DN617891

Overview
NameDN617891
Unique NameDN617891
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length532
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4105 contig Csv1_Contig4105:88..619. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DN617891 vs. ExPASy Swiss-Prot
Match: PSMB_METJA (Proteasome subunit beta OS=Methanocaldococcus jannaschii GN=psmB PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.262e-11
Identity = 44/135 (32.59%), Postives = 70/135 (51.85%), Query Frame = 3 
Query:  126 GTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY-VQAALVLGGVD-CTGPHLHTIYP-HGSTDTLPFATMGSGS 521
            GTT VGLI  D VIL  D RA+ G +V DK  +K++ +   I    AG+  D +A+  ++ ++ +L++  TGR    +   TLL   L + + +     +++GG D   G  L ++ P  G  +   F   GSGS
Sbjct:    6 GTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLACATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGS 140
The following BLAST results are available for this feature:
BLAST of DN617891 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
PSMB_METJA6.262e-1132.59Proteasome subunit beta OS=Methanocaldococcus jann... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01N06_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001N06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617891 ID=DN617891; Name=DN617891; organism=Citrus sinensis; type=EST; length=532bp
GAAAGTTTAAAATGTCAAACTCTGCAATAGATGTTCCTTCCAGGGGTGGA
TTTAGTTTTGATCTCTGCCGGCGGAATGATATGCTTGCAAAGAAGGGTGT
CAACCTTCCATCTTTCCGAAAGACGGGGACGACCATTGTTGGGTTGATTT
TCCAGGATGGCGTCATTCTTGGGGCAGATACCAGAGCAACTGAAGGACCC
ATAGTTTGCGATAAGAATTGTGAGAAAATTCATTACATGGCTCCAAACAT
ATATTGTTGTGGTGCAGGAACTGCTGCTGACACAGAGGCTGTAACTGACA
TGGTCAGCTCACAGCTGCAGTTACATCGTTATCATACTGGTAGAGAGTCA
AGGGTTGTTACAGCACTGACTCTTCTCAAGAAGCACCTTTTCAACTACCA
AGGTTATGTGCAAGCTGCTTTGGTTCTTGGTGGAGTTGATTGCACTGGAC
CTCATCTTCACACAATATATCCACATGGTTCAACTGACACTTTACCATTT
GCGACAATGGGTTCTGGTTCTCTTGCTGCCAT
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