DN617892

Overview
NameDN617892
Unique NameDN617892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length535
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_CHLVU (Elongation factor Tu, chloroplastic OS=Chlorella vulgaris GN=tufA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 3.514e-33
Identity = 63/90 (70.00%), Postives = 78/90 (86.67%), Query Frame = -2
Query:  262 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 531
            VYVL KEEGGRH+PFF GYRPQFY+RTTDVTG++ S   D +  ++MVMPGDR+KM+VELI P+A E+GMRFAIREGG+TVGAGV+ +I+
Sbjct:  319 VYVLNKEEGGRHTPFFPGYRPQFYVRTTDVTGKIESFRADDNTATQMVMPGDRIKMIVELIQPIAIEKGMRFAIREGGRTVGAGVVSTIV 408          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_PROMS (Elongation factor Tu OS=Prochlorococcus marinus (strain AS9601) GN=tuf PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 4.590e-33
Identity = 64/91 (70.33%), Postives = 78/91 (85.71%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVLKKEEGGRH+PFFAGYRPQFY+RTTDVTG++++  +D     +MVMPGDR+KM  ELI PVA EQGMRFAIREGG+T+GAGV+  I++
Sbjct:  309 VYVLKKEEGGRHTPFFAGYRPQFYIRTTDVTGQITAFTSDDGSNVEMVMPGDRIKMTGELICPVAIEQGMRFAIREGGRTIGAGVVSKILK 399          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_PROM9 (Elongation factor Tu OS=Prochlorococcus marinus (strain MIT 9312) GN=tuf PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 4.590e-33
Identity = 64/91 (70.33%), Postives = 78/91 (85.71%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVLKKEEGGRH+PFFAGYRPQFY+RTTDVTG++++  +D     +MVMPGDR+KM  ELI PVA EQGMRFAIREGG+T+GAGV+  I++
Sbjct:  309 VYVLKKEEGGRHTPFFAGYRPQFYIRTTDVTGQITAFTSDDGSNVEMVMPGDRIKMTGELICPVAIEQGMRFAIREGGRTIGAGVVSKILK 399          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_PROM0 (Elongation factor Tu OS=Prochlorococcus marinus (strain MIT 9301) GN=tuf PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 4.590e-33
Identity = 64/91 (70.33%), Postives = 78/91 (85.71%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVLKKEEGGRH+PFFAGYRPQFY+RTTDVTG++++  +D     +MVMPGDR+KM  ELI PVA EQGMRFAIREGG+T+GAGV+  I++
Sbjct:  309 VYVLKKEEGGRHTPFFAGYRPQFYIRTTDVTGQITAFTSDDGSNVEMVMPGDRIKMTGELICPVAIEQGMRFAIREGGRTIGAGVVSKILK 399          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_LEPTE (Elongation factor Tu, chloroplastic OS=Leptosira terrestris GN=tufA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 4.590e-33
Identity = 61/90 (67.78%), Postives = 79/90 (87.78%), Query Frame = -2
Query:  262 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 531
            VY+L ++EGGRH+PFFAGYRPQFY+RTTDVTG++ +   D D+ ++MVMPGDR+KM VELI P+A E+GMRFAIREGG+TVGAGV+ +I+
Sbjct:  319 VYILTRDEGGRHTPFFAGYRPQFYVRTTDVTGKIETFRTDDDQPTQMVMPGDRIKMEVELIQPIAIEKGMRFAIREGGRTVGAGVVSAIV 408          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_PROMA (Elongation factor Tu OS=Prochlorococcus marinus GN=tuf PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 5.994e-33
Identity = 65/91 (71.43%), Postives = 77/91 (84.62%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVLKKEEGGRH+PFFAGYRPQFY+RTTDVTG++++   D     +MVMPGDR+KM  ELI PVA EQGMRFAIREGG+T+GAGV+  II+
Sbjct:  309 VYVLKKEEGGRHTPFFAGYRPQFYIRTTDVTGQITAFTADDGSSVEMVMPGDRIKMTGELICPVAIEQGMRFAIREGGRTIGAGVVSKIIK 399          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_PROM4 (Elongation factor Tu OS=Prochlorococcus marinus (strain MIT 9211) GN=tuf PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 5.994e-33
Identity = 65/91 (71.43%), Postives = 77/91 (84.62%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVLKKEEGGRH+PFFAGYRPQFY+RTTDVTG++++   D     +MVMPGDR+KM  ELI PVA EQGMRFAIREGG+T+GAGV+  II+
Sbjct:  309 VYVLKKEEGGRHTPFFAGYRPQFYIRTTDVTGQITAFTADDGSNVEMVMPGDRIKMTGELICPVAIEQGMRFAIREGGRTIGAGVVSKIIK 399          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_OLTVI (Elongation factor Tu, chloroplastic OS=Oltmannsiellopsis viridis GN=tufA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 5.994e-33
Identity = 65/90 (72.22%), Postives = 77/90 (85.56%), Query Frame = -2
Query:  262 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 531
            VYVL KEEGGRH+PFF GYRPQFY+RTTDVTG++ S + D    S+MVMPGDRVKM+VELI P+A E+GMRFAIREGG+TVGAGV+  I+
Sbjct:  320 VYVLTKEEGGRHTPFFPGYRPQFYVRTTDVTGKIESFVADDGSASQMVMPGDRVKMLVELINPIAVEKGMRFAIREGGRTVGAGVVSEIL 409          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_SYNPX (Elongation factor Tu OS=Synechococcus sp. (strain WH8102) GN=tuf PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.022e-32
Identity = 65/91 (71.43%), Postives = 76/91 (83.52%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVLKKEEGGRH+PFFAGYRPQFY+RTTDVTG++++   D     +MVMPGDR+KM  ELI PVA E GMRFAIREGG+T+GAGV+  IIE
Sbjct:  309 VYVLKKEEGGRHTPFFAGYRPQFYIRTTDVTGQITAFTADDGSAVEMVMPGDRIKMTGELICPVAMENGMRFAIREGGRTIGAGVVSKIIE 399          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_ACAM1 (Elongation factor Tu OS=Acaryochloris marina (strain MBIC 11017) GN=tuf PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.022e-32
Identity = 63/91 (69.23%), Postives = 77/91 (84.62%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VY+LKK+EGGRH+PFF GYRPQFY+RTTDVTG +S+   D    ++MVMPGDR+KM VELI P+A EQGMRFAIREGG+TVGAGV+  I++
Sbjct:  319 VYILKKDEGGRHTPFFPGYRPQFYVRTTDVTGTISAFTADDGSAAEMVMPGDRIKMTVELINPIAIEQGMRFAIREGGRTVGAGVVSKILK 409          
The following BLAST results are available for this feature:
BLAST of DN617892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_CHLVU3.514e-3370.00Elongation factor Tu, chloroplastic OS=Chlorella v... [more]
EFTU_PROMS4.590e-3370.33Elongation factor Tu OS=Prochlorococcus marinus (s... [more]
EFTU_PROM94.590e-3370.33Elongation factor Tu OS=Prochlorococcus marinus (s... [more]
EFTU_PROM04.590e-3370.33Elongation factor Tu OS=Prochlorococcus marinus (s... [more]
EFTU_LEPTE4.590e-3367.78Elongation factor Tu, chloroplastic OS=Leptosira t... [more]
EFTU_PROMA5.994e-3371.43Elongation factor Tu OS=Prochlorococcus marinus GN... [more]
EFTU_PROM45.994e-3371.43Elongation factor Tu OS=Prochlorococcus marinus (s... [more]
EFTU_OLTVI5.994e-3372.22Elongation factor Tu, chloroplastic OS=Oltmannsiel... [more]
EFTU_SYNPX1.022e-3271.43Elongation factor Tu OS=Synechococcus sp. (strain ... [more]
EFTU_ACAM11.022e-3269.23Elongation factor Tu OS=Acaryochloris marina (stra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01N07_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001N07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617892 ID=DN617892; Name=DN617892; organism=Citrus sinensis; type=EST; length=535bp
CCACGAGGCAAATCAACATTGAGCTGAAGCAACTGAGGAAAAGTGAGTCA
TATTGAATTATCACATGAACATTTTCCAACTAGACTTGACATGAGTTCAA
TGCAAAATAAGAACAAAACTGCAAATTATATGACATTAGGTTCTGGAAGT
TCCTAGAATGGTGAAACTAATTCCATAAAAACTTAAGAATATGAAGTTTA
ACACCGCTCAAAAAAGTAAAAGATAATCCACTGCCCATGAAAGTTCCTAG
TACTATCATTCAATGATGGACTGAATAACACCAGCTCCAACAGTCTTTCC
TCCTTCTCTGATGGCAAATCTCATCCCTTGCTCACAAGCCACTGGCATAA
TAAGCTCCACAACCATCTTGACACGGTCGCCAGGCATAACCATCTTGGAC
TCCTCGTCCTTGTCGTTCATAATAGAAGACACCCTTCCAGTCACATCAGT
GGTCCTCATGTAAAATTGAGGCCTGTAACCCGCAAAGAAAGGTGAGTGCC
TACCACCTTCTTCCTTCTTCAACACATACACAATG
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