DN617892

Overview
NameDN617892
Unique NameDN617892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length535
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6850 contig Csv1_Contig6850:708..1242. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_CHLAU (Elongation factor Tu (Fragment) OS=Chloroflexus aurantiacus GN=tuf PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.996e-28
Identity = 60/91 (65.93%), Postives = 73/91 (80.22%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVLKKEEGGRH+PFF+GYRPQFY+RTTDVTG +           +MVMPGD V M +ELI+PVA E+G+RFAIREGG+TVGAGV+  I++
Sbjct:  297 VYVLKKEEGGRHTPFFSGYRPQFYIRTTDVTGAIGLPAG-----MEMVMPGDNVVMTIELIVPVAIEEGLRFAIREGGRTVGAGVVTKILD 382          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_CHLAA (Elongation factor Tu OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.996e-28
Identity = 60/91 (65.93%), Postives = 73/91 (80.22%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVLKKEEGGRH+PFF+GYRPQFY+RTTDVTG +           +MVMPGD V M +ELI+PVA E+G+RFAIREGG+TVGAGV+  I++
Sbjct:  316 VYVLKKEEGGRHTPFFSGYRPQFYIRTTDVTGAIGLPAG-----MEMVMPGDNVVMTIELIVPVAIEEGLRFAIREGGRTVGAGVVTKILD 401          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU2_PSEU5 (Elongation factor Tu 2 OS=Pseudomonas stutzeri (strain A1501) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.996e-28
Identity = 62/91 (68.13%), Postives = 70/91 (76.92%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVL KEEGGRH+PFF GYRPQFY RTTDVTG       +  E  +MVMPGD VKMVV LI P+A E G+RFAIREGG+TVGAGV+  I+E
Sbjct:  312 VYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGSC-----ELPEGVEMVMPGDNVKMVVTLIKPIAMEDGLRFAIREGGRTVGAGVVAKIVE 397          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU1_PSEU5 (Elongation factor Tu 1 OS=Pseudomonas stutzeri (strain A1501) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.996e-28
Identity = 62/91 (68.13%), Postives = 70/91 (76.92%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVL KEEGGRH+PFF GYRPQFY RTTDVTG       +  E  +MVMPGD VKMVV LI P+A E G+RFAIREGG+TVGAGV+  I+E
Sbjct:  312 VYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGSC-----ELPEGVEMVMPGDNVKMVVTLIKPIAMEDGLRFAIREGGRTVGAGVVAKIVE 397          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_VIBC3 (Elongation factor Tu OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.606e-28
Identity = 60/90 (66.67%), Postives = 72/90 (80.00%), Query Frame = -2
Query:  262 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 531
            VYVL K+EGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD VKMVV+LI P+A ++G+RFAIREGG+TVGAGV+  II
Sbjct:  309 VYVLSKDEGGRHTPFFKGYRPQFYFRTTDVTGSI-----ELPEGVEMVMPGDNVKMVVDLIAPIAMDEGLRFAIREGGRTVGAGVVAKII 393          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_KOSOT (Elongation factor Tu OS=Kosmotoga olearia (strain TBF 19.5.1) GN=tuf PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.606e-28
Identity = 62/91 (68.13%), Postives = 71/91 (78.02%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            +YVLKKEEGGRH+PF  GYRPQFY+RT DVTG +     D  E  +MVMPGD V M VELI PVA E+GMRFA+REGG+TVGAGV+  IIE
Sbjct:  313 IYVLKKEEGGRHTPFTKGYRPQFYIRTADVTGELV----DLPEGVEMVMPGDNVVMTVELIYPVAIEKGMRFAVREGGRTVGAGVVSEIIE 399          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_DESDG (Elongation factor Tu OS=Desulfovibrio desulfuricans (strain G20) GN=tuf PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.606e-28
Identity = 60/91 (65.93%), Postives = 71/91 (78.02%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVL KEEGGRH+PFF+GYRPQFY RTTD+TG +       +E  +MVMPGD    +VELI PVA EQG+RFAIREGG+TVGAGV+  I+E
Sbjct:  312 VYVLSKEEGGRHTPFFSGYRPQFYFRTTDITGIIGL-----EEGVEMVMPGDNATFIVELIHPVAMEQGLRFAIREGGRTVGAGVVSEILE 397          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_BUCBP (Elongation factor Tu OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=tuf PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.606e-28
Identity = 59/91 (64.84%), Postives = 71/91 (78.02%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVL KEEGGRH+PFF GYRPQFY RTTDVTG V     +  E+ +MVMPGD VKMV+ LI P+A   G+RFAIREGGKTVGAG++  +++
Sbjct:  309 VYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGSV-----ELPEDMEMVMPGDNVKMVITLIHPIAMSDGLRFAIREGGKTVGAGIVVKVLQ 394          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_BACCN (Elongation factor Tu OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=tuf PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.606e-28
Identity = 62/91 (68.13%), Postives = 72/91 (79.12%), Query Frame = -2
Query:  259 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 531
            VYVL KEEGGRH+PFFA YRPQFY RTTDVTG +        E ++MVMPGD V+M VELI PVA E+G +F+IREGG+TVGAGV+ SIIE
Sbjct:  310 VYVLSKEEGGRHTPFFANYRPQFYFRTTDVTGIIQL-----PEGTEMVMPGDNVEMTVELIAPVAVEEGTKFSIREGGRTVGAGVVASIIE 395          
BLAST of DN617892 vs. ExPASy Swiss-Prot
Match: EFTU_AERS4 (Elongation factor Tu OS=Aeromonas salmonicida (strain A449) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.606e-28
Identity = 60/90 (66.67%), Postives = 71/90 (78.89%), Query Frame = -2
Query:  262 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 531
            VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD +KMVV LI P+A + G+RFAIREGG+TVGAGV+ S+I
Sbjct:  309 VYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMVVTLIAPIAMDDGLRFAIREGGRTVGAGVVASVI 393          
The following BLAST results are available for this feature:
BLAST of DN617892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_CHLAU1.996e-2865.93Elongation factor Tu (Fragment) OS=Chloroflexus au... [more]
EFTU_CHLAA1.996e-2865.93Elongation factor Tu OS=Chloroflexus aurantiacus (... [more]
EFTU2_PSEU51.996e-2868.13Elongation factor Tu 2 OS=Pseudomonas stutzeri (st... [more]
EFTU1_PSEU51.996e-2868.13Elongation factor Tu 1 OS=Pseudomonas stutzeri (st... [more]
EFTU_VIBC32.606e-2866.67Elongation factor Tu OS=Vibrio cholerae serotype O... [more]
EFTU_KOSOT2.606e-2868.13Elongation factor Tu OS=Kosmotoga olearia (strain ... [more]
EFTU_DESDG2.606e-2865.93Elongation factor Tu OS=Desulfovibrio desulfurican... [more]
EFTU_BUCBP2.606e-2864.84Elongation factor Tu OS=Buchnera aphidicola subsp.... [more]
EFTU_BACCN2.606e-2868.13Elongation factor Tu OS=Bacillus cereus subsp. cyt... [more]
EFTU_AERS42.606e-2866.67Elongation factor Tu OS=Aeromonas salmonicida (str... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01N07_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001N07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617892 ID=DN617892; Name=DN617892; organism=Citrus sinensis; type=EST; length=535bp
CCACGAGGCAAATCAACATTGAGCTGAAGCAACTGAGGAAAAGTGAGTCA
TATTGAATTATCACATGAACATTTTCCAACTAGACTTGACATGAGTTCAA
TGCAAAATAAGAACAAAACTGCAAATTATATGACATTAGGTTCTGGAAGT
TCCTAGAATGGTGAAACTAATTCCATAAAAACTTAAGAATATGAAGTTTA
ACACCGCTCAAAAAAGTAAAAGATAATCCACTGCCCATGAAAGTTCCTAG
TACTATCATTCAATGATGGACTGAATAACACCAGCTCCAACAGTCTTTCC
TCCTTCTCTGATGGCAAATCTCATCCCTTGCTCACAAGCCACTGGCATAA
TAAGCTCCACAACCATCTTGACACGGTCGCCAGGCATAACCATCTTGGAC
TCCTCGTCCTTGTCGTTCATAATAGAAGACACCCTTCCAGTCACATCAGT
GGTCCTCATGTAAAATTGAGGCCTGTAACCCGCAAAGAAAGGTGAGTGCC
TACCACCTTCTTCCTTCTTCAACACATACACAATG
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