DN617887

Overview
NameDN617887
Unique NameDN617887
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DN617887 vs. ExPASy Swiss-Prot
Match: WDR5_MOUSE (WD repeat-containing protein 5 OS=Mus musculus GN=Wdr5 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.250e-11
Identity = 43/117 (36.75%), Postives = 58/117 (49.57%), Query Frame = 3 
Query:  246 AVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGD-NTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIE 593
            AV     S   ++L + S D  +K W   D  G    T   H   ++D     D N LVS S D TLK W+ SS G C++TL+ HS+YV C       SN++ SG     V IWD++
Sbjct:   47 AVSSVKFSPNGEWLASSSADKLIKIWGAYD--GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFC-CNFNPQSNLIVSGSFDESVRIWDVK 159
[Close]
BLAST of DN617887 vs. ExPASy Swiss-Prot
Match: WDR5_HUMAN (WD repeat-containing protein 5 OS=Homo sapiens GN=WDR5 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.250e-11
Identity = 43/117 (36.75%), Postives = 58/117 (49.57%), Query Frame = 3 
Query:  246 AVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGD-NTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIE 593
            AV     S   ++L + S D  +K W   D  G    T   H   ++D     D N LVS S D TLK W+ SS G C++TL+ HS+YV C       SN++ SG     V IWD++
Sbjct:   47 AVSSVKFSPNGEWLASSSADKLIKIWGAYD--GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFC-CNFNPQSNLIVSGSFDESVRIWDVK 159
[Close]
BLAST of DN617887 vs. ExPASy Swiss-Prot
Match: WDR5_BOVIN (WD repeat-containing protein 5 OS=Bos taurus GN=WDR5 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.250e-11
Identity = 43/117 (36.75%), Postives = 58/117 (49.57%), Query Frame = 3 
Query:  246 AVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGSCSATFESHVDWVNDAVLVGD-NTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIE 593
            AV     S   ++L + S D  +K W   D  G    T   H   ++D     D N LVS S D TLK W+ SS G C++TL+ HS+YV C       SN++ SG     V IWD++
Sbjct:   47 AVSSVKFSPNGEWLASSSADKLIKIWGAYD--GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFC-CNFNPQSNLIVSGSFDESVRIWDVK 159
The following BLAST results are available for this feature:
BLAST of DN617887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
WDR5_MOUSE5.250e-1136.75WD repeat-containing protein 5 OS=Mus musculus GN=... [more]
WDR5_HUMAN5.250e-1136.75WD repeat-containing protein 5 OS=Homo sapiens GN=... [more]
WDR5_BOVIN5.250e-1136.75WD repeat-containing protein 5 OS=Bos taurus GN=WD... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01N04_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001N04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617887 ID=DN617887; Name=DN617887; organism=Citrus sinensis; type=EST; length=630bp
ATTTTCTTCATTAATTAAAAAAATTCCCAGTCTCTTCTCCATTTTCTTTT
TTGAAACAAAATTCTTAGGGTTTACTTCAATTTCTCCTTCGATTGATTTC
TTAAACTACTGGGGTTGTTGCAATGCACCGCGTGGGTAGTGCGGGTAACA
ATGCCAATTCTACTCGCCCCCGTAAAGAGAAGAGGTTGACATATGTGTTG
AATAATTCTGATGACACCAAGCATTGTGCTGGCATAAATTGTTTGGCTGT
ATTGAAGTCATCTGTATCCAATGGGGTTGATTACCTGTTCACTGGCAGTC
GTGATGGCACATTAAAGAGATGGTCACTTGCTGATGATGTTGGAAGTTGC
TCTGCAACATTTGAGTCGCATGTTGACTGGGTAAATGACGCTGTCCTTGT
AGGTGATAATACTCTTGTTTCCTGCTCTTCAGACACCACCCTCAAGACAT
GGAATTGCTCGTCTGATGGAACTTGTATAAGGACTCTCCGTCAGCACTCT
GACTATGTTACTTGTCTCGCTGCAGCAGAAAAAAATAGCAATATTGTTGC
ATCTGGTGGTCTTGGTGCGGAGGTTTTCATATGGGATATAGAAGCTGCCC
TTGCTCCATCGAAATCAGGTGATGCCATGG
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