DN617892

Overview
NameDN617892
Unique NameDN617892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length535
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6850 contig Csv1_Contig6850:708..1242. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_GUITH (Elongation factor Tu, chloroplastic OS=Guillardia theta GN=tufA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 5.075e-32
Identity = 62/91 (68.13%), Postives = 76/91 (83.52%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVL KEEGGRH+PFF+GYRPQFY+RTTDVTG ++   +D    ++MVMPGDR+KM  +LI P+A E+GMRFAIREGG+TVGAGV+  IIE
Sbjct:  318 VYVLTKEEGGRHTPFFSGYRPQFYVRTTDVTGTIAQFTSDDGSTAEMVMPGDRIKMTAQLIHPIAIEKGMRFAIREGGRTVGAGVVSKIIE 408          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_CYAME (Elongation factor Tu, chloroplastic OS=Cyanidioschyzon merolae GN=tufA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 5.075e-32
Identity = 64/91 (70.33%), Postives = 74/91 (81.32%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVL KEEGGRH+PFF GYRPQFY+RTTDVTG +     D   +++MVMPGDR+KM V LI PVA EQGMRFAIREGG+TVGAGV+  I+E
Sbjct:  320 VYVLTKEEGGRHTPFFPGYRPQFYVRTTDVTGTIEDFTADDGSKAEMVMPGDRIKMCVNLIYPVAIEQGMRFAIREGGRTVGAGVVTKILE 410          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_SYNSC (Elongation factor Tu OS=Synechococcus sp. (strain CC9605) GN=tuf PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 6.628e-32
Identity = 63/91 (69.23%), Postives = 76/91 (83.52%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVLKKEEGGRH+PFFAGYRPQFY+RTTDVTG++++   +     +MVMPGD ++M  ELI PVA EQGMRFAIREGG+T+GAGV+  IIE
Sbjct:  309 VYVLKKEEGGRHTPFFAGYRPQFYIRTTDVTGQITAFTAEDGSNVEMVMPGDNIQMTGELICPVAIEQGMRFAIREGGRTIGAGVVSKIIE 399          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_SYNR3 (Elongation factor Tu OS=Synechococcus sp. (strain RCC307) GN=tuf PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 6.628e-32
Identity = 64/91 (70.33%), Postives = 76/91 (83.52%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVLKKEEGGRH+PFFAGYRPQFY+RTTDVTG++++  +      +MVMPGD +KM  ELI PVA EQGMRFAIREGG+T+GAGV+  IIE
Sbjct:  309 VYVLKKEEGGRHTPFFAGYRPQFYIRTTDVTGQITAFTDRDGGNVEMVMPGDNIKMTGELICPVAIEQGMRFAIREGGRTIGAGVVTKIIE 399          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_GRATL (Elongation factor Tu, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=tufA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 6.628e-32
Identity = 62/91 (68.13%), Postives = 75/91 (82.42%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VY+L KEEGGRH+PFF+GYRPQFY+RTTDVTG ++    D    ++MVMPGDR+KM  ELI P+A EQGMRFAIREGG+TVGAGV+  I+E
Sbjct:  319 VYILTKEEGGRHTPFFSGYRPQFYVRTTDVTGTITQFTADDGSAAEMVMPGDRIKMSAELINPIAIEQGMRFAIREGGRTVGAGVVSKILE 409          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_BIGNA (Elongation factor Tu, chloroplastic OS=Bigelowiella natans GN=tufA PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 8.656e-32
Identity = 61/91 (67.03%), Postives = 79/91 (86.81%), Query Frame = -2
Query:  262 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDE-ESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 531
            VY+L KEEGGRH+PFF GYRPQFY+RTTDVTG++ S+ +D+D  E +MV+PGDRV M VEL+ P+A E+GMRFAIREGG+TVGAGV+ +++
Sbjct:  319 VYILTKEEGGRHTPFFKGYRPQFYVRTTDVTGKIESLKSDEDNTEMRMVVPGDRVTMSVELVQPIAIEKGMRFAIREGGRTVGAGVVSNVV 409          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_SYNS9 (Elongation factor Tu OS=Synechococcus sp. (strain CC9902) GN=tuf PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.518e-31
Identity = 62/91 (68.13%), Postives = 75/91 (82.42%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVLKKEEGGRH+PFFAGYRPQFY+RTTDVTG++++   +     +MVMPGD ++M  ELI PVA E GMRFAIREGG+T+GAGV+  IIE
Sbjct:  309 VYVLKKEEGGRHTPFFAGYRPQFYIRTTDVTGQITAFTAEDGSNVEMVMPGDNIQMTGELICPVAMEMGMRFAIREGGRTIGAGVVSKIIE 399          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_SYNP2 (Elongation factor Tu OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=tuf PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.518e-31
Identity = 61/91 (67.03%), Postives = 74/91 (81.32%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVL KEEGGRH+PFF  YRPQFY+RTTDVTG +S+   D    ++MVMPGDR+KM VELI P+A EQGMRFAIREGG+T+GAG +  I++
Sbjct:  319 VYVLTKEEGGRHTPFFPNYRPQFYVRTTDVTGTISAFTADDGSSAEMVMPGDRIKMTVELINPIAIEQGMRFAIREGGRTIGAGTVSKILK 409          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_RHDSA (Elongation factor Tu, chloroplastic OS=Rhodomonas salina GN=tufA PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.518e-31
Identity = 61/91 (67.03%), Postives = 74/91 (81.32%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVL KEEGGRH+PFF GYRPQFY+RTTDVTG ++    D    ++MVMPGDR+KM  +LI P+A E+GMRFAIREGG+TVGAGV+  I+E
Sbjct:  319 VYVLTKEEGGRHTPFFTGYRPQFYVRTTDVTGTIAQFTADDGSAAEMVMPGDRIKMTAQLIHPIAIEKGMRFAIREGGRTVGAGVVSKILE 409          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_CYAPA (Elongation factor Tu, cyanelle OS=Cyanophora paradoxa GN=tufA PE=3 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 3.289e-31
Identity = 59/91 (64.84%), Postives = 75/91 (82.42%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVL K+EGGRH+PFF+GYRPQFY+RTTDVTG + +   D    ++MVMPGDR+KM V L+ P+A EQGMRFAIREGG+T+GAGV+  I++
Sbjct:  319 VYVLTKDEGGRHTPFFSGYRPQFYVRTTDVTGSIDAFTADDGSNAEMVMPGDRIKMTVSLVHPIAIEQGMRFAIREGGRTIGAGVVSKILK 409          
The following BLAST results are available for this feature:
BLAST of DN617892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_GUITH5.075e-3268.13Elongation factor Tu, chloroplastic OS=Guillardia ... [more]
EFTU_CYAME5.075e-3270.33Elongation factor Tu, chloroplastic OS=Cyanidiosch... [more]
EFTU_SYNSC6.628e-3269.23Elongation factor Tu OS=Synechococcus sp. (strain ... [more]
EFTU_SYNR36.628e-3270.33Elongation factor Tu OS=Synechococcus sp. (strain ... [more]
EFTU_GRATL6.628e-3268.13Elongation factor Tu, chloroplastic OS=Gracilaria ... [more]
EFTU_BIGNA8.656e-3267.03Elongation factor Tu, chloroplastic OS=Bigelowiell... [more]
EFTU_SYNS92.518e-3168.13Elongation factor Tu OS=Synechococcus sp. (strain ... [more]
EFTU_SYNP22.518e-3167.03Elongation factor Tu OS=Synechococcus sp. (strain ... [more]
EFTU_RHDSA2.518e-3167.03Elongation factor Tu, chloroplastic OS=Rhodomonas ... [more]
EFTU_CYAPA3.289e-3164.84Elongation factor Tu, cyanelle OS=Cyanophora parad... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01N07_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001N07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617892 ID=DN617892; Name=DN617892; organism=Citrus sinensis; type=EST; length=535bp
CCACGAGGCAAATCAACATTGAGCTGAAGCAACTGAGGAAAAGTGAGTCA
TATTGAATTATCACATGAACATTTTCCAACTAGACTTGACATGAGTTCAA
TGCAAAATAAGAACAAAACTGCAAATTATATGACATTAGGTTCTGGAAGT
TCCTAGAATGGTGAAACTAATTCCATAAAAACTTAAGAATATGAAGTTTA
ACACCGCTCAAAAAAGTAAAAGATAATCCACTGCCCATGAAAGTTCCTAG
TACTATCATTCAATGATGGACTGAATAACACCAGCTCCAACAGTCTTTCC
TCCTTCTCTGATGGCAAATCTCATCCCTTGCTCACAAGCCACTGGCATAA
TAAGCTCCACAACCATCTTGACACGGTCGCCAGGCATAACCATCTTGGAC
TCCTCGTCCTTGTCGTTCATAATAGAAGACACCCTTCCAGTCACATCAGT
GGTCCTCATGTAAAATTGAGGCCTGTAACCCGCAAAGAAAGGTGAGTGCC
TACCACCTTCTTCCTTCTTCAACACATACACAATG
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