DN617891

Overview
NameDN617891
Unique NameDN617891
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length532
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4105 contig Csv1_Contig4105:88..619. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617891 vs. ExPASy Swiss-Prot
Match: PSB6_TOBAC (Proteasome subunit beta type-6 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.010e-17
Identity = 48/133 (36.09%), Postives = 76/133 (57.14%), Query Frame = 3
Query:  126 GTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD-CTGPHLHTIYPHGSTDTLPFATMGSGS 521
            GTTI+G+ +  GV+LGAD+R + G  V ++  +KI  +  N+Y C +G+AAD++ V+D V   L  H    G+ + V  A  L +   +N +  +Q  +++GG D   G  ++ I P G+    PFA  GSGS
Sbjct:   13 GTTIIGVTYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLTRLLSYNNKDRLQTGMIIGGWDKYEGGKIYGIPPGGTVLEQPFAIGGSGS 145          
BLAST of DN617891 vs. ExPASy Swiss-Prot
Match: PSB6_YEAST (Proteasome component PRE3 OS=Saccharomyces cerevisiae GN=PRE3 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 5.848e-17
Identity = 48/133 (36.09%), Postives = 79/133 (59.40%), Query Frame = 3
Query:  126 GTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGP-HLHTIYPHGSTDTLPFATMGSGS 521
            GT+I+ + F+DGVILGAD+R T G  + ++  +K+  +   I+CC +G+AADT+A+ D+V   L+L+    G  S   TA ++ K+  +  +  + A +++ G D      ++TI   GS   LP+A  GSGS
Sbjct:   19 GTSIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGTPS-TETAASVFKELCYENKDNLTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGS 150          
BLAST of DN617891 vs. ExPASy Swiss-Prot
Match: PSB6_RAT (Proteasome subunit beta type-6 OS=Rattus norvegicus GN=Psmb6 PE=1 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 9.975e-17
Identity = 48/134 (35.82%), Postives = 76/134 (56.72%), Query Frame = 3
Query:  123 TGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD-CTGPHLHTIYPHGSTDTLPFATMGSGS 521
            TGTTI+ + F  GV+LGAD+R T G  + ++  +K+  +  +I+CC +G+AADT+AV D V+ QL  H         V TA +L K+  + Y+  + A +++ G D   G  ++++   G      FA  GSGS
Sbjct:   32 TGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDHIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGS 165          
BLAST of DN617891 vs. ExPASy Swiss-Prot
Match: PSB6_MOUSE (Proteasome subunit beta type-6 OS=Mus musculus GN=Psmb6 PE=1 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 9.975e-17
Identity = 48/134 (35.82%), Postives = 76/134 (56.72%), Query Frame = 3
Query:  123 TGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD-CTGPHLHTIYPHGSTDTLPFATMGSGS 521
            TGTTI+ + F  GV+LGAD+R T G  + ++  +K+  +  +I+CC +G+AADT+AV D V+ QL  H         V TA +L K+  + Y+  + A +++ G D   G  ++++   G      FA  GSGS
Sbjct:   32 TGTTIMAVQFNGGVVLGADSRTTTGSYIANRVTDKLTPIHDHIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGS 165          
BLAST of DN617891 vs. ExPASy Swiss-Prot
Match: PSB6_HUMAN (Proteasome subunit beta type-6 OS=Homo sapiens GN=PSMB6 PE=1 SV=4)

HSP 1 Score: 85.8853 bits (211), Expect = 1.303e-16
Identity = 48/134 (35.82%), Postives = 75/134 (55.97%), Query Frame = 3
Query:  123 TGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD-CTGPHLHTIYPHGSTDTLPFATMGSGS 521
            TGTTI+ + F  GV+LGAD+R T G  + ++  +K+  +   I+CC +G+AADT+AV D V+ QL  H         V TA +L K+  + Y+  + A +++ G D   G  ++++   G      FA  GSGS
Sbjct:   33 TGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGS 166          
BLAST of DN617891 vs. ExPASy Swiss-Prot
Match: PSB9_ORYLA (Proteasome subunit beta type-9 OS=Oryzias latipes GN=psmb9 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.209e-15
Identity = 46/134 (34.33%), Postives = 72/134 (53.73%), Query Frame = 3
Query:  120 KTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGS 521
            KTGTTI+ + F  GV+LG+D+R + G  V ++   K+  +   IYC  +G+AAD + + +MV+ QL +H      + +V +A TL+K   + Y+  + A L++ G D            G     PFA  GSGS
Sbjct:   16 KTGTTIIAIEFNGGVVLGSDSRVSAGDSVVNRVMNKLSPLHDKIYCALSGSAADAQTIAEMVNYQLDVHSLEIDEDPQVRSAATLVKNISYKYKEELSAHLIVAGWDRRDGGQVFATLGGLLTRQPFAIGGSGS 149          
BLAST of DN617891 vs. ExPASy Swiss-Prot
Match: PSB6_DICDI (Proteasome subunit beta type-6 OS=Dictyostelium discoideum GN=psmB6 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.209e-15
Identity = 47/133 (35.34%), Postives = 75/133 (56.39%), Query Frame = 3
Query:  126 GTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD-CTGPHLHTIYPHGSTDTLPFATMGSGS 521
            GT+I+ + +  GVI+GAD+R T G  + ++   KI  +   IYCC +G+AADT+A++D V   L++H      E  V TA +L +   ++ +  + A +++ G D   G  ++ I   GS    PFA  GSGS
Sbjct:   14 GTSIMAVEYDGGVIMGADSRTTTGAYIANRVTNKITPIHERIYCCRSGSAADTQAISDYVRYYLEMHTSELCDEPDVKTAASLFQLLCYSNKNNLMAGIIVAGWDKHQGGSVYNISLGGSMVKQPFAIGGSGS 146          
BLAST of DN617891 vs. ExPASy Swiss-Prot
Match: PB6LB_SALSA (Proteasome subunit beta type-6-B like protein OS=Salmo salar GN=psmb6l-b PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.592e-14
Identity = 48/135 (35.56%), Postives = 71/135 (52.59%), Query Frame = 3
Query:  123 TGTTIVGLIFQDGVILGADTRAT-EGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD-CTGPHLHTIYPHGSTDTLPFATMGSGS 521
            TGTTI+ + F  GVI+G+D+RA+  G  V  K   K+  +   I+CC AG+ AD +AVT     Q+  H         V  A ++LK+  +N +  +QA  +  G D   GP ++T+   G   + PF   GSGS
Sbjct:   15 TGTTILAVTFNGGVIIGSDSRASIGGSYVSSKTINKLIQVHDRIFCCIAGSLADAQAVTKAAKFQISFHSIQMESPPLVKAAASVLKELCYNNKEELQAGFITAGWDRKKGPQVYTVALGGMLLSQPFTIGGSGS 149          
BLAST of DN617891 vs. ExPASy Swiss-Prot
Match: PB6LA_SALSA (Proteasome subunit beta type-6-A like protein OS=Salmo salar GN=psmb6l-a PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.592e-14
Identity = 48/135 (35.56%), Postives = 71/135 (52.59%), Query Frame = 3
Query:  123 TGTTIVGLIFQDGVILGADTRAT-EGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD-CTGPHLHTIYPHGSTDTLPFATMGSGS 521
            TGTTI+ + F  GVI+G+D+RA+  G  V  K   K+  +   I+CC AG+ AD +AVT     Q+  H         V  A ++LK+  +N +  +QA  +  G D   GP ++T+   G   + PF   GSGS
Sbjct:   15 TGTTILAVTFNGGVIIGSDSRASIGGSYVSSKTINKLIQVHDRIFCCIAGSLADAQAVTKAAKFQISFHSIQMESPPLVKAAASVLKELCYNNKEELQAGFITAGWDRKKGPQVYTVALGGMLLSQPFTIGGSGS 149          
BLAST of DN617891 vs. ExPASy Swiss-Prot
Match: PSB9_HUMAN (Proteasome subunit beta type-9 OS=Homo sapiens GN=PSMB9 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 3.922e-13
Identity = 46/135 (34.07%), Postives = 73/135 (54.07%), Query Frame = 3
Query:  123 TGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCT--GPHLHTIYPHGSTDTLPFATMGSGS 521
            TGTTI+ + F  GV++G+D+R + G  V ++  +K+  +   IYC  +G+AAD +AV DM + QL+LH         V+ A  +++   + Y+  + A L++ G D    G    T+   G     PFA  GSGS
Sbjct:   19 TGTTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAVADMAAYQLELHGIELEEPPLVLAAANVVRNISYKYREDLSAHLMVAGWDQREGGQVYGTL--GGMLTRQPFAIGGSGS 151          
The following BLAST results are available for this feature:
BLAST of DN617891 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
PSB6_TOBAC2.010e-1736.09Proteasome subunit beta type-6 OS=Nicotiana tabacu... [more]
PSB6_YEAST5.848e-1736.09Proteasome component PRE3 OS=Saccharomyces cerevis... [more]
PSB6_RAT9.975e-1735.82Proteasome subunit beta type-6 OS=Rattus norvegicu... [more]
PSB6_MOUSE9.975e-1735.82Proteasome subunit beta type-6 OS=Mus musculus GN=... [more]
PSB6_HUMAN1.303e-1635.82Proteasome subunit beta type-6 OS=Homo sapiens GN=... [more]
PSB9_ORYLA3.209e-1534.33Proteasome subunit beta type-9 OS=Oryzias latipes ... [more]
PSB6_DICDI3.209e-1535.34Proteasome subunit beta type-6 OS=Dictyostelium di... [more]
PB6LB_SALSA1.592e-1435.56Proteasome subunit beta type-6-B like protein OS=S... [more]
PB6LA_SALSA1.592e-1435.56Proteasome subunit beta type-6-A like protein OS=S... [more]
PSB9_HUMAN3.922e-1334.07Proteasome subunit beta type-9 OS=Homo sapiens GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01N06_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001N06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617891 ID=DN617891; Name=DN617891; organism=Citrus sinensis; type=EST; length=532bp
GAAAGTTTAAAATGTCAAACTCTGCAATAGATGTTCCTTCCAGGGGTGGA
TTTAGTTTTGATCTCTGCCGGCGGAATGATATGCTTGCAAAGAAGGGTGT
CAACCTTCCATCTTTCCGAAAGACGGGGACGACCATTGTTGGGTTGATTT
TCCAGGATGGCGTCATTCTTGGGGCAGATACCAGAGCAACTGAAGGACCC
ATAGTTTGCGATAAGAATTGTGAGAAAATTCATTACATGGCTCCAAACAT
ATATTGTTGTGGTGCAGGAACTGCTGCTGACACAGAGGCTGTAACTGACA
TGGTCAGCTCACAGCTGCAGTTACATCGTTATCATACTGGTAGAGAGTCA
AGGGTTGTTACAGCACTGACTCTTCTCAAGAAGCACCTTTTCAACTACCA
AGGTTATGTGCAAGCTGCTTTGGTTCTTGGTGGAGTTGATTGCACTGGAC
CTCATCTTCACACAATATATCCACATGGTTCAACTGACACTTTACCATTT
GCGACAATGGGTTCTGGTTCTCTTGCTGCCAT
back to top