DN617892

Overview
NameDN617892
Unique NameDN617892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length535
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6850 contig Csv1_Contig6850:708..1242. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_ACTSZ (Elongation factor Tu OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.170e-28
Identity = 61/91 (67.03%), Postives = 72/91 (79.12%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD VKM V LI P+A +QG+RFAIREGG+TVGAGV+ S+I+
Sbjct:  309 VYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNVKMTVSLIHPIAMDQGLRFAIREGGRTVGAGVVASVIK 394          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_WIGBR (Elongation factor Tu OS=Wigglesworthia glossinidia brevipalpis GN=tuf PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.528e-28
Identity = 60/90 (66.67%), Postives = 73/90 (81.11%), Query Frame = -2
Query:  262 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 531
            VYVLKKEEGGRH+PFF GY+PQFY RTTDVTG V     +  + ++MVMPGD VKM+V+LI P+A + G+RFAIREGGKTVGAG++  II
Sbjct:  309 VYVLKKEEGGRHTPFFNGYKPQFYFRTTDVTGSV-----ELQKGTEMVMPGDNVKMLVKLISPIAMDDGLRFAIREGGKTVGAGIVSKII 393          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_PSEAE (Elongation factor Tu OS=Pseudomonas aeruginosa GN=tufA PE=3 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 1.528e-28
Identity = 62/91 (68.13%), Postives = 70/91 (76.92%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVL KEEGGRH+PFF GYRPQFY RTTDVTG       +  E  +MVMPGD +KMVV LI P+A E G+RFAIREGG+TVGAGV+  IIE
Sbjct:  312 VYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGNC-----ELPEGVEMVMPGDNIKMVVTLIAPIAMEDGLRFAIREGGRTVGAGVVAKIIE 397          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_PSEAB (Elongation factor Tu OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.528e-28
Identity = 62/91 (68.13%), Postives = 70/91 (76.92%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVL KEEGGRH+PFF GYRPQFY RTTDVTG       +  E  +MVMPGD +KMVV LI P+A E G+RFAIREGG+TVGAGV+  IIE
Sbjct:  312 VYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGNC-----ELPEGVEMVMPGDNIKMVVTLIAPIAMEDGLRFAIREGGRTVGAGVVAKIIE 397          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_PSEA7 (Elongation factor Tu OS=Pseudomonas aeruginosa (strain PA7) GN=tuf1 PE=3 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 1.528e-28
Identity = 62/91 (68.13%), Postives = 70/91 (76.92%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVL KEEGGRH+PFF GYRPQFY RTTDVTG       +  E  +MVMPGD +KMVV LI P+A E G+RFAIREGG+TVGAGV+  IIE
Sbjct:  312 VYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGNC-----ELPEGVEMVMPGDNIKMVVTLIAPIAMEDGLRFAIREGGRTVGAGVVAKIIE 397          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_PSEMY (Elongation factor Tu OS=Pseudomonas mendocina (strain ymp) GN=tuf PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.996e-28
Identity = 62/91 (68.13%), Postives = 70/91 (76.92%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVL KEEGGRH+PFF GYRPQFY RTTDVTG       +  E  +MVMPGD +KMVV LI P+A E G+RFAIREGG+TVGAGV+  IIE
Sbjct:  312 VYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGSC-----ELPEGVEMVMPGDNIKMVVTLIKPIAMEDGLRFAIREGGRTVGAGVVAKIIE 397          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_MOOTA (Elongation factor Tu OS=Moorella thermoacetica (strain ATCC 39073) GN=tuf PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.996e-28
Identity = 61/91 (67.03%), Postives = 72/91 (79.12%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVL KEEGGRH+PFF GYRPQFY RTTDVTG V+       E  +MVMPGD ++M +ELI P+A E+G+RFAIREGG+TVGAGV+  IIE
Sbjct:  315 VYVLTKEEGGRHTPFFNGYRPQFYFRTTDVTGVVNL-----PEGVEMVMPGDNIRMTIELITPIAIEEGLRFAIREGGRTVGAGVVTGIIE 400          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_COXBU (Elongation factor Tu OS=Coxiella burnetii GN=tufA PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.996e-28
Identity = 60/91 (65.93%), Postives = 73/91 (80.22%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            +YVL KEEGGRH+PF  GYRPQFY RTTDVTG++ S+     E  +MVMPGD VK+ VELI PVA ++G+RFA+REGG+TVGAGV+  IIE
Sbjct:  311 IYVLSKEEGGRHTPFLQGYRPQFYFRTTDVTGQLLSL----PEGIEMVMPGDNVKVTVELIAPVAMDEGLRFAVREGGRTVGAGVVTKIIE 397          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_COXBR (Elongation factor Tu OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.996e-28
Identity = 60/91 (65.93%), Postives = 73/91 (80.22%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            +YVL KEEGGRH+PF  GYRPQFY RTTDVTG++ S+     E  +MVMPGD VK+ VELI PVA ++G+RFA+REGG+TVGAGV+  IIE
Sbjct:  311 IYVLSKEEGGRHTPFLQGYRPQFYFRTTDVTGQLLSL----PEGIEMVMPGDNVKVTVELIAPVAMDEGLRFAVREGGRTVGAGVVTKIIE 397          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_COXBN (Elongation factor Tu OS=Coxiella burnetii (strain Dugway 5J108-111) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.996e-28
Identity = 60/91 (65.93%), Postives = 73/91 (80.22%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            +YVL KEEGGRH+PF  GYRPQFY RTTDVTG++ S+     E  +MVMPGD VK+ VELI PVA ++G+RFA+REGG+TVGAGV+  IIE
Sbjct:  311 IYVLSKEEGGRHTPFLQGYRPQFYFRTTDVTGQLLSL----PEGIEMVMPGDNVKVTVELIAPVAMDEGLRFAVREGGRTVGAGVVTKIIE 397          
The following BLAST results are available for this feature:
BLAST of DN617892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_ACTSZ1.170e-2867.03Elongation factor Tu OS=Actinobacillus succinogene... [more]
EFTU_WIGBR1.528e-2866.67Elongation factor Tu OS=Wigglesworthia glossinidia... [more]
EFTU_PSEAE1.528e-2868.13Elongation factor Tu OS=Pseudomonas aeruginosa GN=... [more]
EFTU_PSEAB1.528e-2868.13Elongation factor Tu OS=Pseudomonas aeruginosa (st... [more]
EFTU_PSEA71.528e-2868.13Elongation factor Tu OS=Pseudomonas aeruginosa (st... [more]
EFTU_PSEMY1.996e-2868.13Elongation factor Tu OS=Pseudomonas mendocina (str... [more]
EFTU_MOOTA1.996e-2867.03Elongation factor Tu OS=Moorella thermoacetica (st... [more]
EFTU_COXBU1.996e-2865.93Elongation factor Tu OS=Coxiella burnetii GN=tufA ... [more]
EFTU_COXBR1.996e-2865.93Elongation factor Tu OS=Coxiella burnetii (strain ... [more]
EFTU_COXBN1.996e-2865.93Elongation factor Tu OS=Coxiella burnetii (strain ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01N07_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001N07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617892 ID=DN617892; Name=DN617892; organism=Citrus sinensis; type=EST; length=535bp
CCACGAGGCAAATCAACATTGAGCTGAAGCAACTGAGGAAAAGTGAGTCA
TATTGAATTATCACATGAACATTTTCCAACTAGACTTGACATGAGTTCAA
TGCAAAATAAGAACAAAACTGCAAATTATATGACATTAGGTTCTGGAAGT
TCCTAGAATGGTGAAACTAATTCCATAAAAACTTAAGAATATGAAGTTTA
ACACCGCTCAAAAAAGTAAAAGATAATCCACTGCCCATGAAAGTTCCTAG
TACTATCATTCAATGATGGACTGAATAACACCAGCTCCAACAGTCTTTCC
TCCTTCTCTGATGGCAAATCTCATCCCTTGCTCACAAGCCACTGGCATAA
TAAGCTCCACAACCATCTTGACACGGTCGCCAGGCATAACCATCTTGGAC
TCCTCGTCCTTGTCGTTCATAATAGAAGACACCCTTCCAGTCACATCAGT
GGTCCTCATGTAAAATTGAGGCCTGTAACCCGCAAAGAAAGGTGAGTGCC
TACCACCTTCTTCCTTCTTCAACACATACACAATG
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