DN617892

Overview
NameDN617892
Unique NameDN617892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length535
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_PSEFS (Elongation factor Tu OS=Pseudomonas fluorescens (strain SBW25) GN=tuf PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.293e-27
Identity = 61/91 (67.03%), Postives = 69/91 (75.82%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVL KEEGGRH+PFF GYRPQFY RTTDVTG       +  E  +MVMPGD +KMVV LI  +A E G+RFAIREGG+TVGAGV+  IIE
Sbjct:  312 VYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGNC-----ELPEGVEMVMPGDNIKMVVTLIKTIAMEDGLRFAIREGGRTVGAGVVAKIIE 397          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_MAGSA (Elongation factor Tu OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.293e-27
Identity = 59/90 (65.56%), Postives = 71/90 (78.89%), Query Frame = -2
Query:  259 YVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 528
            Y+L KEEGGRH+PFF  YRPQFY RTTDVTG V+       E ++MVMPGD VKM+V LI P+A +QG+RFAIREGG+TVGAGV+  II+
Sbjct:  312 YILNKEEGGRHTPFFTNYRPQFYFRTTDVTGVVAL-----PEGTEMVMPGDNVKMIVTLIAPIAMDQGLRFAIREGGRTVGAGVVAKIIK 396          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_LAWIP (Elongation factor Tu OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=tuf PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.293e-27
Identity = 60/91 (65.93%), Postives = 71/91 (78.02%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVL KEEGGRH+PFF+GYRPQFY RTTDVTG ++      +E  +MVMPGD     VELI P+A EQG+RFAIREGG+TVGAGV+  I+E
Sbjct:  312 VYVLSKEEGGRHTPFFSGYRPQFYCRTTDVTGVITL-----NEGVEMVMPGDNATFNVELIYPIAMEQGLRFAIREGGRTVGAGVVTEIVE 397          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_DINSH (Elongation factor Tu OS=Dinoroseobacter shibae (strain DFL 12) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.293e-27
Identity = 60/90 (66.67%), Postives = 70/90 (77.78%), Query Frame = -2
Query:  259 YVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 528
            Y+L KEEGGRH+PFFA YRPQFY RTTDVTG V+       E ++MVMPGD +K  VELI P+A E G+RFAIREGG+TVGAGV+  IIE
Sbjct:  307 YILTKEEGGRHTPFFANYRPQFYFRTTDVTGTVTL-----PEGTEMVMPGDNLKFGVELIAPIAMEDGLRFAIREGGRTVGAGVVSKIIE 391          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_CLOPS (Elongation factor Tu OS=Clostridium perfringens (strain SM101 / Type A) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.293e-27
Identity = 60/91 (65.93%), Postives = 71/91 (78.02%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVLKKEEGGRH+PFF GYRPQFY RTTDVTG +        E  +MVMPGD + M VELI  +A ++G+RFAIREGG+TVG+GV+ SIIE
Sbjct:  312 VYVLKKEEGGRHTPFFDGYRPQFYFRTTDVTGSIK-----LPEGMEMVMPGDHIDMEVELITEIAMDEGLRFAIREGGRTVGSGVVTSIIE 397          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_CLOPE (Elongation factor Tu OS=Clostridium perfringens GN=tufA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.293e-27
Identity = 60/91 (65.93%), Postives = 71/91 (78.02%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVLKKEEGGRH+PFF GYRPQFY RTTDVTG +        E  +MVMPGD + M VELI  +A ++G+RFAIREGG+TVG+GV+ SIIE
Sbjct:  312 VYVLKKEEGGRHTPFFDGYRPQFYFRTTDVTGSIK-----LPEGMEMVMPGDHIDMEVELITEIAMDEGLRFAIREGGRTVGSGVVTSIIE 397          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_CLOP1 (Elongation factor Tu OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.293e-27
Identity = 60/91 (65.93%), Postives = 71/91 (78.02%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVLKKEEGGRH+PFF GYRPQFY RTTDVTG +        E  +MVMPGD + M VELI  +A ++G+RFAIREGG+TVG+GV+ SIIE
Sbjct:  312 VYVLKKEEGGRHTPFFDGYRPQFYFRTTDVTGSIK-----LPEGMEMVMPGDHIDMEVELITEIAMDEGLRFAIREGGRTVGSGVVTSIIE 397          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_BORPE (Elongation factor Tu OS=Bordetella pertussis GN=tuf1 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.293e-27
Identity = 57/91 (62.64%), Postives = 71/91 (78.02%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VY+L KEEGGRH+PFF GYRPQFY RTTDVTG +     D   + +MV+PGD V M V+L+ P+A E+G+RFAIREGG+TVGAGV+  II+
Sbjct:  311 VYILSKEEGGRHTPFFNGYRPQFYFRTTDVTGTI-----DLPADKEMVLPGDNVSMTVKLLAPIAMEEGLRFAIREGGRTVGAGVVAKIIK 396          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_BORPA (Elongation factor Tu OS=Bordetella parapertussis GN=tuf1 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.293e-27
Identity = 57/91 (62.64%), Postives = 71/91 (78.02%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VY+L KEEGGRH+PFF GYRPQFY RTTDVTG +     D   + +MV+PGD V M V+L+ P+A E+G+RFAIREGG+TVGAGV+  II+
Sbjct:  311 VYILSKEEGGRHTPFFNGYRPQFYFRTTDVTGTI-----DLPADKEMVLPGDNVSMTVKLLAPIAMEEGLRFAIREGGRTVGAGVVAKIIK 396          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_BORBR (Elongation factor Tu OS=Bordetella bronchiseptica GN=tuf1 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.293e-27
Identity = 57/91 (62.64%), Postives = 71/91 (78.02%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VY+L KEEGGRH+PFF GYRPQFY RTTDVTG +     D   + +MV+PGD V M V+L+ P+A E+G+RFAIREGG+TVGAGV+  II+
Sbjct:  311 VYILSKEEGGRHTPFFNGYRPQFYFRTTDVTGTI-----DLPADKEMVLPGDNVSMTVKLLAPIAMEEGLRFAIREGGRTVGAGVVAKIIK 396          
The following BLAST results are available for this feature:
BLAST of DN617892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_PSEFS1.293e-2767.03Elongation factor Tu OS=Pseudomonas fluorescens (s... [more]
EFTU_MAGSA1.293e-2765.56Elongation factor Tu OS=Magnetospirillum magneticu... [more]
EFTU_LAWIP1.293e-2765.93Elongation factor Tu OS=Lawsonia intracellularis (... [more]
EFTU_DINSH1.293e-2766.67Elongation factor Tu OS=Dinoroseobacter shibae (st... [more]
EFTU_CLOPS1.293e-2765.93Elongation factor Tu OS=Clostridium perfringens (s... [more]
EFTU_CLOPE1.293e-2765.93Elongation factor Tu OS=Clostridium perfringens GN... [more]
EFTU_CLOP11.293e-2765.93Elongation factor Tu OS=Clostridium perfringens (s... [more]
EFTU_BORPE1.293e-2762.64Elongation factor Tu OS=Bordetella pertussis GN=tu... [more]
EFTU_BORPA1.293e-2762.64Elongation factor Tu OS=Bordetella parapertussis G... [more]
EFTU_BORBR1.293e-2762.64Elongation factor Tu OS=Bordetella bronchiseptica ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01N07_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001N07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617892 ID=DN617892; Name=DN617892; organism=Citrus sinensis; type=EST; length=535bp
CCACGAGGCAAATCAACATTGAGCTGAAGCAACTGAGGAAAAGTGAGTCA
TATTGAATTATCACATGAACATTTTCCAACTAGACTTGACATGAGTTCAA
TGCAAAATAAGAACAAAACTGCAAATTATATGACATTAGGTTCTGGAAGT
TCCTAGAATGGTGAAACTAATTCCATAAAAACTTAAGAATATGAAGTTTA
ACACCGCTCAAAAAAGTAAAAGATAATCCACTGCCCATGAAAGTTCCTAG
TACTATCATTCAATGATGGACTGAATAACACCAGCTCCAACAGTCTTTCC
TCCTTCTCTGATGGCAAATCTCATCCCTTGCTCACAAGCCACTGGCATAA
TAAGCTCCACAACCATCTTGACACGGTCGCCAGGCATAACCATCTTGGAC
TCCTCGTCCTTGTCGTTCATAATAGAAGACACCCTTCCAGTCACATCAGT
GGTCCTCATGTAAAATTGAGGCCTGTAACCCGCAAAGAAAGGTGAGTGCC
TACCACCTTCTTCCTTCTTCAACACATACACAATG
back to top