DN617876

Overview
NameDN617876
Unique NameDN617876
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DN617876 vs. ExPASy Swiss-Prot
Match: BRE_CHICK (BRCA1-A complex subunit BRE OS=Gallus gallus GN=BRE PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.117e-14
Identity = 46/106 (43.40%), Postives = 62/106 (58.49%), Query Frame = 1 
Query:  211 DRFTLLIPYCLDTIKWDVIYNAEFPHVPPDVIFGPEDEDFHPFYNESGGEGDSRSIKNSLATWNNKDPTRLLALIWELRDQYMSYQRKRVGEVDDDRLKFEICTML 528
            DRF L IPY  +T+KWD+I+NA +P +PPD IFG ED +F P            S  ++LA+WN  +P  LL ++ EL  QY  +Q  R+ E    RL FE  T+L
Sbjct:   54 DRFKLHIPYAGETLKWDIIFNAHYPDLPPDFIFG-EDAEFLP----------DPSALHNLASWNPSNPECLLLVVKELVQQYHQFQCSRLRE--SSRLMFEYQTLL 146
[Close]
BLAST of DN617876 vs. ExPASy Swiss-Prot
Match: BRE_DANRE (BRCA1-A complex subunit BRE OS=Danio rerio GN=bre PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.751e-13
Identity = 45/106 (42.45%), Postives = 61/106 (57.55%), Query Frame = 1 
Query:  211 DRFTLLIPYCLDTIKWDVIYNAEFPHVPPDVIFGPEDEDFHPFYNESGGEGDSRSIKNSLATWNNKDPTRLLALIWELRDQYMSYQRKRVGEVDDDRLKFEICTML 528
            DRF L IPY  +T+KWD+I+NA  P +PPD IFG ED DF P  +E            +L +W++  P  LL L+ E+  QY  YQ +R+   D  RL FE  ++L
Sbjct:   57 DRFKLHIPYAGETLKWDIIFNARDPELPPDFIFG-EDADFLPEPSE----------LPNLVSWDSGKPECLLLLVKEMLQQYHQYQCQRLR--DSSRLLFEYDSLL 149
The following BLAST results are available for this feature:
BLAST of DN617876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
BRE_CHICK1.117e-1443.40BRCA1-A complex subunit BRE OS=Gallus gallus GN=BR... [more]
BRE_DANRE2.751e-1342.45BRCA1-A complex subunit BRE OS=Danio rerio GN=bre ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01M22_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001M22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617876 ID=DN617876; Name=DN617876; organism=Citrus sinensis; type=EST; length=654bp
GAGCGGCAGACAATCGTGTAGATCGCCGGTGACACTTTCTAGCAACGCCA
CCAACAAAAGCAGTCTCCCACCGACCGATTGTACATAACGATGACGTATG
ATGGATTCCCTCCTTTCATCTCAGCTCAGCTTCATTACCTCATTAATCAC
TTCGCTCATCCCGTCAGGGTTGAACAGGCGTGGTCTGGGAGCAAGTACTC
GAATACTCTTGATCGGTTCACTTTGCTCATACCTTACTGTTTAGACACTA
TCAAATGGGATGTTATATACAATGCAGAGTTTCCACATGTACCTCCCGAT
GTTATATTTGGCCCTGAAGATGAAGATTTTCATCCATTTTACAATGAGAG
TGGGGGAGAAGGGGATTCAAGGTCAATTAAGAACAGTTTGGCTACTTGGA
ATAACAAAGATCCCACACGGCTGCTGGCTCTCATTTGGGAATTAAGGGAT
CAATACATGTCCTACCAGCGGAAGCGTGTTGGGGAAGTCGATGATGATCG
GTTGAAATTTGAAATTTGCACTATGTTATCCAGGGAGGGTATTGAAATGC
ATACGAGTTCAGGTGTTGAAAAGCCAGAGGAGGTCAAATTTGCCGTGCCT
CTCATGGATATGAACATAAATAAAATGGTGGTGGGGTGCCCCTGGAGACA
TCCA
back to top