DN617879

Overview
NameDN617879
Unique NameDN617879
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length605
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617879_ssr79 microsatellite DN617879_ssr79:79..90. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6287 contig Csv1_Contig6287:1261..1865. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617879 vs. ExPASy Swiss-Prot
Match: RENI_PANTR (Renin OS=Pan troglodytes GN=REN PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.387e-12
Identity = 31/84 (36.90%), Postives = 47/84 (55.95%), Query Frame = -3
Query:  229 IIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 480
            ++ C   PT+P++SF +G K + L+   Y+ +      ++C     A D+PPP GP W LG  F+  ++T FD    RIGFA A
Sbjct:  322 VVKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFALA 405          
BLAST of DN617879 vs. ExPASy Swiss-Prot
Match: RENI_MACMU (Renin OS=Macaca mulatta GN=REN PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.387e-12
Identity = 31/84 (36.90%), Postives = 47/84 (55.95%), Query Frame = -3
Query:  229 IIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 480
            ++ C   PT+P++SF +G K + L+   Y+ +      ++C     A D+PPP GP W LG  F+  ++T FD    RIGFA A
Sbjct:  322 VVKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFALA 405          
BLAST of DN617879 vs. ExPASy Swiss-Prot
Match: RENI_MACFA (Renin OS=Macaca fascicularis GN=REN PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.387e-12
Identity = 31/84 (36.90%), Postives = 47/84 (55.95%), Query Frame = -3
Query:  229 IIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 480
            ++ C   PT+P++SF +G K + L+   Y+ +      ++C     A D+PPP GP W LG  F+  ++T FD    RIGFA A
Sbjct:  322 VVKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFALA 405          
BLAST of DN617879 vs. ExPASy Swiss-Prot
Match: RENI_HUMAN (Renin OS=Homo sapiens GN=REN PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.387e-12
Identity = 31/84 (36.90%), Postives = 47/84 (55.95%), Query Frame = -3
Query:  229 IIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 480
            ++ C   PT+P++SF +G K + L+   Y+ +      ++C     A D+PPP GP W LG  F+  ++T FD    RIGFA A
Sbjct:  322 VVKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFALA 405          
BLAST of DN617879 vs. ExPASy Swiss-Prot
Match: CARP_NANOT (Vacuolar protease A OS=Nannizzia otae (strain CBS 113480) GN=PEP2 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.424e-12
Identity = 34/87 (39.08%), Postives = 53/87 (60.92%), Query Frame = -3
Query:  229 GESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 489
            G+  IDC +  ++P+++FT+    F + P  Y L+    ++  CIS FM  D P P GPL ILGD F+  +++V+D GK  +G A+A
Sbjct:  312 GQYTIDCAKRDSLPDLTFTLSGHNFTIGPYDYTLE----VSGTCISSFMGMDFPEPVGPLAILGDSFLRRWYSVYDLGKGTVGLAKA 394          
BLAST of DN617879 vs. ExPASy Swiss-Prot
Match: PEPC_SORUN (Gastricsin OS=Sorex unguiculatus GN=PGC PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.855e-12
Identity = 38/107 (35.51%), Postives = 57/107 (53.27%), Query Frame = -3
Query:  226 EKVLSYINELCDSLPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRG-PLWILGDVFMGVYHTVFDSGKLRIGFAEAA 543
            ++ LS + +   +  +  G+ +++C  I  +P ++F I    F L P  Y+L         C  G     LP P G PLWILGDVF+  Y++V+D G  R+GFA AA
Sbjct:  287 QQYLSALQQATGAQLDQDGQMVVNCNNIQNLPTLTFVINGVQFPLLPSAYVLNNNG----YCTLGVEPTYLPSPTGQPLWILGDVFLRSYYSVYDMGNNRVGFATAA 389          
BLAST of DN617879 vs. ExPASy Swiss-Prot
Match: PEPA3_RABIT (Pepsin-3 OS=Oryctolagus cuniculus PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.855e-12
Identity = 39/103 (37.86%), Postives = 54/103 (52.43%), Query Frame = -3
Query:  226 LSYINELCDSLPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 534
            +S I     +  N  GE I+ C  + ++PN+ FTI    + +    YIL+  +     CISGF   +L    G LWILGDVF+  Y TVFD    ++G A AA
Sbjct:  289 ISNIQSYIGASENSDGEMIVSCSSMYSLPNIVFTINGVQYPVPASAYILEEDDA----CISGFEGMNLDTYTGELWILGDVFIRQYFTVFDRANNQLGLAAAA 387          
BLAST of DN617879 vs. ExPASy Swiss-Prot
Match: CATE_CAVPO (Cathepsin E OS=Cavia porcellus GN=CTSE PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.855e-12
Identity = 33/83 (39.76%), Postives = 47/83 (56.63%), Query Frame = -3
Query:  229 IDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 477
            + C  +  M +V+F I    + L+P  Y L       +VC +GF   ++ PP GPLWILGDVF+  ++ VFD G  R+G A A
Sbjct:  307 VQCANLNMMLDVTFIINGVPYTLNPTAYTLLDFVDGMQVCSTGFEGLEIQPPAGPLWILGDVFIRQFYAVFDRGNNRVGLAPA 389          
BLAST of DN617879 vs. ExPASy Swiss-Prot
Match: PEPC_RABIT (Gastricsin OS=Oryctolagus cuniculus GN=PGC PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.681e-11
Identity = 41/107 (38.32%), Postives = 56/107 (52.34%), Query Frame = -3
Query:  226 EKVLSYINELCDSLPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRG-PLWILGDVFMGVYHTVFDSGKLRIGFAEAA 543
            ++ +S + E   +  N  GE ++DC    ++P  +F I    F LSP  YIL T       C+ G  A  L    G PLWILGDVF+  Y++VFD    R+GFA  A
Sbjct:  286 QEYMSDLLEATGAQENEYGEFLVDCDSTESLPTFTFVINGVEFPLSPSAYILNTDGQ----CMVGVEATYLSSQDGEPLWILGDVFLRAYYSVFDMANNRVGFAALA 388          
BLAST of DN617879 vs. ExPASy Swiss-Prot
Match: PEPC_SUNMU (Gastricsin OS=Suncus murinus GN=PGC PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.867e-11
Identity = 37/107 (34.58%), Postives = 57/107 (53.27%), Query Frame = -3
Query:  226 EKVLSYINELCDSLPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRG-PLWILGDVFMGVYHTVFDSGKLRIGFAEAA 543
            ++ +S + +   +  +  G+  ++C  I ++P ++F I    F L P  Y+L T       C  G     LP   G PLWILGDVF+  Y++V+D G  R+GFA AA
Sbjct:  287 QQFMSALQQATGAQQDQYGQLAVNCNSIQSLPTLTFIINGVQFPLPPSAYVLNTNG----YCFLGVEPTYLPSQNGQPLWILGDVFLRSYYSVYDMGNNRVGFATAA 389          
The following BLAST results are available for this feature:
BLAST of DN617879 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
RENI_PANTR3.387e-1236.90Renin OS=Pan troglodytes GN=REN PE=3 SV=1[more]
RENI_MACMU3.387e-1236.90Renin OS=Macaca mulatta GN=REN PE=2 SV=2[more]
RENI_MACFA3.387e-1236.90Renin OS=Macaca fascicularis GN=REN PE=2 SV=1[more]
RENI_HUMAN3.387e-1236.90Renin OS=Homo sapiens GN=REN PE=1 SV=1[more]
CARP_NANOT4.424e-1239.08Vacuolar protease A OS=Nannizzia otae (strain CBS ... [more]
PEPC_SORUN9.855e-1235.51Gastricsin OS=Sorex unguiculatus GN=PGC PE=2 SV=1[more]
PEPA3_RABIT9.855e-1237.86Pepsin-3 OS=Oryctolagus cuniculus PE=2 SV=1[more]
CATE_CAVPO9.855e-1239.76Cathepsin E OS=Cavia porcellus GN=CTSE PE=1 SV=1[more]
PEPC_RABIT1.681e-1138.32Gastricsin OS=Oryctolagus cuniculus GN=PGC PE=2 SV... [more]
PEPC_SUNMU2.867e-1134.58Gastricsin OS=Suncus murinus GN=PGC PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01M24_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001M24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617879 ID=DN617879; Name=DN617879; organism=Citrus sinensis; type=EST; length=605bp
GAATATCATAAAATTGAAGTACTTTAAACATAGGATGATAGGATTTTACA
TAAGTATATATCAGCATATCATCTGTGGTGATGATGATGATAGTTATGCA
TAAAAGCATACTGATCGTTTTACAGTACATGAAAACCATAATCTACATTC
TACAACCCTCCTCCTCATATGAGCAGGTGATGATCGCTGCTACTACATAA
AAACTTGACAGTAAGTAGATCATTACGCAGCCTCAGCAAAGCCGATCCGG
AGCTTACCAGAGTCGAAAACAGTGTGATAAACCCCCATGAATACATCTCC
CAGAATCCACAGAGGACCCCTTGGAGGAGGCAGGTCGAAAGCCATGAAGC
CACTGATGCAGACTTCTGCAATCCCTTCTCCGGTTTTCAGAATATACTGC
TCTGGAGAGAGGTTGAAAATTTTGTCTCCGATGGTGAATGAAACATTTGG
CATGGTTGGAATGCGACCACAGTCAATAATTGATTCTCCCATCGGATTTG
GCAGGCTGTCGCAGAGCTCATTTATATAACTGAGTACTTTCTCCTTTGTT
TGCTTTTGTTTTAGCTGATTCTGGACCCAAACACGGTCATTTCACAAGCA
CTGCA
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