DN617891

Overview
NameDN617891
Unique NameDN617891
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length532
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4105 contig Csv1_Contig4105:88..619. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617891 vs. ExPASy Swiss-Prot
Match: PSB9_BOVIN (Proteasome subunit beta type-9 OS=Bos taurus GN=PSMB9 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.691e-13
Identity = 43/133 (32.33%), Postives = 71/133 (53.38%), Query Frame = 3
Query:  123 TGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGS 521
            TGTTI+ + F  GV++G+D+R + G  V ++  +K+  +  +IYC  +G+AAD +A+ DM + QL+LH         V+ A  +++   + Y+  + A L++ G D            G     PFA  GSGS
Sbjct:   19 TGTTIMAVEFDGGVVVGSDSRVSAGEAVVNRVFDKLSPLHQHIYCALSGSAADAQAIADMAAYQLELHGMELEEPPLVLAAANVVRNITYKYREDLSAHLMVAGWDQREGGQVYGTMSGMLIRQPFAIGGSGS 151          
BLAST of DN617891 vs. ExPASy Swiss-Prot
Match: PSB9_RAT (Proteasome subunit beta type-9 OS=Rattus norvegicus GN=Psmb9 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 8.738e-13
Identity = 45/134 (33.58%), Postives = 73/134 (54.48%), Query Frame = 3
Query:  123 TGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD-CTGPHLHTIYPHGSTDTLPFATMGSGS 521
            TGTTI+ + F  GV++G+D+R + G  V ++  +K+  +   IYC  +G+AAD +A+ DM + QL+LH         V+ A  ++K   + Y+  + A L++ G D   G  ++     G     PFA  GSGS
Sbjct:   19 TGTTIMAVEFDGGVVVGSDSRVSAGAAVVNRVFDKLSPLHQRIYCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANIVKNISYKYREDLLAHLMVAGWDQHEGGQVYGTM-GGMLIRQPFAIGGSGS 151          
BLAST of DN617891 vs. ExPASy Swiss-Prot
Match: PSB9_MUSMB (Proteasome subunit beta type-9 OS=Mus musculus bactrianus GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.321e-12
Identity = 42/133 (31.58%), Postives = 69/133 (51.88%), Query Frame = 3
Query:  123 TGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGS 521
            TGTTI+ + F  GV++G+D+R + G  V ++  +K+  +   I+C  +G+AAD +A+ DM + QL+LH         V+ A  ++K   + Y+  + A L++ G D            G     PF   GSGS
Sbjct:   19 TGTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWDQREGGQVYGTMGGMLIRQPFTISGSGS 151          
BLAST of DN617891 vs. ExPASy Swiss-Prot
Match: PSB9_MUSSI (Proteasome subunit beta type-9 OS=Mus spicilegus GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.664e-12
Identity = 35/106 (33.02%), Postives = 62/106 (58.49%), Query Frame = 3
Query:  123 TGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD 440
            TGTTI+ + F  GV++G+D+R + G  V ++  +K+  +   I+C  +G+AAD +A+ DM + QL+LH         V+ A  ++K   + Y+  + A L++ G D
Sbjct:   19 TGTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWD 124          
BLAST of DN617891 vs. ExPASy Swiss-Prot
Match: PSB9_MUSPL (Proteasome subunit beta type-9 OS=Mus platythrix GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.664e-12
Identity = 35/106 (33.02%), Postives = 62/106 (58.49%), Query Frame = 3
Query:  123 TGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD 440
            TGTTI+ + F  GV++G+D+R + G  V ++  +K+  +   I+C  +G+AAD +A+ DM + QL+LH         V+ A  ++K   + Y+  + A L++ G D
Sbjct:   19 TGTTIMAVEFDGGVVVGSDSRVSAGEAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWD 124          
BLAST of DN617891 vs. ExPASy Swiss-Prot
Match: PSB9_MUSDU (Proteasome subunit beta type-9 OS=Mus dunni GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.664e-12
Identity = 35/106 (33.02%), Postives = 62/106 (58.49%), Query Frame = 3
Query:  123 TGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD 440
            TGTTI+ + F  GV++G+D+R + G  V ++  +K+  +   I+C  +G+AAD +A+ DM + QL+LH         V+ A  ++K   + Y+  + A L++ G D
Sbjct:   19 TGTTIMAVEFDGGVVVGSDSRVSAGAAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWD 124          
BLAST of DN617891 vs. ExPASy Swiss-Prot
Match: PSB9_MOUSE (Proteasome subunit beta type-9 OS=Mus musculus GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.664e-12
Identity = 35/106 (33.02%), Postives = 62/106 (58.49%), Query Frame = 3
Query:  123 TGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD 440
            TGTTI+ + F  GV++G+D+R + G  V ++  +K+  +   I+C  +G+AAD +A+ DM + QL+LH         V+ A  ++K   + Y+  + A L++ G D
Sbjct:   19 TGTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWD 124          
BLAST of DN617891 vs. ExPASy Swiss-Prot
Match: PSMB_ARCFU (Proteasome subunit beta OS=Archaeoglobus fulgidus GN=psmB PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.262e-11
Identity = 41/137 (29.93%), Postives = 70/137 (51.09%), Query Frame = 3
Query:  126 GTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY-VQAALVLGGVDCTGPHLHTIYP-HGSTDTLPFATMGSGSLAA 530
            GTT VGL+ +DGV++  + RAT G  +  K  +KI+ +A  +    AG+  D + +  ++  +  L+     R+  V    TL    L +Y+ +     L++GG+D  G  +++I P  G+ +       GSGSL A
Sbjct:   11 GTTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGSGSLTA 147          
BLAST of DN617891 vs. ExPASy Swiss-Prot
Match: PSMB_PYRFU (Proteasome subunit beta OS=Pyrococcus furiosus GN=psmB PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.795e-11
Identity = 46/136 (33.82%), Postives = 69/136 (50.74%), Query Frame = 3
Query:  126 GTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHL-----FNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSG 518
            GTT VGL+ ++GV+L ADTRA+ G I+  KN  KIH +  ++   GAG   D   +  ++ ++  L++   G+E  V    TLL   L     F Y G+     ++GG D   P L ++   G      +A  GSG
Sbjct:   10 GTTTVGLVCKEGVVLAADTRASLGNIIYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLKAEANLYKSTVGKEMSVKALATLLANILNGSKYFPYLGW----FLVGGYD-EKPRLFSVDMVGGITEDNYAAAGSG 140          
BLAST of DN617891 vs. ExPASy Swiss-Prot
Match: PSMB_METTE (Proteasome subunit beta OS=Methanosarcina thermophila GN=psmB PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.262e-11
Identity = 39/135 (28.89%), Postives = 71/135 (52.59%), Query Frame = 3
Query:  126 GTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY--VQAALVLGGVDCTGPHLHTI-YPHGSTDTLPFATMGSGS 521
            GTT VG++  DG++L ++ RAT G  +  K  +K++ +   +    AG+  D + +  +VS + QL++     ES  +  +T L  +  +   Y  +   L++GGVD  GP ++++    GS +    +  GSGS
Sbjct:    9 GTTTVGVVCTDGIVLASEQRATMGHFIASKTAKKVYQIDDLVGMTTAGSVGDAQQLVRLVSVESQLYKMRRD-ESMTIKGITTLMSNFLSRNRYYPMMVQLLIGGVDKNGPGIYSLDAMGGSIEETRISATGSGS 142          
The following BLAST results are available for this feature:
BLAST of DN617891 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
PSB9_BOVIN6.691e-1332.33Proteasome subunit beta type-9 OS=Bos taurus GN=PS... [more]
PSB9_RAT8.738e-1333.58Proteasome subunit beta type-9 OS=Rattus norvegicu... [more]
PSB9_MUSMB3.321e-1231.58Proteasome subunit beta type-9 OS=Mus musculus bac... [more]
PSB9_MUSSI5.664e-1233.02Proteasome subunit beta type-9 OS=Mus spicilegus G... [more]
PSB9_MUSPL5.664e-1233.02Proteasome subunit beta type-9 OS=Mus platythrix G... [more]
PSB9_MUSDU5.664e-1233.02Proteasome subunit beta type-9 OS=Mus dunni GN=Psm... [more]
PSB9_MOUSE5.664e-1233.02Proteasome subunit beta type-9 OS=Mus musculus GN=... [more]
PSMB_ARCFU1.262e-1129.93Proteasome subunit beta OS=Archaeoglobus fulgidus ... [more]
PSMB_PYRFU4.795e-1133.82Proteasome subunit beta OS=Pyrococcus furiosus GN=... [more]
PSMB_METTE6.262e-1128.89Proteasome subunit beta OS=Methanosarcina thermoph... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01N06_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001N06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617891 ID=DN617891; Name=DN617891; organism=Citrus sinensis; type=EST; length=532bp
GAAAGTTTAAAATGTCAAACTCTGCAATAGATGTTCCTTCCAGGGGTGGA
TTTAGTTTTGATCTCTGCCGGCGGAATGATATGCTTGCAAAGAAGGGTGT
CAACCTTCCATCTTTCCGAAAGACGGGGACGACCATTGTTGGGTTGATTT
TCCAGGATGGCGTCATTCTTGGGGCAGATACCAGAGCAACTGAAGGACCC
ATAGTTTGCGATAAGAATTGTGAGAAAATTCATTACATGGCTCCAAACAT
ATATTGTTGTGGTGCAGGAACTGCTGCTGACACAGAGGCTGTAACTGACA
TGGTCAGCTCACAGCTGCAGTTACATCGTTATCATACTGGTAGAGAGTCA
AGGGTTGTTACAGCACTGACTCTTCTCAAGAAGCACCTTTTCAACTACCA
AGGTTATGTGCAAGCTGCTTTGGTTCTTGGTGGAGTTGATTGCACTGGAC
CTCATCTTCACACAATATATCCACATGGTTCAACTGACACTTTACCATTT
GCGACAATGGGTTCTGGTTCTCTTGCTGCCAT
back to top