DN617892

Overview
NameDN617892
Unique NameDN617892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length535
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_DESDA (Elongation factor Tu OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=tuf PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.430e-26
Identity = 58/91 (63.74%), Postives = 69/91 (75.82%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVL KEEGGRH+PFF GYRPQFY RTTD+TG +S       E  +MVMPGD  + +VELI P+A E G+RFAIREGG+TVG+GV+  I E
Sbjct:  312 VYVLSKEEGGRHTPFFTGYRPQFYFRTTDITGVIS-----LPEGVEMVMPGDNSQFIVELIAPIAMEAGLRFAIREGGRTVGSGVVTEINE 397          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_CHLTE (Elongation factor Tu OS=Chlorobium tepidum GN=tuf PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.430e-26
Identity = 58/91 (63.74%), Postives = 70/91 (76.92%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VY+LKKEEGGRH+PFF GYRPQFY RTTDVTG V+       E  +MVMPGD + + VELI P+A E+ +RFAIREGG+TVGAG +  I+E
Sbjct:  308 VYILKKEEGGRHTPFFNGYRPQFYFRTTDVTGSVT-----LPEGVEMVMPGDNLSIDVELIAPIAMEESLRFAIREGGRTVGAGSVTKIVE 393          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_CHLP8 (Elongation factor Tu OS=Chlorobaculum parvum (strain NCIB 8327) GN=tuf PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.430e-26
Identity = 58/91 (63.74%), Postives = 70/91 (76.92%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VY+LKKEEGGRH+PFF GYRPQFY RTTDVTG V+       E  +MVMPGD + + VELI P+A E+ +RFAIREGG+TVGAG +  I+E
Sbjct:  308 VYILKKEEGGRHTPFFNGYRPQFYFRTTDVTGSVT-----LPEGVEMVMPGDNLSVDVELIAPIAMEESLRFAIREGGRTVGAGSVTKIVE 393          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_CHLAB (Elongation factor Tu OS=Chlamydophila abortus GN=tuf PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.430e-26
Identity = 59/90 (65.56%), Postives = 69/90 (76.67%), Query Frame = -2
Query:  262 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 531
            VY+L+KEEGGRH PFF GYRPQF+ RTTDVTG V+       E  +MVMPGD V+  V+LI PVA E+GMRFAIREGG+T+GAG I  II
Sbjct:  309 VYILQKEEGGRHKPFFTGYRPQFFFRTTDVTGVVTL-----PEGVEMVMPGDNVEFDVQLISPVALEEGMRFAIREGGRTIGAGTISKII 393          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_CAMFF (Elongation factor Tu OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=tuf PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.430e-26
Identity = 58/90 (64.44%), Postives = 70/90 (77.78%), Query Frame = -2
Query:  262 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 531
            VY+L KEEGGRH+PFF  YRPQFY+RTTDVTG ++       E ++MVMPGD +K+ VELI PVA E G RFAIREGG+TVG+GV+  II
Sbjct:  314 VYILTKEEGGRHTPFFNNYRPQFYVRTTDVTGSITL-----PEGTEMVMPGDNLKITVELINPVALEDGTRFAIREGGRTVGSGVVSKII 398          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU2_YERPS (Elongation factor Tu 2 OS=Yersinia pseudotuberculosis GN=tuf2 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.430e-26
Identity = 55/90 (61.11%), Postives = 69/90 (76.67%), Query Frame = -2
Query:  262 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 531
            VY+L K+EGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD + M+V LI P+A + G+RFAIREGG+TVGAGV+  +I
Sbjct:  309 VYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNINMIVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVI 393          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU2_YERPN (Elongation factor Tu 2 OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.430e-26
Identity = 55/90 (61.11%), Postives = 69/90 (76.67%), Query Frame = -2
Query:  262 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 531
            VY+L K+EGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD + M+V LI P+A + G+RFAIREGG+TVGAGV+  +I
Sbjct:  309 VYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNINMIVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVI 393          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU2_YERP3 (Elongation factor Tu 2 OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.430e-26
Identity = 55/90 (61.11%), Postives = 69/90 (76.67%), Query Frame = -2
Query:  262 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 531
            VY+L K+EGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD + M+V LI P+A + G+RFAIREGG+TVGAGV+  +I
Sbjct:  309 VYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNINMIVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVI 393          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU2_METFK (Elongation factor Tu 2 OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.430e-26
Identity = 58/91 (63.74%), Postives = 70/91 (76.92%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            +YVL K+EGGRH+PFF GYRPQFY RTTDVTG V     +    ++MVMPGD V + V LI P+A E+G+RFAIREGG+TVGAGV+  IIE
Sbjct:  311 IYVLGKDEGGRHTPFFNGYRPQFYFRTTDVTGAV-----ELPAGTEMVMPGDNVSISVSLIAPIAMEEGLRFAIREGGRTVGAGVVAKIIE 396          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU1_YERPP (Elongation factor Tu 1 OS=Yersinia pestis (strain Pestoides F) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.430e-26
Identity = 55/90 (61.11%), Postives = 69/90 (76.67%), Query Frame = -2
Query:  262 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 531
            VY+L K+EGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD + M+V LI P+A + G+RFAIREGG+TVGAGV+  +I
Sbjct:  309 VYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNINMIVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVI 393          
The following BLAST results are available for this feature:
BLAST of DN617892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_DESDA1.430e-2663.74Elongation factor Tu OS=Desulfovibrio desulfurican... [more]
EFTU_CHLTE1.430e-2663.74Elongation factor Tu OS=Chlorobium tepidum GN=tuf ... [more]
EFTU_CHLP81.430e-2663.74Elongation factor Tu OS=Chlorobaculum parvum (stra... [more]
EFTU_CHLAB1.430e-2665.56Elongation factor Tu OS=Chlamydophila abortus GN=t... [more]
EFTU_CAMFF1.430e-2664.44Elongation factor Tu OS=Campylobacter fetus subsp.... [more]
EFTU2_YERPS1.430e-2661.11Elongation factor Tu 2 OS=Yersinia pseudotuberculo... [more]
EFTU2_YERPN1.430e-2661.11Elongation factor Tu 2 OS=Yersinia pestis bv. Anti... [more]
EFTU2_YERP31.430e-2661.11Elongation factor Tu 2 OS=Yersinia pseudotuberculo... [more]
EFTU2_METFK1.430e-2663.74Elongation factor Tu 2 OS=Methylobacillus flagella... [more]
EFTU1_YERPP1.430e-2661.11Elongation factor Tu 1 OS=Yersinia pestis (strain ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01N07_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001N07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617892 ID=DN617892; Name=DN617892; organism=Citrus sinensis; type=EST; length=535bp
CCACGAGGCAAATCAACATTGAGCTGAAGCAACTGAGGAAAAGTGAGTCA
TATTGAATTATCACATGAACATTTTCCAACTAGACTTGACATGAGTTCAA
TGCAAAATAAGAACAAAACTGCAAATTATATGACATTAGGTTCTGGAAGT
TCCTAGAATGGTGAAACTAATTCCATAAAAACTTAAGAATATGAAGTTTA
ACACCGCTCAAAAAAGTAAAAGATAATCCACTGCCCATGAAAGTTCCTAG
TACTATCATTCAATGATGGACTGAATAACACCAGCTCCAACAGTCTTTCC
TCCTTCTCTGATGGCAAATCTCATCCCTTGCTCACAAGCCACTGGCATAA
TAAGCTCCACAACCATCTTGACACGGTCGCCAGGCATAACCATCTTGGAC
TCCTCGTCCTTGTCGTTCATAATAGAAGACACCCTTCCAGTCACATCAGT
GGTCCTCATGTAAAATTGAGGCCTGTAACCCGCAAAGAAAGGTGAGTGCC
TACCACCTTCTTCCTTCTTCAACACATACACAATG
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