DN617879

Overview
NameDN617879
Unique NameDN617879
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length605
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617879_ssr79 microsatellite DN617879_ssr79:79..90. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6287 contig Csv1_Contig6287:1261..1865. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617879 vs. ExPASy Swiss-Prot
Match: CATE_MOUSE (Cathepsin E OS=Mus musculus GN=Ctse PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.203e-18
Identity = 41/87 (47.13%), Postives = 55/87 (63.22%), Query Frame = -3
Query:  229 GESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 489
            GE  +DC  + TMPNV+F I +  + L+P  YIL       + C SGF   D+PPP GPLWILGDVF+  +++VFD G  ++G A A
Sbjct:  309 GEYAVDCATLDTMPNVTFLINEVSYTLNPTDYILPDLVDGMQFCGSGFQGLDIPPPAGPLWILGDVFIRQFYSVFDRGNNQVGLAPA 395          
BLAST of DN617879 vs. ExPASy Swiss-Prot
Match: CATEB_XENLA (Cathepsin E-B OS=Xenopus laevis GN=ctse-B PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.965e-17
Identity = 40/85 (47.06%), Postives = 56/85 (65.88%), Query Frame = -3
Query:  235 GESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFA 489
            G+  +DC  +  MP ++FTI    + ++P+QY L+  +G   VC SGF   D+ PP GPLWILGDVF+G Y++VFD G  R+G A
Sbjct:  304 GDYEVDCTVLNKMPTMTFTINGIGYQMTPQQYTLQDDDG---VCSSGFQGLDISPPAGPLWILGDVFIGQYYSVFDRGNNRVGLA 385          
BLAST of DN617879 vs. ExPASy Swiss-Prot
Match: CATD_SHEEP (Cathepsin D (Fragment) OS=Ovis aries GN=CTSD PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.791e-17
Identity = 37/81 (45.68%), Postives = 54/81 (66.67%), Query Frame = -3
Query:  283 INELCDSLPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMG 525
            +++   ++P   GE +I C ++ ++P V+  +G K + LSPE Y LK  +    VC+SGFM  D+PPP GPLWILGDVF+G
Sbjct:  284 LHKAIGAVPLIQGEYMIPCEKVSSLPQVTLKLGGKDYTLSPEDYTLKVSQAGTTVCLSGFMGMDIPPPGGPLWILGDVFIG 364          
BLAST of DN617879 vs. ExPASy Swiss-Prot
Match: CATE_RAT (Cathepsin E OS=Rattus norvegicus GN=Ctse PE=1 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 6.595e-16
Identity = 40/87 (45.98%), Postives = 52/87 (59.77%), Query Frame = -3
Query:  229 GESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 489
            GE  +DC  +  MPNV+F I    + LSP  YIL       + C SGF   D+ PP GPLWILGDVF+  +++VFD G  ++G A A
Sbjct:  310 GEYAVDCATLNMMPNVTFLINGVSYTLSPTAYILPDLVDGMQFCGSGFQGLDIQPPAGPLWILGDVFIRKFYSVFDRGNNQVGLAPA 396          
BLAST of DN617879 vs. ExPASy Swiss-Prot
Match: PEPA_RHIFE (Pepsin A OS=Rhinolophus ferrumequinum GN=PGA PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.613e-16
Identity = 40/91 (43.96%), Postives = 53/91 (58.24%), Query Frame = -3
Query:  226 NPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 498
            N  GE ++ C  I T+PN+ FTI    + L P  Y+L++ +G    C SGF   D+P   G LWILGDVF+  Y TVFD G  ++G A  A
Sbjct:  300 NANGEMVVSCSAINTLPNIVFTINGVQYPLPPSAYVLQSQQG----CTSGFQGMDIPTSSGELWILGDVFIRQYFTVFDRGNNQVGLAPVA 386          
BLAST of DN617879 vs. ExPASy Swiss-Prot
Match: CATE_HUMAN (Cathepsin E OS=Homo sapiens GN=CTSE PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.125e-15
Identity = 39/87 (44.83%), Postives = 52/87 (59.77%), Query Frame = -3
Query:  229 GESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 489
            GE  ++C  +  MP+V+FTI    + LSP  Y L       + C SGF   D+ PP GPLWILGDVF+  +++VFD G  R+G A A
Sbjct:  313 GEYAVECANLNVMPDVTFTINGVPYTLSPTAYTLLDFVDGMQFCSSGFQGLDIHPPAGPLWILGDVFIRQFYSVFDRGNNRVGLAPA 399          
BLAST of DN617879 vs. ExPASy Swiss-Prot
Match: RENI_CANFA (Renin OS=Canis familiaris GN=REN PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.244e-14
Identity = 32/86 (37.21%), Postives = 55/86 (63.95%), Query Frame = -3
Query:  229 ESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 486
            E +++C ++PT+P++SF +G + + L+ + Y+L+   G  ++C       D+PPP GP+W+LG  F+  ++T FD    RIGFA A
Sbjct:  317 EYVVNCNQVPTLPDISFHLGGRAYTLTSKDYVLQDPYGNEDLCTLALHGLDVPPPTGPVWVLGASFIRKFYTEFDRHNNRIGFALA 402          
BLAST of DN617879 vs. ExPASy Swiss-Prot
Match: RENI2_MOUSE (Renin-2 OS=Mus musculus GN=Ren2 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.244e-14
Identity = 33/86 (38.37%), Postives = 53/86 (61.63%), Query Frame = -3
Query:  229 ESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 486
            E ++ C ++PT+P++SF +G + + LS   Y+L+      ++C     A D+PPP GP+W+LG  F+  ++T FD    RIGFA A
Sbjct:  315 EYVVSCSQVPTLPDISFNLGGRAYTLSSTDYVLQYPNRRDKLCTVALHAMDIPPPTGPVWVLGATFIRKFYTEFDRHNNRIGFALA 400          
BLAST of DN617879 vs. ExPASy Swiss-Prot
Match: RENI1_MOUSE (Renin-1 OS=Mus musculus GN=Ren1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.244e-14
Identity = 33/86 (38.37%), Postives = 54/86 (62.79%), Query Frame = -3
Query:  229 ESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 486
            E +++C ++PT+P++SF +G + + LS   Y+L+      ++C     A D+PPP GP+W+LG  F+  ++T FD    RIGFA A
Sbjct:  316 EYVVNCSQVPTLPDISFDLGGRAYTLSSTDYVLQYPNRRDKLCTLALHAMDIPPPTGPVWVLGATFIRKFYTEFDRHNNRIGFALA 401          
BLAST of DN617879 vs. ExPASy Swiss-Prot
Match: CATD_DICDI (Cathepsin D OS=Dictyostelium discoideum GN=ctsD PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.244e-14
Identity = 40/88 (45.45%), Postives = 56/88 (63.64%), Query Frame = -3
Query:  229 GESII-DCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 489
            GE +  DC  I T+PNV+ T+  + F L+P++Y+L+  E     C+SGFM  +L    G  WILGDVF+  Y+TVFD G  ++GFA A
Sbjct:  295 GEGVFSDCSVINTLPNVTITVAGREFVLTPKEYVLEVTEFGKTECLSGFMGIEL--NMGNFWILGDVFISAYYTVFDFGNKQVGFATA 380          
The following BLAST results are available for this feature:
BLAST of DN617879 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CATE_MOUSE9.203e-1847.13Cathepsin E OS=Mus musculus GN=Ctse PE=1 SV=1[more]
CATEB_XENLA5.965e-1747.06Cathepsin E-B OS=Xenopus laevis GN=ctse-B PE=2 SV=... [more]
CATD_SHEEP7.791e-1745.68Cathepsin D (Fragment) OS=Ovis aries GN=CTSD PE=1 ... [more]
CATE_RAT6.595e-1645.98Cathepsin E OS=Rattus norvegicus GN=Ctse PE=1 SV=3[more]
PEPA_RHIFE8.613e-1643.96Pepsin A OS=Rhinolophus ferrumequinum GN=PGA PE=2 ... [more]
CATE_HUMAN1.125e-1544.83Cathepsin E OS=Homo sapiens GN=CTSE PE=1 SV=2[more]
RENI_CANFA1.244e-1437.21Renin OS=Canis familiaris GN=REN PE=2 SV=1[more]
RENI2_MOUSE1.244e-1438.37Renin-2 OS=Mus musculus GN=Ren2 PE=1 SV=1[more]
RENI1_MOUSE1.244e-1438.37Renin-1 OS=Mus musculus GN=Ren1 PE=1 SV=1[more]
CATD_DICDI1.244e-1445.45Cathepsin D OS=Dictyostelium discoideum GN=ctsD PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01M24_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001M24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617879 ID=DN617879; Name=DN617879; organism=Citrus sinensis; type=EST; length=605bp
GAATATCATAAAATTGAAGTACTTTAAACATAGGATGATAGGATTTTACA
TAAGTATATATCAGCATATCATCTGTGGTGATGATGATGATAGTTATGCA
TAAAAGCATACTGATCGTTTTACAGTACATGAAAACCATAATCTACATTC
TACAACCCTCCTCCTCATATGAGCAGGTGATGATCGCTGCTACTACATAA
AAACTTGACAGTAAGTAGATCATTACGCAGCCTCAGCAAAGCCGATCCGG
AGCTTACCAGAGTCGAAAACAGTGTGATAAACCCCCATGAATACATCTCC
CAGAATCCACAGAGGACCCCTTGGAGGAGGCAGGTCGAAAGCCATGAAGC
CACTGATGCAGACTTCTGCAATCCCTTCTCCGGTTTTCAGAATATACTGC
TCTGGAGAGAGGTTGAAAATTTTGTCTCCGATGGTGAATGAAACATTTGG
CATGGTTGGAATGCGACCACAGTCAATAATTGATTCTCCCATCGGATTTG
GCAGGCTGTCGCAGAGCTCATTTATATAACTGAGTACTTTCTCCTTTGTT
TGCTTTTGTTTTAGCTGATTCTGGACCCAAACACGGTCATTTCACAAGCA
CTGCA
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