DN617892

Overview
NameDN617892
Unique NameDN617892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length535
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6850 contig Csv1_Contig6850:708..1242. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_HERAU (Elongation factor Tu OS=Herpetosiphon aurantiacus GN=tuf PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.382e-29
Identity = 62/90 (68.89%), Postives = 74/90 (82.22%), Query Frame = -2
Query:  262 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 531
            VYVLKKEEGGRHSPFF+GYRPQFY+RTTDVTG +        E  +MVMPGD ++M VELI+PVA EQG++FAIREGG+TVGAG++  II
Sbjct:  315 VYVLKKEEGGRHSPFFSGYRPQFYVRTTDVTGAIGL-----PEGVEMVMPGDNIQMTVELIVPVAIEQGLKFAIREGGRTVGAGIVPEII 399          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU2_ROSS1 (Elongation factor Tu 2 OS=Roseiflexus sp. (strain RS-1) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.382e-29
Identity = 61/91 (67.03%), Postives = 76/91 (83.52%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVLKKEEGGRH+PFF+GYRPQFY+RTTDVTG +        E  +MVMPGD ++M VELI+PVA E+G+RFAIREGG+TVGAGV+ +I++
Sbjct:  316 VYVLKKEEGGRHTPFFSGYRPQFYIRTTDVTGAIHL-----PEGVEMVMPGDNIEMTVELIVPVAIEEGLRFAIREGGRTVGAGVVSAIVD 401          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU1_ROSS1 (Elongation factor Tu 1 OS=Roseiflexus sp. (strain RS-1) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.382e-29
Identity = 61/91 (67.03%), Postives = 76/91 (83.52%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVLKKEEGGRH+PFF+GYRPQFY+RTTDVTG +        E  +MVMPGD ++M VELI+PVA E+G+RFAIREGG+TVGAGV+ +I++
Sbjct:  316 VYVLKKEEGGRHTPFFSGYRPQFYIRTTDVTGAIHL-----PEGVEMVMPGDNIEMTVELIVPVAIEEGLRFAIREGGRTVGAGVVSAIVD 401          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_CODFR (Elongation factor Tu, chloroplastic OS=Codium fragile GN=tufA PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.805e-29
Identity = 61/92 (66.30%), Postives = 75/92 (81.52%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDE-ESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VY+LKKEEGGRH+ FFAGYRPQFY+RTTDVTG + +     D  + +MVMPGDR++M VELI P+A E  MRFAIREGGKTVGAGV+ +I++
Sbjct:  318 VYILKKEEGGRHTSFFAGYRPQFYVRTTDVTGHIKTFQGKIDNTQIQMVMPGDRIQMEVELIRPIAIETRMRFAIREGGKTVGAGVVTTIVQ 409          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU2_ROSCS (Elongation factor Tu 2 OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.357e-29
Identity = 61/91 (67.03%), Postives = 76/91 (83.52%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVLKKEEGGRH+PFF GYRPQFY+RTTDVTG +S          +MVMPGD ++M+VELI+PVA E+G+RFAIREGG+TVGAGV+ +I++
Sbjct:  316 VYVLKKEEGGRHTPFFPGYRPQFYIRTTDVTGAISLPAG-----VEMVMPGDNIEMLVELIVPVAIEEGLRFAIREGGRTVGAGVVSAIVD 401          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU1_ROSCS (Elongation factor Tu 1 OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.357e-29
Identity = 61/91 (67.03%), Postives = 76/91 (83.52%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVLKKEEGGRH+PFF GYRPQFY+RTTDVTG +S          +MVMPGD ++M+VELI+PVA E+G+RFAIREGG+TVGAGV+ +I++
Sbjct:  316 VYVLKKEEGGRHTPFFPGYRPQFYIRTTDVTGAISLPAG-----VEMVMPGDNIEMLVELIVPVAIEEGLRFAIREGGRTVGAGVVSAIVD 401          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU2_ALKMQ (Elongation factor Tu 2 OS=Alkaliphilus metalliredigens (strain QYMF) GN=tuf2 PE=3 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 5.251e-29
Identity = 62/91 (68.13%), Postives = 72/91 (79.12%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVLKKEEGGRH+PFF GYRPQFY RTTDVTG +        E  +MVMPGD + M +ELI P+A E+G+RFAIREGG+TVGAGV+ SIIE
Sbjct:  312 VYVLKKEEGGRHTPFFDGYRPQFYFRTTDVTGSIKL-----PEGVEMVMPGDNITMEIELISPIATEEGLRFAIREGGRTVGAGVVASIIE 397          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU1_ALKMQ (Elongation factor Tu 1 OS=Alkaliphilus metalliredigens (strain QYMF) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 5.251e-29
Identity = 62/91 (68.13%), Postives = 72/91 (79.12%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVLKKEEGGRH+PFF GYRPQFY RTTDVTG +        E  +MVMPGD + M +ELI P+A E+G+RFAIREGG+TVGAGV+ SIIE
Sbjct:  312 VYVLKKEEGGRHTPFFDGYRPQFYFRTTDVTGSIKL-----PEGVEMVMPGDNITMEIELISPIATEEGLRFAIREGGRTVGAGVVASIIE 397          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU1_HALHL (Elongation factor Tu 1 OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 6.859e-29
Identity = 62/91 (68.13%), Postives = 72/91 (79.12%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVL K+EGGRH+PFF GYRPQFY RTTDVTG V+       E ++MVMPGD VKM V+LI P+A E G+RFAIREGG+TVGAGV+  IIE
Sbjct:  311 VYVLSKDEGGRHTPFFNGYRPQFYFRTTDVTGTVTL-----PEGTEMVMPGDNVKMTVQLIAPIAMEDGLRFAIREGGRTVGAGVVSKIIE 396          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_VIBPA (Elongation factor Tu OS=Vibrio parahaemolyticus GN=tufA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.170e-28
Identity = 61/91 (67.03%), Postives = 72/91 (79.12%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +S       E  +MVMPGD ++MVVELI P+A ++G+RFAIREGG+TVGAGV+  I E
Sbjct:  309 VYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGDISL-----PEGVEMVMPGDNIQMVVELIAPIAMDEGLRFAIREGGRTVGAGVVAKIFE 394          
The following BLAST results are available for this feature:
BLAST of DN617892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_HERAU1.382e-2968.89Elongation factor Tu OS=Herpetosiphon aurantiacus ... [more]
EFTU2_ROSS11.382e-2967.03Elongation factor Tu 2 OS=Roseiflexus sp. (strain ... [more]
EFTU1_ROSS11.382e-2967.03Elongation factor Tu 1 OS=Roseiflexus sp. (strain ... [more]
EFTU_CODFR1.805e-2966.30Elongation factor Tu, chloroplastic OS=Codium frag... [more]
EFTU2_ROSCS2.357e-2967.03Elongation factor Tu 2 OS=Roseiflexus castenholzii... [more]
EFTU1_ROSCS2.357e-2967.03Elongation factor Tu 1 OS=Roseiflexus castenholzii... [more]
EFTU2_ALKMQ5.251e-2968.13Elongation factor Tu 2 OS=Alkaliphilus metalliredi... [more]
EFTU1_ALKMQ5.251e-2968.13Elongation factor Tu 1 OS=Alkaliphilus metalliredi... [more]
EFTU1_HALHL6.859e-2968.13Elongation factor Tu 1 OS=Halorhodospira halophila... [more]
EFTU_VIBPA1.170e-2867.03Elongation factor Tu OS=Vibrio parahaemolyticus GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01N07_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001N07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617892 ID=DN617892; Name=DN617892; organism=Citrus sinensis; type=EST; length=535bp
CCACGAGGCAAATCAACATTGAGCTGAAGCAACTGAGGAAAAGTGAGTCA
TATTGAATTATCACATGAACATTTTCCAACTAGACTTGACATGAGTTCAA
TGCAAAATAAGAACAAAACTGCAAATTATATGACATTAGGTTCTGGAAGT
TCCTAGAATGGTGAAACTAATTCCATAAAAACTTAAGAATATGAAGTTTA
ACACCGCTCAAAAAAGTAAAAGATAATCCACTGCCCATGAAAGTTCCTAG
TACTATCATTCAATGATGGACTGAATAACACCAGCTCCAACAGTCTTTCC
TCCTTCTCTGATGGCAAATCTCATCCCTTGCTCACAAGCCACTGGCATAA
TAAGCTCCACAACCATCTTGACACGGTCGCCAGGCATAACCATCTTGGAC
TCCTCGTCCTTGTCGTTCATAATAGAAGACACCCTTCCAGTCACATCAGT
GGTCCTCATGTAAAATTGAGGCCTGTAACCCGCAAAGAAAGGTGAGTGCC
TACCACCTTCTTCCTTCTTCAACACATACACAATG
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