LI P+A +QG+RFAIREGG+TVGAGV+  II+
Sbjct:  309 VYVLSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMTVSLIHPIAMDQGLRFAIREGGRTVGAGVVAKIIK 394          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_HAEIE (Elongation factor Tu OS=Haemophilus influenzae (strain PittEE) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 7.583e-28
Identity = 59/91 (64.84%), Postives = 71/91 (78.02%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVL K+EGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD +KM V LI P+A +QG+RFAIREGG+TVGAGV+  II+
Sbjct:  309 VYVLSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMTVSLIHPIAMDQGLRFAIREGGRTVGAGVVAKIIK 394          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_HAEDU (Elongation factor Tu OS=Haemophilus ducreyi GN=tufA PE=3 SV=3)

HSP 1 Score: 123.25 bits (308), Expect = 7.583e-28
Identity = 59/91 (64.84%), Postives = 71/91 (78.02%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD +KM V LI P+A ++G+RFAIREGG+TVGAGV+  II+
Sbjct:  309 VYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMTVSLIHPIAMDEGLRFAIREGGRTVGAGVVAKIIK 394          
The following BLAST results are available for this feature:
BLAST of DN617892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_NITSB5.806e-2865.93Elongation factor Tu OS=Nitratiruptor sp. (strain ... [more]
EFTU_NEIMF5.806e-2866.67Elongation factor Tu OS=Neisseria meningitidis ser... [more]
EFTU_NEIMB5.806e-2866.67Elongation factor Tu OS=Neisseria meningitidis ser... [more]
EFTU_NEIMA5.806e-2866.67Elongation factor Tu OS=Neisseria meningitidis ser... [more]
EFTU_SPHWW7.583e-2867.42Elongation factor Tu OS=Sphingomonas wittichii (st... [more]
EFTU_PSEA67.583e-2866.67Elongation factor Tu OS=Pseudoalteromonas atlantic... [more]
EFTU_HAEIN7.583e-2864.84Elongation factor Tu OS=Haemophilus influenzae GN=... [more]
EFTU_HAEIG7.583e-2864.84Elongation factor Tu OS=Haemophilus influenzae (st... [more]
EFTU_HAEIE7.583e-2864.84Elongation factor Tu OS=Haemophilus influenzae (st... [more]
EFTU_HAEDU7.583e-2864.84Elongation factor Tu OS=Haemophilus ducreyi GN=tuf... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01N07_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001N07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617892 ID=DN617892; Name=DN617892; organism=Citrus sinensis; type=EST; length=535bp
CCACGAGGCAAATCAACATTGAGCTGAAGCAACTGAGGAAAAGTGAGTCA
TATTGAATTATCACATGAACATTTTCCAACTAGACTTGACATGAGTTCAA
TGCAAAATAAGAACAAAACTGCAAATTATATGACATTAGGTTCTGGAAGT
TCCTAGAATGGTGAAACTAATTCCATAAAAACTTAAGAATATGAAGTTTA
ACACCGCTCAAAAAAGTAAAAGATAATCCACTGCCCATGAAAGTTCCTAG
TACTATCATTCAATGATGGACTGAATAACACCAGCTCCAACAGTCTTTCC
TCCTTCTCTGATGGCAAATCTCATCCCTTGCTCACAAGCCACTGGCATAA
TAAGCTCCACAACCATCTTGACACGGTCGCCAGGCATAACCATCTTGGAC
TCCTCGTCCTTGTCGTTCATAATAGAAGACACCCTTCCAGTCACATCAGT
GGTCCTCATGTAAAATTGAGGCCTGTAACCCGCAAAGAAAGGTGAGTGCC
TACCACCTTCTTCCTTCTTCAACACATACACAATG
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