DN617892

Overview
NameDN617892
Unique NameDN617892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length535
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_AZOC5 (Elongation factor Tu OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.186e-26
Identity = 57/90 (63.33%), Postives = 71/90 (78.89%), Query Frame = -2
Query:  259 YVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 528
            Y+L KEEGGRH+PFF  YRPQFY RTTDVTG V+       E ++MVMPGD + + V+LI+P+A E+ +RFAIREGG+TVGAGV+ SIIE
Sbjct:  313 YILTKEEGGRHTPFFTNYRPQFYFRTTDVTGVVTL-----PEGTEMVMPGDNISVDVQLIVPIAMEEKLRFAIREGGRTVGAGVVASIIE 397          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_ANOFW (Elongation factor Tu OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=tuf PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.186e-26
Identity = 57/91 (62.64%), Postives = 69/91 (75.82%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVL KEEGGRH+PFF+ YRPQFY RTTDVTG +        E  +MVMPGD ++M VELI P+A E+G +F+IREGG+TVGAG +  IIE
Sbjct:  310 VYVLTKEEGGRHTPFFSNYRPQFYFRTTDVTGIIQL-----PEGVEMVMPGDNIEMTVELIAPIAIEEGTKFSIREGGRTVGAGSVSEIIE 395          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU2_RHOPS (Elongation factor Tu 2 OS=Rhodopseudomonas palustris (strain BisB5) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.186e-26
Identity = 58/90 (64.44%), Postives = 69/90 (76.67%), Query Frame = -2
Query:  259 YVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 528
            Y+L KEEGGRH+PFF  YRPQFY RTTDVTG V        E ++MVMPGD + M V LI+P+A E+ +RFAIREGG+TVGAGV+ SIIE
Sbjct:  312 YILTKEEGGRHTPFFTNYRPQFYFRTTDVTGVVHL-----PEGTEMVMPGDNIAMEVHLIVPIAMEEKLRFAIREGGRTVGAGVVASIIE 396          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU2_NITEC (Elongation factor Tu 2 OS=Nitrosomonas eutropha (strain C91) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.186e-26
Identity = 56/91 (61.54%), Postives = 68/91 (74.73%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            +YVL KEEGGRH+PFFAGYRPQFY RTTDVTG +     +     +MVMPGD + + V LI P+A   G+RFAIREGG+TVGAGV+  +IE
Sbjct:  311 IYVLSKEEGGRHTPFFAGYRPQFYFRTTDVTGSI-----ELPAGVEMVMPGDNISVNVNLIAPIAMSDGLRFAIREGGRTVGAGVVAKVIE 396          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU1_RHOPS (Elongation factor Tu 1 OS=Rhodopseudomonas palustris (strain BisB5) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.186e-26
Identity = 58/90 (64.44%), Postives = 69/90 (76.67%), Query Frame = -2
Query:  259 YVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 528
            Y+L KEEGGRH+PFF  YRPQFY RTTDVTG V        E ++MVMPGD + M V LI+P+A E+ +RFAIREGG+TVGAGV+ SIIE
Sbjct:  312 YILTKEEGGRHTPFFTNYRPQFYFRTTDVTGVVHL-----PEGTEMVMPGDNIAMEVHLIVPIAMEEKLRFAIREGGRTVGAGVVASIIE 396          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_RALEJ (Elongation factor Tu OS=Ralstonia eutropha (strain JMP134) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 4.161e-26
Identity = 54/91 (59.34%), Postives = 70/91 (76.92%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VY+L K+EGGRH+PFF  YRPQFY RTTDVTG +     +   + +MVMPGD V + V+LI P+A E+G+RFAIREGG+TVGAGV+  I++
Sbjct:  311 VYILSKDEGGRHTPFFNNYRPQFYFRTTDVTGSI-----ELPADKEMVMPGDNVSITVKLIAPIAMEEGLRFAIREGGRTVGAGVVAKILD 396          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_PSYA2 (Elongation factor Tu OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 4.161e-26
Identity = 56/89 (62.92%), Postives = 70/89 (78.65%), Query Frame = -2
Query:  265 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSI 531
            VYVL KEEGGRH+PF  GYRPQFY RTTDVTG +        + ++MVMPGD V+M VELI P+A ++G+RFAIREGG+TVGAGV+ ++
Sbjct:  311 VYVLSKEEGGRHTPFLNGYRPQFYFRTTDVTGAIQL-----QDGTEMVMPGDNVEMGVELIHPIAMDKGLRFAIREGGRTVGAGVVANV 394          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_POLSQ (Elongation factor Tu OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 4.161e-26
Identity = 59/90 (65.56%), Postives = 71/90 (78.89%), Query Frame = -2
Query:  262 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 531
            VY+L K+EGGRH+PFF  YRPQFY RTTDVTG   SI   KD+E  MVMPGD V + V+LI P+A E+G+RFAIREGG+TVGAGV+  I+
Sbjct:  311 VYILGKDEGGRHTPFFNNYRPQFYFRTTDVTG---SIELPKDKE--MVMPGDNVTITVKLIAPIAMEEGLRFAIREGGRTVGAGVVAKIL 395          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_FUSNN (Elongation factor Tu OS=Fusobacterium nucleatum subsp. nucleatum GN=tuf PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 4.161e-26
Identity = 56/89 (62.92%), Postives = 68/89 (76.40%), Query Frame = -2
Query:  265 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSI 531
            VYVL K+EGGRH+PFF GYRPQFY RTTD+TG V+       +  +MVMPGD + M VELI P+A EQG+RFAIREGG+TV +GV+  I
Sbjct:  309 VYVLTKDEGGRHTPFFTGYRPQFYFRTTDITGAVT-----LPDGVEMVMPGDNITMTVELIHPIAMEQGLRFAIREGGRTVASGVVSEI 392          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_FRASC (Elongation factor Tu OS=Frankia sp. (strain CcI3) GN=tuf PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 4.161e-26
Identity = 55/91 (60.44%), Postives = 70/91 (76.92%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VY+L K+EGGRH+PFF  YRPQFY RTTDVTG V+       E ++MVMPGD  +M VELI P+A E+G+RFAIREGG+TVGAG +  +++
Sbjct:  312 VYILNKDEGGRHTPFFKNYRPQFYFRTTDVTGVVTL-----PEGTEMVMPGDNTEMTVELIQPIAMEEGLRFAIREGGRTVGAGQVTKVLK 397          
The following BLAST results are available for this feature:
BLAST of DN617892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_AZOC53.186e-2663.33Elongation factor Tu OS=Azorhizobium caulinodans (... [more]
EFTU_ANOFW3.186e-2662.64Elongation factor Tu OS=Anoxybacillus flavithermus... [more]
EFTU2_RHOPS3.186e-2664.44Elongation factor Tu 2 OS=Rhodopseudomonas palustr... [more]
EFTU2_NITEC3.186e-2661.54Elongation factor Tu 2 OS=Nitrosomonas eutropha (s... [more]
EFTU1_RHOPS3.186e-2664.44Elongation factor Tu 1 OS=Rhodopseudomonas palustr... [more]
EFTU_RALEJ4.161e-2659.34Elongation factor Tu OS=Ralstonia eutropha (strain... [more]
EFTU_PSYA24.161e-2662.92Elongation factor Tu OS=Psychrobacter arcticus (st... [more]
EFTU_POLSQ4.161e-2665.56Elongation factor Tu OS=Polynucleobacter sp. (stra... [more]
EFTU_FUSNN4.161e-2662.92Elongation factor Tu OS=Fusobacterium nucleatum su... [more]
EFTU_FRASC4.161e-2660.44Elongation factor Tu OS=Frankia sp. (strain CcI3) ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01N07_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001N07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617892 ID=DN617892; Name=DN617892; organism=Citrus sinensis; type=EST; length=535bp
CCACGAGGCAAATCAACATTGAGCTGAAGCAACTGAGGAAAAGTGAGTCA
TATTGAATTATCACATGAACATTTTCCAACTAGACTTGACATGAGTTCAA
TGCAAAATAAGAACAAAACTGCAAATTATATGACATTAGGTTCTGGAAGT
TCCTAGAATGGTGAAACTAATTCCATAAAAACTTAAGAATATGAAGTTTA
ACACCGCTCAAAAAAGTAAAAGATAATCCACTGCCCATGAAAGTTCCTAG
TACTATCATTCAATGATGGACTGAATAACACCAGCTCCAACAGTCTTTCC
TCCTTCTCTGATGGCAAATCTCATCCCTTGCTCACAAGCCACTGGCATAA
TAAGCTCCACAACCATCTTGACACGGTCGCCAGGCATAACCATCTTGGAC
TCCTCGTCCTTGTCGTTCATAATAGAAGACACCCTTCCAGTCACATCAGT
GGTCCTCATGTAAAATTGAGGCCTGTAACCCGCAAAGAAAGGTGAGTGCC
TACCACCTTCTTCCTTCTTCAACACATACACAATG
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