DN617892

Overview
NameDN617892
Unique NameDN617892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length535
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6850 contig Csv1_Contig6850:708..1242. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_CYAP8 (Elongation factor Tu OS=Cyanothece sp. (strain PCC 8801) GN=tuf PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.289e-31
Identity = 61/91 (67.03%), Postives = 75/91 (82.42%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVL KEEGGRH+PFF  Y+PQFY+RTTDVTG +    +D+ E  +MVMPGDR+KM VELI P+A EQGMRFAIREGG+T+GAGV+  I++
Sbjct:  319 VYVLTKEEGGRHTPFFKNYKPQFYVRTTDVTGSIVDYTSDEGETVEMVMPGDRIKMTVELINPIAIEQGMRFAIREGGRTIGAGVVSKILK 409          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_SYNS3 (Elongation factor Tu OS=Synechococcus sp. (strain CC9311) GN=tuf PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 4.296e-31
Identity = 62/91 (68.13%), Postives = 75/91 (82.42%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVLKKEEGGRH+PFFAGYRPQFY+RTTDVTG++++   +     +MVMPGD ++M  ELI PVA E GMRFAIREGG+T+GAGV+  IIE
Sbjct:  309 VYVLKKEEGGRHTPFFAGYRPQFYIRTTDVTGQITAFTAEDGSNVEMVMPGDNIQMTGELICPVAMELGMRFAIREGGRTIGAGVVSKIIE 399          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_PROWI (Elongation factor Tu, plastid OS=Prototheca wickerhamii GN=tufA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 4.296e-31
Identity = 62/91 (68.13%), Postives = 74/91 (81.32%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVL KEEGGR +PFF+GYRPQFY+RTTDVTG++ S   D  E  KMV+PGDR+KM  ELI P+A E+ MRFAIREGGKTVGAGV+  I++
Sbjct:  319 VYVLNKEEGGRDTPFFSGYRPQFYVRTTDVTGKIESFCTDAGEPIKMVLPGDRIKMKAELIQPIAIERNMRFAIREGGKTVGAGVVGKILK 409          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_ANAVT (Elongation factor Tu OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=tuf PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 5.611e-31
Identity = 60/91 (65.93%), Postives = 77/91 (84.62%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVL ++EGGR +PFFAGYRPQFY+RTTDVTG + +  +D+ E  +MVMPGDR+K+ VELI P+A EQGMRFAIREGG+T+GAGV+  I++
Sbjct:  319 VYVLTEKEGGRKTPFFAGYRPQFYVRTTDVTGTIKAFTSDEGEAVEMVMPGDRIKVTVELINPIAIEQGMRFAIREGGRTIGAGVVSKIVK 409          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_ANASP (Elongation factor Tu OS=Anabaena sp. (strain PCC 7120) GN=tuf PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 5.611e-31
Identity = 60/91 (65.93%), Postives = 77/91 (84.62%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVL ++EGGR +PFFAGYRPQFY+RTTDVTG + +  +D+ E  +MVMPGDR+K+ VELI P+A EQGMRFAIREGG+T+GAGV+  I++
Sbjct:  319 VYVLTEKEGGRKTPFFAGYRPQFYVRTTDVTGTIKAFTSDEGETVEMVMPGDRIKVTVELINPIAIEQGMRFAIREGGRTIGAGVVSKIVK 409          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_PSEAK (Elongation factor Tu, chloroplastic OS=Pseudendoclonium akinetum GN=tufA PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 7.328e-31
Identity = 61/91 (67.03%), Postives = 74/91 (81.32%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VY+L KEEGGRH+PFF GYRPQFY+RTTDVTG++ S   D   E+ M   GDR+KMVVELI P+A E GMRFAIREGG+TVGAGV+ +I++
Sbjct:  319 VYILTKEEGGRHTPFFPGYRPQFYVRTTDVTGKIESFTADDGSEALMATSGDRLKMVVELIQPIAVENGMRFAIREGGRTVGAGVVSTILK 409          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_ODOSI (Elongation factor Tu, chloroplastic OS=Odontella sinensis GN=tufA PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 7.328e-31
Identity = 61/91 (67.03%), Postives = 73/91 (80.22%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVL K+EGGRH+PFF GYRPQFY+RTTDVTG ++    D     +MVMPGDR+KM  ELI PVA E+GMRFAIREGG+T+GAGV+  II+
Sbjct:  319 VYVLTKDEGGRHTPFFTGYRPQFYVRTTDVTGAITQFTADDGSIVEMVMPGDRIKMTAELIYPVAIEEGMRFAIREGGRTIGAGVVSKIIQ 409          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_EMIHU (Elongation factor Tu, chloroplastic OS=Emiliania huxleyi GN=tufA PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 7.328e-31
Identity = 61/91 (67.03%), Postives = 72/91 (79.12%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVL K+EGGRH+PFF GYRPQFY+RT DVTG +     D    ++MVMPGDR+KM  ELI P+A EQGMRFAIREGG+TVGAGV+  I+E
Sbjct:  317 VYVLGKDEGGRHTPFFTGYRPQFYVRTIDVTGTIVQFTGDDGSAAEMVMPGDRIKMTAELINPIAIEQGMRFAIREGGRTVGAGVVSKILE 407          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_CHAVU (Elongation factor Tu, chloroplastic OS=Chara vulgaris GN=tufA PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 7.328e-31
Identity = 59/91 (64.84%), Postives = 77/91 (84.62%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VY+L+KEEGGRHSPFFAGYRPQF++RT DVTG + +   D  ++++MVMPGDRVKM+V LI P+A E+ MRFAIREGG+T+GAGV+  I++
Sbjct:  320 VYILRKEEGGRHSPFFAGYRPQFFVRTADVTGVIEAFEYDNGDKTRMVMPGDRVKMIVNLICPIAIEKKMRFAIREGGRTIGAGVVLQILD 410          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_THAPS (Elongation factor Tu, chloroplastic OS=Thalassiosira pseudonana GN=tufA PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 9.570e-31
Identity = 61/91 (67.03%), Postives = 72/91 (79.12%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVL KEEGGRH+PFF GYRPQFY+RTTDVTG +     D     +MVMPGDR+KM  ELI PVA E+GMRFAIREGG+T+GAGV+  I++
Sbjct:  319 VYVLTKEEGGRHTPFFTGYRPQFYVRTTDVTGSIEQFTADDGTIVEMVMPGDRIKMTAELIYPVAIEEGMRFAIREGGRTIGAGVVSKIVK 409          
The following BLAST results are available for this feature:
BLAST of DN617892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_CYAP83.289e-3167.03Elongation factor Tu OS=Cyanothece sp. (strain PCC... [more]
EFTU_SYNS34.296e-3168.13Elongation factor Tu OS=Synechococcus sp. (strain ... [more]
EFTU_PROWI4.296e-3168.13Elongation factor Tu, plastid OS=Prototheca wicker... [more]
EFTU_ANAVT5.611e-3165.93Elongation factor Tu OS=Anabaena variabilis (strai... [more]
EFTU_ANASP5.611e-3165.93Elongation factor Tu OS=Anabaena sp. (strain PCC 7... [more]
EFTU_PSEAK7.328e-3167.03Elongation factor Tu, chloroplastic OS=Pseudendocl... [more]
EFTU_ODOSI7.328e-3167.03Elongation factor Tu, chloroplastic OS=Odontella s... [more]
EFTU_EMIHU7.328e-3167.03Elongation factor Tu, chloroplastic OS=Emiliania h... [more]
EFTU_CHAVU7.328e-3164.84Elongation factor Tu, chloroplastic OS=Chara vulga... [more]
EFTU_THAPS9.570e-3167.03Elongation factor Tu, chloroplastic OS=Thalassiosi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01N07_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001N07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617892 ID=DN617892; Name=DN617892; organism=Citrus sinensis; type=EST; length=535bp
CCACGAGGCAAATCAACATTGAGCTGAAGCAACTGAGGAAAAGTGAGTCA
TATTGAATTATCACATGAACATTTTCCAACTAGACTTGACATGAGTTCAA
TGCAAAATAAGAACAAAACTGCAAATTATATGACATTAGGTTCTGGAAGT
TCCTAGAATGGTGAAACTAATTCCATAAAAACTTAAGAATATGAAGTTTA
ACACCGCTCAAAAAAGTAAAAGATAATCCACTGCCCATGAAAGTTCCTAG
TACTATCATTCAATGATGGACTGAATAACACCAGCTCCAACAGTCTTTCC
TCCTTCTCTGATGGCAAATCTCATCCCTTGCTCACAAGCCACTGGCATAA
TAAGCTCCACAACCATCTTGACACGGTCGCCAGGCATAACCATCTTGGAC
TCCTCGTCCTTGTCGTTCATAATAGAAGACACCCTTCCAGTCACATCAGT
GGTCCTCATGTAAAATTGAGGCCTGTAACCCGCAAAGAAAGGTGAGTGCC
TACCACCTTCTTCCTTCTTCAACACATACACAATG
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