DN617879

Overview
NameDN617879
Unique NameDN617879
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length605
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617879_ssr79 microsatellite DN617879_ssr79:79..90. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6287 contig Csv1_Contig6287:1261..1865. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617879 vs. ExPASy Swiss-Prot
Match: CATD_CANFA (Cathepsin D OS=Canis familiaris GN=CTSD PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.265e-23
Identity = 46/93 (49.46%), Postives = 66/93 (70.97%), Query Frame = -3
Query:  229 SLPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 507
            ++P   GE +I C ++ T+P+V+  +G K++ LS E Y LK  +G   +C+SGFM  D+PPP GPLWILGDVF+G Y+TVFD  + R+G A+A
Sbjct:  315 AVPLIQGEYMIPCEKVSTLPDVTLKLGGKLYKLSSEDYTLKVSQGGKTICLSGFMGMDIPPPGGPLWILGDVFIGCYYTVFDRDQNRVGLAQA 407          
BLAST of DN617879 vs. ExPASy Swiss-Prot
Match: CATD_RAT (Cathepsin D OS=Rattus norvegicus GN=Ctsd PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 9.501e-23
Identity = 46/94 (48.94%), Postives = 67/94 (71.28%), Query Frame = -3
Query:  226 SLPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 507
            ++P   GE +I C ++ ++P ++F +G + + L PE+YILK  +    +C+SGFM  D+PPP GPLWILGDVF+G Y+TVFD    R+GFA+AA
Sbjct:  312 AVPLIQGEYMIPCEKVSSLPIITFKLGGQNYELHPEKYILKVSQAGKTICLSGFMGMDIPPPSGPLWILGDVFIGCYYTVFDREYNRVGFAKAA 405          
BLAST of DN617879 vs. ExPASy Swiss-Prot
Match: CATD_BOVIN (Cathepsin D OS=Bos taurus GN=CTSD PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 9.501e-23
Identity = 48/94 (51.06%), Postives = 65/94 (69.15%), Query Frame = -3
Query:  226 SLPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 507
            ++P   GE +I C ++ ++P V+  +G K + LSPE Y LK  +    VC+SGFM  D+PPP GPLWILGDVF+G Y+TVFD  + R+G AEAA
Sbjct:  295 AVPLIQGEYMIPCEKVSSLPEVTVKLGGKDYALSPEDYALKVSQAETTVCLSGFMGMDIPPPGGPLWILGDVFIGRYYTVFDRDQNRVGLAEAA 388          
BLAST of DN617879 vs. ExPASy Swiss-Prot
Match: CATD_MOUSE (Cathepsin D OS=Mus musculus GN=Ctsd PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.241e-22
Identity = 46/93 (49.46%), Postives = 64/93 (68.82%), Query Frame = -3
Query:  229 SLPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 507
            ++P   GE +I C ++ ++P V   +G K + L P++YILK  +G   +C+SGFM  D+PPP GPLWILGDVF+G Y+TVFD    R+GFA A
Sbjct:  315 AVPLIQGEYMIPCEKVSSLPTVYLKLGGKNYELHPDKYILKVSQGGKTICLSGFMGMDIPPPSGPLWILGDVFIGSYYTVFDRDNNRVGFANA 407          
BLAST of DN617879 vs. ExPASy Swiss-Prot
Match: ASP3_CAEEL (Aspartic protease 3 OS=Caenorhabditis elegans GN=asp-3 PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.161e-20
Identity = 45/102 (44.12%), Postives = 66/102 (64.71%), Query Frame = -3
Query:  235 VLSYINELCDSLPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIA-EVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFA 537
            V+  I      +P   GE  ++C +IP++PN++F +G + F+L  + YIL+   G     C+SGFM  D+P P GPLWILGDVF+G +++VFD G  R+GFA
Sbjct:  291 VIKKIQHKIGGIPLFNGEYEVECSKIPSLPNITFNLGGQNFDLQGKDYILQMSNGNGGSTCLSGFMGMDIPAPAGPLWILGDVFIGRFYSVFDHGNKRVGFA 392          
BLAST of DN617879 vs. ExPASy Swiss-Prot
Match: NAPSA_HUMAN (Napsin-A OS=Homo sapiens GN=NAPSA PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.284e-19
Identity = 46/96 (47.92%), Postives = 59/96 (61.46%), Query Frame = -3
Query:  229 LPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKL----RIGFAEA 504
            +P   GE II C  IP +P VSF +G   FNL+   Y+++T      +C+SGF A D+PPP GP WILGDVF+G Y  VFD G +    R+G A A
Sbjct:  306 IPLLAGEYIILCSEIPKLPAVSFLLGGVWFNLTAHDYVIQTTRNGVRLCLSGFQALDVPPPAGPFWILGDVFLGTYVAVFDRGDMKSSARVGLARA 401          
BLAST of DN617879 vs. ExPASy Swiss-Prot
Match: CATE_RANCA (Cathepsin E OS=Rana catesbeiana GN=CTSE PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.284e-19
Identity = 48/103 (46.60%), Postives = 66/103 (64.08%), Query Frame = -3
Query:  235 EKVLSYINELCDSLPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFA 543
            E++ +YI      + N  GE  + C  +  MP+V+FTI    ++L+PEQY+L+ G G    C SGF   D+ PP GPLWILGDVF+G Y++VFD G  R+GFA
Sbjct:  291 EQLQNYIG-----VTNTNGEYGVSCSTLSLMPSVTFTINGLDYSLTPEQYMLEDGGGY---CSSGFQGLDISPPSGPLWILGDVFIGQYYSVFDRGNNRVGFA 385          
BLAST of DN617879 vs. ExPASy Swiss-Prot
Match: CATEA_XENLA (Cathepsin E-A OS=Xenopus laevis GN=ctse-A PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.323e-19
Identity = 43/85 (50.59%), Postives = 57/85 (67.06%), Query Frame = -3
Query:  235 GESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFA 489
            G+  +DC  +  MP V+FTI    + ++P+QY L+ G G   VC SGF   D+PPP GPLWILGDVF+G Y++VFD G  R+G A
Sbjct:  304 GDYEVDCSVLNEMPTVTFTINGIGYQMTPQQYTLQDGGG---VCSSGFQGLDIPPPAGPLWILGDVFIGQYYSVFDRGNNRVGLA 385          
BLAST of DN617879 vs. ExPASy Swiss-Prot
Match: CATD_CHICK (Cathepsin D OS=Gallus gallus GN=CTSD PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.420e-18
Identity = 40/86 (46.51%), Postives = 57/86 (66.28%), Query Frame = -3
Query:  232 GESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAE 489
            G+ +I C +I ++P V+  +G K + L+ EQY+ K       +C+SGF   D+PPP GPLWILGDVF+G Y+TVFD     +GFA+
Sbjct:  311 GQYVISCDKISSLPVVTLMLGGKPYQLTGEQYVFKVSAQGETICLSGFSGLDVPPPGGPLWILGDVFIGPYYTVFDRDNDSVGFAK 396          
BLAST of DN617879 vs. ExPASy Swiss-Prot
Match: NAPSA_MOUSE (Napsin-A OS=Mus musculus GN=Napsa PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.395e-18
Identity = 41/95 (43.16%), Postives = 57/95 (60.00%), Query Frame = -3
Query:  241 INELCDSLPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIG 525
            +N+     P   G+  I C + PT+P VSF +G   FNL+ + Y++K  +    +C+ GF A D+P P GPLWILGDVF+G Y  VFD G   +G
Sbjct:  294 LNKAIGGYPFLNGQYFIQCSKTPTLPPVSFHLGGVWFNLTGQDYVIKILQSDVGLCLLGFQALDIPKPAGPLWILGDVFLGPYVAVFDRGDKNVG 388          
The following BLAST results are available for this feature:
BLAST of DN617879 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CATD_CANFA4.265e-2349.46Cathepsin D OS=Canis familiaris GN=CTSD PE=2 SV=1[more]
CATD_RAT9.501e-2348.94Cathepsin D OS=Rattus norvegicus GN=Ctsd PE=1 SV=1[more]
CATD_BOVIN9.501e-2351.06Cathepsin D OS=Bos taurus GN=CTSD PE=1 SV=2[more]
CATD_MOUSE1.241e-2249.46Cathepsin D OS=Mus musculus GN=Ctsd PE=1 SV=1[more]
ASP3_CAEEL1.161e-2044.12Aspartic protease 3 OS=Caenorhabditis elegans GN=a... [more]
NAPSA_HUMAN1.284e-1947.92Napsin-A OS=Homo sapiens GN=NAPSA PE=1 SV=1[more]
CATE_RANCA1.284e-1946.60Cathepsin E OS=Rana catesbeiana GN=CTSE PE=1 SV=1[more]
CATEA_XENLA8.323e-1950.59Cathepsin E-A OS=Xenopus laevis GN=ctse-A PE=1 SV=... [more]
CATD_CHICK1.420e-1846.51Cathepsin D OS=Gallus gallus GN=CTSD PE=1 SV=1[more]
NAPSA_MOUSE5.395e-1843.16Napsin-A OS=Mus musculus GN=Napsa PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01M24_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001M24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617879 ID=DN617879; Name=DN617879; organism=Citrus sinensis; type=EST; length=605bp
GAATATCATAAAATTGAAGTACTTTAAACATAGGATGATAGGATTTTACA
TAAGTATATATCAGCATATCATCTGTGGTGATGATGATGATAGTTATGCA
TAAAAGCATACTGATCGTTTTACAGTACATGAAAACCATAATCTACATTC
TACAACCCTCCTCCTCATATGAGCAGGTGATGATCGCTGCTACTACATAA
AAACTTGACAGTAAGTAGATCATTACGCAGCCTCAGCAAAGCCGATCCGG
AGCTTACCAGAGTCGAAAACAGTGTGATAAACCCCCATGAATACATCTCC
CAGAATCCACAGAGGACCCCTTGGAGGAGGCAGGTCGAAAGCCATGAAGC
CACTGATGCAGACTTCTGCAATCCCTTCTCCGGTTTTCAGAATATACTGC
TCTGGAGAGAGGTTGAAAATTTTGTCTCCGATGGTGAATGAAACATTTGG
CATGGTTGGAATGCGACCACAGTCAATAATTGATTCTCCCATCGGATTTG
GCAGGCTGTCGCAGAGCTCATTTATATAACTGAGTACTTTCTCCTTTGTT
TGCTTTTGTTTTAGCTGATTCTGGACCCAAACACGGTCATTTCACAAGCA
CTGCA
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