DN617887

Overview
NameDN617887
Unique NameDN617887
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617887 vs. ExPASy Swiss-Prot
Match: WDR48_DICDI (WD repeat-containing protein 48 homolog OS=Dictyostelium discoideum GN=DDB_G0277533 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.200e-17
Identity = 56/158 (35.44%), Postives = 82/158 (51.90%), Query Frame = 3
Query:  165 RPRKEKRLTYVLNNSDDT----KHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLA-----DDVGSCSA-------TFESHVDWVNDAVLVGDNTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDI 590
            +P K K    V N  ++T    +HC G+N LA      ++    L++  RD T+K + +      +D+   +        +F  H DWVND      N LVSCSSD+T+K WN  S+  C+ +L+ H DYV  LA A K +N  AS GL + + IWD+
Sbjct:  130 KPPKFKISYSVKNTLNNTIIPDRHCFGVNSLAY-----NHRKSILYSAGRDSTIKSYQIGGGDNDNDINEKNEYGFKFKKSFNDHTDWVNDLFFNDSNILVSCSSDSTIKIWNTDSE-RCVNSLKFHDDYVKVLAYAPK-ANYFASSGLDSHIKIWDL 280          
BLAST of DN617887 vs. ExPASy Swiss-Prot
Match: YA4E_SCHPO (Uncharacterized WD repeat-containing protein C31A2.14 OS=Schizosaccharomyces pombe GN=SPAC31A2.14 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.902e-17
Identity = 53/150 (35.33%), Postives = 82/150 (54.67%), Query Frame = 3
Query:  171 RKEKRLTYVLNN-SDDTKHCAGINCLAVLKSSVSNG----VDYLFTGSRDGTLKRWSLADDVGSCS---ATFESHVDWVNDAVLVGDNT-LVSCSSDTTLKTWNCS-SDGTCIRTLRQHSDYVTCLAAAE-KNSNIVASGGLGAEVFIWD 587
            RK  ++TYVL++ +D   H    NCL + +     G       L++G RDG L  W +  D G  S   A  ++H  WVND  L  D+  ++SCSSD+T+K W     + +C+ T+ +H+DYV  ++  +   S +VASGGL   + +WD
Sbjct:    4 RKRYKVTYVLDSCNDQLGHRLDANCLVLGRYFSEQGSAPVTRALYSGGRDGQLFGWDIGYDYGKASQPLAKIQAHSAWVNDIALTHDSEGVISCSSDSTVKLWKPHVLNASCLSTIGEHTDYVKRVSIPKYSKSPLVASGGLDKRIIVWD 153          
BLAST of DN617887 vs. ExPASy Swiss-Prot
Match: WDR48_CULQU (WD repeat-containing protein 48 homolog OS=Culex quinquefasciatus GN=CpipJ_CPIJ014111 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.092e-16
Identity = 53/151 (35.10%), Postives = 80/151 (52.98%), Query Frame = 3
Query:  186 LTYVLNNSDDTKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGS--CSATFESHVDWVNDAVLV-GDNTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAM 629
            +++V+ ++++ +H  G+N L +      NG   L++  RD  ++ W+            + E H DWVND VL  G   L+S S DTT+K WN    G C+ TLR H DYV  LA A K+   VAS GL   +F+WD+    A + S + +
Sbjct:    2 VSFVIRDAEEKRHRNGVNALQL---DPVNG--RLYSAGRDAIIRVWNSTQTSSQEPYIQSMEHHNDWVNDIVLCCGGRNLISASCDTTVKVWNAHK-GFCMSTLRTHRDYVQALAYA-KDREQVASAGLDKAIFLWDVNTLTALTASNNTV 145          
BLAST of DN617887 vs. ExPASy Swiss-Prot
Match: WDR48_BRUMA (WD repeat-containing protein 48 homolog OS=Brugia malayi GN=Bm1_41555 PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.433e-16
Identity = 54/157 (34.39%), Postives = 80/157 (50.96%), Query Frame = 3
Query:  171 RKEKRLTYVLNNSDDTKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLAD---DVGSCSA--------------TFESHVDWVNDAVLVGDNTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDI 590
            +K+ ++++V+ +  +  H +G+NCL             LF+G  D  ++ W   D   D GS  +              + E H DWVND VL     ++S SSDTT+K WN    G C+ TLR H DYV  LA A ++  +VASGG    +++WDI
Sbjct:    7 KKKVQVSFVIRDEKEPMHRSGVNCL-----QYDAQTGRLFSGGSDTIIRIWKSPDRKDDSGSSYSVGGKTRVRRDLHLQSMEHHTDWVNDIVLCCG--VISASSDTTVKVWNAQK-GFCMSTLRTHRDYVRALAYA-RDVEMVASGGFDQLIYLWDI 154          
BLAST of DN617887 vs. ExPASy Swiss-Prot
Match: WDR48_CAEEL (WD repeat-containing protein 48 homolog OS=Caenorhabditis elegans GN=F35G12.4 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 5.609e-13
Identity = 51/170 (30.00%), Postives = 81/170 (47.65%), Query Frame = 3
Query:  156 NSTRPRKEKRLTYVLNNSDDTKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSA-----------------TFESHVDWVNDAVLVG-DNTLVSCSSDTTLKTWNCSSDG-----TCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEA 596
            N+++   +K++++++ +  +  + + ++ L   +    NG   LFTG  D  ++ WS+     + SA                 + E H DWVND +L G    L+S S+DTT+K WN   D       CIRT   H DYV+CLA A      V S      +F++DI A
Sbjct:    6 NTSQTGPKKKISFIIRDEHEYSNRSAVSAL---QYDAQNG--RLFTGGSDTIIRTWSVPHHKDAFSARGGVRSPGKNSPVQYQGSLEQHTDWVNDMILCGHGKILISASNDTTVKVWNIERDNKHGFIDCIRT---HKDYVSCLAYAPIVEKAV-SASFDHNIFVYDINA 166          
BLAST of DN617887 vs. ExPASy Swiss-Prot
Match: NUDF_ASPOR (Nuclear distribution protein nudF homolog OS=Aspergillus oryzae GN=nudF PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.249e-12
Identity = 41/107 (38.32%), Postives = 55/107 (51.40%), Query Frame = 3
Query:  255 KSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVL-VGDNTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAE 572
            + S +NG D++ TGSRD T+K W   D  G+C  T   H  WV   V   G   L+S S D TL+ W+ +  G C++TL  H  +VT L  A   +  V  G   AE
Sbjct:  315 RPSSTNGADFMATGSRDNTIKIW---DSRGTCLMTLVGHDSWVQALVFHPGGKYLLSVSDDKTLRCWDLNQQGKCVKTLDAHESFVTSLRWAPGVAKNVPGGDGAAE 418          
BLAST of DN617887 vs. ExPASy Swiss-Prot
Match: WDR48_CAEBR (WD repeat-containing protein 48 homolog OS=Caenorhabditis briggsae GN=CBG18038 PE=3 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 2.784e-12
Identity = 48/170 (28.24%), Postives = 82/170 (48.24%), Query Frame = 3
Query:  153 ANSTRPRKEKRLTYVLNNSDDTKHCAGINCLA--VLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSA-----------------TFESHVDWVNDAVLVGD-NTLVSCSSDTTLKTWNCSSDGT--CIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEA 596
            +N+++   +K+L++++ +  +  H + ++ L    L S        LFTG  D  ++ WS+     + SA                 + E H DWV D VL G+   LVS S+DTT+K W+   D     + +L  H+DYV+CLA A     +V S      +F++D+ +
Sbjct:    5 SNTSQSGSKKKLSFIIRDEQEPLHRSAVSALQYDALHSR-------LFTGGSDTIIRTWSVPQHKDAFSARGGVRSAGKNSPVQYQSSLERHTDWVTDMVLCGNGKLLVSSSNDTTVKVWSIERDNKHGYLDSLNLHTDYVSCLAYAPLAEKVV-SASFDRNIFVYDVNS 166          
BLAST of DN617887 vs. ExPASy Swiss-Prot
Match: LIS1_DICDI (Lissencephaly-1 homolog OS=Dictyostelium discoideum GN=lis1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.356e-11
Identity = 40/106 (37.74%), Postives = 53/106 (50.00%), Query Frame = 3
Query:  222 HCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGDNTLV-SCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKN 536
            H   ++C+    S      D L + SRD T+K W  A   G C  T   H DWV    +  D + + SCS+D T+KTWN    G C+ T R+HS  V CLA +  N
Sbjct:  189 HDHNVSCVRFTPSG-----DQLISSSRDKTIKVWEAA--TGYCIKTLVGHEDWVRKITVSEDGSCIASCSNDQTIKTWNIVK-GECLATYREHSHVVECLAFSTAN 286          
BLAST of DN617887 vs. ExPASy Swiss-Prot
Match: WDR5_XENTR (WD repeat-containing protein 5 OS=Xenopus tropicalis GN=wdr5 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.250e-11
Identity = 43/117 (36.75%), Postives = 58/117 (49.57%), Query Frame = 3
Query:  246 AVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGD-NTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIE 593
            AV     S   ++L + S D  +K W   D  G    T   H   ++D     D N LVS S D TLK W+ SS G C++TL+ HS+YV C       SN++ SG     V IWD++
Sbjct:   47 AVSSVKFSPNGEWLASSSADKLIKIWGAYD--GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFC-CNFNPQSNLIVSGSFDESVRIWDVK 159          
BLAST of DN617887 vs. ExPASy Swiss-Prot
Match: WDR5_RAT (WD repeat-containing protein 5 OS=Rattus norvegicus GN=Wdr5 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.250e-11
Identity = 43/117 (36.75%), Postives = 58/117 (49.57%), Query Frame = 3
Query:  246 AVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGD-NTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIE 593
            AV     S   ++L + S D  +K W   D  G    T   H   ++D     D N LVS S D TLK W+ SS G C++TL+ HS+YV C       SN++ SG     V IWD++
Sbjct:   47 AVSSVKFSPNGEWLASSSADKLIKIWGAYD--GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFC-CNFNPQSNLIVSGSFDESVRIWDVK 159          
The following BLAST results are available for this feature:
BLAST of DN617887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
WDR48_DICDI2.200e-1735.44WD repeat-containing protein 48 homolog OS=Dictyos... [more]
YA4E_SCHPO4.902e-1735.33Uncharacterized WD repeat-containing protein C31A2... [more]
WDR48_CULQU1.092e-1635.10WD repeat-containing protein 48 homolog OS=Culex q... [more]
WDR48_BRUMA2.433e-1634.39WD repeat-containing protein 48 homolog OS=Brugia ... [more]
WDR48_CAEEL5.609e-1330.00WD repeat-containing protein 48 homolog OS=Caenorh... [more]
NUDF_ASPOR1.249e-1238.32Nuclear distribution protein nudF homolog OS=Asper... [more]
WDR48_CAEBR2.784e-1228.24WD repeat-containing protein 48 homolog OS=Caenorh... [more]
LIS1_DICDI2.356e-1137.74Lissencephaly-1 homolog OS=Dictyostelium discoideu... [more]
WDR5_XENTR5.250e-1136.75WD repeat-containing protein 5 OS=Xenopus tropical... [more]
WDR5_RAT5.250e-1136.75WD repeat-containing protein 5 OS=Rattus norvegicu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01N04_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001N04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617887 ID=DN617887; Name=DN617887; organism=Citrus sinensis; type=EST; length=630bp
ATTTTCTTCATTAATTAAAAAAATTCCCAGTCTCTTCTCCATTTTCTTTT
TTGAAACAAAATTCTTAGGGTTTACTTCAATTTCTCCTTCGATTGATTTC
TTAAACTACTGGGGTTGTTGCAATGCACCGCGTGGGTAGTGCGGGTAACA
ATGCCAATTCTACTCGCCCCCGTAAAGAGAAGAGGTTGACATATGTGTTG
AATAATTCTGATGACACCAAGCATTGTGCTGGCATAAATTGTTTGGCTGT
ATTGAAGTCATCTGTATCCAATGGGGTTGATTACCTGTTCACTGGCAGTC
GTGATGGCACATTAAAGAGATGGTCACTTGCTGATGATGTTGGAAGTTGC
TCTGCAACATTTGAGTCGCATGTTGACTGGGTAAATGACGCTGTCCTTGT
AGGTGATAATACTCTTGTTTCCTGCTCTTCAGACACCACCCTCAAGACAT
GGAATTGCTCGTCTGATGGAACTTGTATAAGGACTCTCCGTCAGCACTCT
GACTATGTTACTTGTCTCGCTGCAGCAGAAAAAAATAGCAATATTGTTGC
ATCTGGTGGTCTTGGTGCGGAGGTTTTCATATGGGATATAGAAGCTGCCC
TTGCTCCATCGAAATCAGGTGATGCCATGG
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