DN617879

Overview
NameDN617879
Unique NameDN617879
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length605
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617879_ssr79 microsatellite DN617879_ssr79:79..90. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6287 contig Csv1_Contig6287:1261..1865. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617879 vs. ExPASy Swiss-Prot
Match: RENI_CALJA (Renin OS=Callithrix jacchus GN=REN PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.001e-13
Identity = 32/84 (38.10%), Postives = 48/84 (57.14%), Query Frame = -3
Query:  229 IIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 480
            ++ C   PT+P++SF +G K + L+   Y+ +      ++C     A D+PPP GP W LG  F+  ++T FD G  RIGFA A
Sbjct:  316 VVKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRGNNRIGFALA 399          
BLAST of DN617879 vs. ExPASy Swiss-Prot
Match: PEPA2_MACFU (Pepsin A-2/A-3 OS=Macaca fuscata fuscata PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.226e-13
Identity = 37/91 (40.66%), Postives = 51/91 (56.04%), Query Frame = -3
Query:  226 NPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 498
            N  GE ++ C  I ++P++ FTI    + + P  YIL++       CISGF   D+P   G LWILGDVF+  Y TVFD    ++G A  A
Sbjct:  302 NSDGEMVVSCSAISSLPDIVFTINGIQYPVPPSAYILQSQGS----CISGFQGMDVPTESGELWILGDVFIRQYFTVFDRANNQVGLAPVA 388          
BLAST of DN617879 vs. ExPASy Swiss-Prot
Match: PEPA_MACMU (Pepsin A OS=Macaca mulatta GN=PGA PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.825e-13
Identity = 37/91 (40.66%), Postives = 50/91 (54.95%), Query Frame = -3
Query:  226 NPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 498
            N  GE ++ C  I ++P++ FTI    + L P  YIL++       C SGF   D+P   G LWILGDVF+  Y TVFD    ++G A  A
Sbjct:  302 NSDGEMVVSCSAISSLPDIVFTINGVQYPLPPSAYILQSQGS----CTSGFQGMDVPTESGELWILGDVFIRQYFTVFDRANNQVGLAPVA 388          
BLAST of DN617879 vs. ExPASy Swiss-Prot
Match: PEPA_BOVIN (Pepsin A OS=Bos taurus GN=PGA PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 6.825e-13
Identity = 42/104 (40.38%), Postives = 56/104 (53.85%), Query Frame = -3
Query:  226 VLSYINELCDSLPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 537
            + SYI    DS     GE +I C  I ++P++ FTI    + + P  YIL++      +C SGF   D+    G LWILGDVF+  Y TVFD G  +IG A  A
Sbjct:  277 IQSYIGASEDS----SGEVVISCSSIDSLPDIVFTINGVQYPVPPSAYILQSNG----ICSSGFEGMDISTSSGDLWILGDVFIRQYFTVFDRGNNQIGLAPVA 372          
BLAST of DN617879 vs. ExPASy Swiss-Prot
Match: PEPA4_MACFU (Pepsin A-4 OS=Macaca fuscata fuscata GN=PGA PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.825e-13
Identity = 37/91 (40.66%), Postives = 50/91 (54.95%), Query Frame = -3
Query:  226 NPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 498
            N  GE ++ C  I ++P++ FTI    + L P  YIL++       C SGF   D+P   G LWILGDVF+  Y TVFD    ++G A  A
Sbjct:  302 NSDGEMVVSCSAISSLPDIVFTINGVQYPLPPSAYILQSQGS----CTSGFQGMDVPTESGELWILGDVFIRQYFTVFDRANNQVGLAPVA 388          
BLAST of DN617879 vs. ExPASy Swiss-Prot
Match: CARP_NEUCR (Vacuolar protease A OS=Neurospora crassa GN=pep-4 PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 6.825e-13
Identity = 36/87 (41.38%), Postives = 52/87 (59.77%), Query Frame = -3
Query:  229 GESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 489
            G+  IDCG+  ++ +V+FT+    F L PE YIL+        C+S FM  D+P P GPL ILGD F+  Y++++D G   +G A A
Sbjct:  312 GQFTIDCGKKSSLEDVTFTLAGYNFTLGPEDYILEASGS----CLSTFMGMDMPAPVGPLAILGDAFLRKYYSIYDLGADTVGIATA 394          
BLAST of DN617879 vs. ExPASy Swiss-Prot
Match: PEPA_SORUN (Pepsin A OS=Sorex unguiculatus GN=PGA PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.913e-13
Identity = 37/91 (40.66%), Postives = 49/91 (53.85%), Query Frame = -3
Query:  226 NPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 498
            N  G+  + C  I  +P++ FTI    + L    YIL++ EG    C SGF   D+P   G LWILGDVF+  Y TVFD    ++G A  A
Sbjct:  301 NSQGQMAVSCSSIKNLPDIVFTINGIQYPLPASAYILQSQEG----CSSGFQGMDIPTSSGELWILGDVFIRQYFTVFDRANNQVGLAPVA 387          
BLAST of DN617879 vs. ExPASy Swiss-Prot
Match: PEPA_HUMAN (Pepsin A OS=Homo sapiens GN=PGA3 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.913e-13
Identity = 38/91 (41.76%), Postives = 53/91 (58.24%), Query Frame = -3
Query:  226 NPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 498
            N  G+ ++ C  I ++P++ FTI    + + P  YIL++ EG    CISGF   +LP   G LWILGDVF+  Y TVFD    ++G A  A
Sbjct:  302 NSDGDMVVSCSAISSLPDIVFTINGVQYPVPPSAYILQS-EGS---CISGFQGMNLPTESGELWILGDVFIRQYFTVFDRANNQVGLAPVA 388          
BLAST of DN617879 vs. ExPASy Swiss-Prot
Match: RENI_SHEEP (Renin OS=Ovis aries GN=REN PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.986e-12
Identity = 32/86 (37.21%), Postives = 51/86 (59.30%), Query Frame = -3
Query:  229 ESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 486
            E +++C ++PT+P++SF +G K + L+   Y+L+        C       D+PPP GP+W+LG  F+  ++T FD    RIGFA A
Sbjct:  315 EYVVNCNQMPTLPDISFHLGGKAYTLTSADYVLQDPYNNIS-CTLALHGMDIPPPTGPVWVLGATFIRKFYTEFDRRNNRIGFALA 399          
BLAST of DN617879 vs. ExPASy Swiss-Prot
Match: PEPA1_MACFU (Pepsin A-1 OS=Macaca fuscata fuscata GN=PGA PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.986e-12
Identity = 36/91 (39.56%), Postives = 50/91 (54.95%), Query Frame = -3
Query:  226 NPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 498
            N  GE ++ C  I ++P++ FTI    + + P  YIL++       C SGF   D+P   G LWILGDVF+  Y TVFD    ++G A  A
Sbjct:  302 NSDGEMVVSCSAISSLPDIVFTINGIQYPVPPSAYILQSQGS----CTSGFQGMDVPTESGELWILGDVFIRQYFTVFDRANNQVGLAPVA 388          
The following BLAST results are available for this feature:
BLAST of DN617879 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
RENI_CALJA4.001e-1338.10Renin OS=Callithrix jacchus GN=REN PE=2 SV=1[more]
PEPA2_MACFU5.226e-1340.66Pepsin A-2/A-3 OS=Macaca fuscata fuscata PE=1 SV=1[more]
PEPA_MACMU6.825e-1340.66Pepsin A OS=Macaca mulatta GN=PGA PE=2 SV=1[more]
PEPA_BOVIN6.825e-1340.38Pepsin A OS=Bos taurus GN=PGA PE=1 SV=2[more]
PEPA4_MACFU6.825e-1340.66Pepsin A-4 OS=Macaca fuscata fuscata GN=PGA PE=1 S... [more]
CARP_NEUCR6.825e-1341.38Vacuolar protease A OS=Neurospora crassa GN=pep-4 ... [more]
PEPA_SORUN8.913e-1340.66Pepsin A OS=Sorex unguiculatus GN=PGA PE=2 SV=1[more]
PEPA_HUMAN8.913e-1341.76Pepsin A OS=Homo sapiens GN=PGA3 PE=1 SV=1[more]
RENI_SHEEP1.986e-1237.21Renin OS=Ovis aries GN=REN PE=2 SV=1[more]
PEPA1_MACFU1.986e-1239.56Pepsin A-1 OS=Macaca fuscata fuscata GN=PGA PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01M24_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001M24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617879 ID=DN617879; Name=DN617879; organism=Citrus sinensis; type=EST; length=605bp
GAATATCATAAAATTGAAGTACTTTAAACATAGGATGATAGGATTTTACA
TAAGTATATATCAGCATATCATCTGTGGTGATGATGATGATAGTTATGCA
TAAAAGCATACTGATCGTTTTACAGTACATGAAAACCATAATCTACATTC
TACAACCCTCCTCCTCATATGAGCAGGTGATGATCGCTGCTACTACATAA
AAACTTGACAGTAAGTAGATCATTACGCAGCCTCAGCAAAGCCGATCCGG
AGCTTACCAGAGTCGAAAACAGTGTGATAAACCCCCATGAATACATCTCC
CAGAATCCACAGAGGACCCCTTGGAGGAGGCAGGTCGAAAGCCATGAAGC
CACTGATGCAGACTTCTGCAATCCCTTCTCCGGTTTTCAGAATATACTGC
TCTGGAGAGAGGTTGAAAATTTTGTCTCCGATGGTGAATGAAACATTTGG
CATGGTTGGAATGCGACCACAGTCAATAATTGATTCTCCCATCGGATTTG
GCAGGCTGTCGCAGAGCTCATTTATATAACTGAGTACTTTCTCCTTTGTT
TGCTTTTGTTTTAGCTGATTCTGGACCCAAACACGGTCATTTCACAAGCA
CTGCA
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