DN617892

Overview
NameDN617892
Unique NameDN617892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length535
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_OLICO (Elongation factor Tu OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=tuf PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.186e-26
Identity = 58/90 (64.44%), Postives = 69/90 (76.67%), Query Frame = -2
Query:  259 YVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 528
            Y+L KEEGGRH+PFF  YRPQFY RTTDVTG V        E ++MVMPGD + M V LI+P+A E+ +RFAIREGG+TVGAGV+ SIIE
Sbjct:  312 YILTKEEGGRHTPFFTNYRPQFYFRTTDVTGVVHL-----PEGTEMVMPGDNIAMEVHLIVPIAMEEKLRFAIREGGRTVGAGVVASIIE 396          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_LYSSC (Elongation factor Tu OS=Lysinibacillus sphaericus (strain C3-41) GN=tuf PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.186e-26
Identity = 57/89 (64.04%), Postives = 70/89 (78.65%), Query Frame = -2
Query:  265 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSI 531
            VYVL KEEGGRH+PFF+ YRPQFY RTTDVTG     + +  E  +MVMPGD ++M VELI P+A E+G +F+IREGG+TVGAGV+ SI
Sbjct:  310 VYVLSKEEGGRHTPFFSNYRPQFYFRTTDVTG-----ICNLPEGVEMVMPGDNIEMTVELIAPIALEEGTKFSIREGGRTVGAGVVASI 393          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_FRASN (Elongation factor Tu OS=Frankia sp. (strain EAN1pec) GN=tuf PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.186e-26
Identity = 56/91 (61.54%), Postives = 70/91 (76.92%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VY+L K+EGGRH+PFF  YRPQFY RTTDVTG V+       E ++MVMPGD  +M VELI P+A E+G+RFAIREGG+TVGAG +  +I+
Sbjct:  312 VYILNKDEGGRHTPFFKNYRPQFYFRTTDVTGVVTL-----PEGTEMVMPGDNTEMTVELIQPIAMEEGLRFAIREGGRTVGAGQVLKVIK 397          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_CHLPD (Elongation factor Tu OS=Chlorobium phaeobacteroides (strain DSM 266) GN=tuf PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.186e-26
Identity = 57/91 (62.64%), Postives = 71/91 (78.02%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VY+L+KEEGGRH+PFF GYRPQFY RTTDVTG V+       E  +MVMPGD + + VELI+P+A ++ +RFAIREGG+TVGAG +  IIE
Sbjct:  308 VYILRKEEGGRHTPFFNGYRPQFYFRTTDVTGSVT-----LPEGVEMVMPGDNLSVDVELIVPIAMDENLRFAIREGGRTVGAGSVTKIIE 393          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_CHLPB (Elongation factor Tu OS=Chlorobium phaeobacteroides (strain BS1) GN=tuf PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.186e-26
Identity = 57/91 (62.64%), Postives = 70/91 (76.92%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VY+LKKEEGGRH+PFF  YRPQFY RTTDVTG V+       E  +MVMPGD + + VELI+P+A ++ +RFAIREGG+TVGAG +  IIE
Sbjct:  308 VYILKKEEGGRHTPFFNNYRPQFYFRTTDVTGAVT-----LPEGVEMVMPGDNLSIEVELIVPIAMDENLRFAIREGGRTVGAGTVTQIIE 393          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_BRASO (Elongation factor Tu OS=Bradyrhizobium sp. (strain ORS278) GN=tuf PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.186e-26
Identity = 58/90 (64.44%), Postives = 69/90 (76.67%), Query Frame = -2
Query:  259 YVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 528
            Y+L KEEGGRH+PFF  YRPQFY RTTDVTG V        E ++MVMPGD + M V LI+P+A E+ +RFAIREGG+TVGAGV+ SIIE
Sbjct:  312 YILTKEEGGRHTPFFTNYRPQFYFRTTDVTGVVHL-----PEGTEMVMPGDNIAMEVHLIVPIAMEEKLRFAIREGGRTVGAGVVASIIE 396          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_BRASB (Elongation factor Tu OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=tuf PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.186e-26
Identity = 58/90 (64.44%), Postives = 69/90 (76.67%), Query Frame = -2
Query:  259 YVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 528
            Y+L KEEGGRH+PFF  YRPQFY RTTDVTG V        E ++MVMPGD + M V LI+P+A E+ +RFAIREGG+TVGAGV+ SIIE
Sbjct:  312 YILTKEEGGRHTPFFTNYRPQFYFRTTDVTGVVHL-----PEGTEMVMPGDNIAMEVHLIVPIAMEEKLRFAIREGGRTVGAGVVASIIE 396          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_BRAJA (Elongation factor Tu OS=Bradyrhizobium japonicum GN=tuf PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.186e-26
Identity = 58/90 (64.44%), Postives = 69/90 (76.67%), Query Frame = -2
Query:  259 YVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 528
            Y+L KEEGGRH+PFF  YRPQFY RTTDVTG V        E ++MVMPGD + M V LI+P+A E+ +RFAIREGG+TVGAGV+ SIIE
Sbjct:  312 YILTKEEGGRHTPFFTNYRPQFYFRTTDVTGVVHL-----PEGTEMVMPGDNIAMEVHLIVPIAMEEKLRFAIREGGRTVGAGVVASIIE 396          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_BACSK (Elongation factor Tu OS=Bacillus clausii (strain KSM-K16) GN=tuf PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.186e-26
Identity = 57/91 (62.64%), Postives = 70/91 (76.92%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVL K+EGGRH+PFF+ YRPQFY RTTDVTG V        E ++MVMPGD  +M VELI P+A E+G RF+IREGG+TVG+GV+ +I E
Sbjct:  311 VYVLSKDEGGRHTPFFSNYRPQFYFRTTDVTGVVHL-----PEGTEMVMPGDNTEMTVELIAPIAIEEGTRFSIREGGRTVGSGVVSTITE 396          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_BACP2 (Elongation factor Tu OS=Bacillus pumilus (strain SAFR-032) GN=tuf PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.186e-26
Identity = 59/91 (64.84%), Postives = 70/91 (76.92%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVL KEEGGRH+PFFA YRPQFY RTTDVTG V        E ++MVMPGD  +M VELI  +A E+G RF+IREGG+TVG+GV+ SII+
Sbjct:  311 VYVLSKEEGGRHTPFFANYRPQFYFRTTDVTGIV-----HLPEGTEMVMPGDNTEMEVELISTIAIEEGTRFSIREGGRTVGSGVVSSIIK 396          
The following BLAST results are available for this feature:
BLAST of DN617892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_OLICO3.186e-2664.44Elongation factor Tu OS=Oligotropha carboxidovoran... [more]
EFTU_LYSSC3.186e-2664.04Elongation factor Tu OS=Lysinibacillus sphaericus ... [more]
EFTU_FRASN3.186e-2661.54Elongation factor Tu OS=Frankia sp. (strain EAN1pe... [more]
EFTU_CHLPD3.186e-2662.64Elongation factor Tu OS=Chlorobium phaeobacteroide... [more]
EFTU_CHLPB3.186e-2662.64Elongation factor Tu OS=Chlorobium phaeobacteroide... [more]
EFTU_BRASO3.186e-2664.44Elongation factor Tu OS=Bradyrhizobium sp. (strain... [more]
EFTU_BRASB3.186e-2664.44Elongation factor Tu OS=Bradyrhizobium sp. (strain... [more]
EFTU_BRAJA3.186e-2664.44Elongation factor Tu OS=Bradyrhizobium japonicum G... [more]
EFTU_BACSK3.186e-2662.64Elongation factor Tu OS=Bacillus clausii (strain K... [more]
EFTU_BACP23.186e-2664.84Elongation factor Tu OS=Bacillus pumilus (strain S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01N07_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001N07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617892 ID=DN617892; Name=DN617892; organism=Citrus sinensis; type=EST; length=535bp
CCACGAGGCAAATCAACATTGAGCTGAAGCAACTGAGGAAAAGTGAGTCA
TATTGAATTATCACATGAACATTTTCCAACTAGACTTGACATGAGTTCAA
TGCAAAATAAGAACAAAACTGCAAATTATATGACATTAGGTTCTGGAAGT
TCCTAGAATGGTGAAACTAATTCCATAAAAACTTAAGAATATGAAGTTTA
ACACCGCTCAAAAAAGTAAAAGATAATCCACTGCCCATGAAAGTTCCTAG
TACTATCATTCAATGATGGACTGAATAACACCAGCTCCAACAGTCTTTCC
TCCTTCTCTGATGGCAAATCTCATCCCTTGCTCACAAGCCACTGGCATAA
TAAGCTCCACAACCATCTTGACACGGTCGCCAGGCATAACCATCTTGGAC
TCCTCGTCCTTGTCGTTCATAATAGAAGACACCCTTCCAGTCACATCAGT
GGTCCTCATGTAAAATTGAGGCCTGTAACCCGCAAAGAAAGGTGAGTGCC
TACCACCTTCTTCCTTCTTCAACACATACACAATG
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