DN617871

Overview
NameDN617871
Unique NameDN617871
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length549
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617871 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.416e-77
Identity = 135/144 (93.75%), Postives = 139/144 (96.53%), Query Frame = 3
Query:  117 DGGRITMRRTVKSTPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGY 548
            +GGR+TMRRTVKS PQSIWYG DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPEILSKNGV FGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSILAIWA QVVLMGFVEGY
Sbjct:    3 EGGRVTMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGY 146          
BLAST of DN617871 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 1.981e-71
Identity = 134/175 (76.57%), Postives = 149/175 (85.14%), Query Frame = 3
Query:   30 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSTPQSI-WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGY 548
            AT A+   +FAGQ A++ S        ++  GRITMR+ V KS P S  WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGY
Sbjct:    4 ATMALSSPSFAGQ-AVKLSPSASE---ISGNGRITMRKAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGY 174          
BLAST of DN617871 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 3.379e-71
Identity = 129/175 (73.71%), Postives = 148/175 (84.57%), Query Frame = 3
Query:   30 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSTPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGY 548
            A +A+  +A AGQ+ ++  NE  RKV      R+TMRRTV  +  S  IWYG DRPK+LGPFS +TPSYL GEF GDYGWDTAGLS+DPETFA+NRELEVIH+RWAMLGALGC+ PE+L+K+GVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGY
Sbjct:    3 AATAMHSTALAGQSLVKPVNELSRKVLGNVEARVTMRRTVSKSAGSDTIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGY 177          
BLAST of DN617871 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 3.379e-71
Identity = 135/177 (76.27%), Postives = 144/177 (81.36%), Query Frame = 3
Query:   30 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVK----STPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGY 548
            +T AI  +A AG            KVG    GRITMR+TV     +   S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWACQVVLMG VEGY
Sbjct:    4 STMAISSTAMAGTPI---------KVGSFGEGRITMRKTVGKPKVAASGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGY 171          
BLAST of DN617871 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 9.831e-71
Identity = 133/177 (75.14%), Postives = 150/177 (84.75%), Query Frame = 3
Query:   30 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSTPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGY 548
            AT A+  S+FAG+ A++ S       G    G++TMR+TV K+ P S    WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGY
Sbjct:    4 ATMALSSSSFAGK-AVKLSPSSSEITG---NGKVTMRKTVTKAKPLSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGY 176          
BLAST of DN617871 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 2.190e-70
Identity = 130/175 (74.29%), Postives = 146/175 (83.43%), Query Frame = 3
Query:   30 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKS--TPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGY 548
            AT A+   +FAGQ A++ S       G    GR++MR+TV       S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQV+LMG VEGY
Sbjct:    4 ATMALSSPSFAGQ-AVKLSPSAPEITG---NGRVSMRKTVAKPVASSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGY 174          
BLAST of DN617871 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 2.860e-70
Identity = 132/177 (74.58%), Postives = 148/177 (83.62%), Query Frame = 3
Query:   30 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSTPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGY 548
            +T A+  S FAG+ A++ S       G    GR+TMR+T  K+ P S    WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGY
Sbjct:    4 STMALSSSTFAGK-AVKLSPSSSEITG---NGRVTMRKTATKAKPASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGY 176          
BLAST of DN617871 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 3.736e-70
Identity = 131/177 (74.01%), Postives = 145/177 (81.92%), Query Frame = 3
Query:   30 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSTPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGY 548
            AT AI  S+FAG+     S+       +   G+ TMR+TV K+ P S    WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+ ++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGY
Sbjct:    4 ATMAISSSSFAGKAVNVPSSS-----QITGNGKATMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGY 175          
BLAST of DN617871 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 8.322e-70
Identity = 128/176 (72.73%), Postives = 144/176 (81.82%), Query Frame = 3
Query:   33 TSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSTPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGY 548
            T A+  S+FAG+     S+       +   G++TMR+TV K+ P S    WYGPDR KYLGPFS + PSYLTGEFP DYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+ ++NG+KFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGY
Sbjct:    5 TMALSSSSFAGKAVKLSSSSSE----ITGNGKVTMRKTVTKAKPASSSSPWYGPDRVKYLGPFSGEAPSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGIKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGY 176          
BLAST of DN617871 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 1.854e-69
Identity = 130/175 (74.29%), Postives = 143/175 (81.71%), Query Frame = 3
Query:   27 LATS-AIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSTPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGY 548
            +ATS A   S F+GQ  L+  NE  RKVG  +     M    K+   SIWYG DRP YLGPFS   PSYL+GEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCV PE+L+KNGVKFGEAVWFKAG+QIF+EGGLDYLGNP+L+HAQSILAIWACQV+LMG VEGY
Sbjct:    1 MATSTAALTSTFSGQQ-LKPVNELSRKVGAGEARVQMMAPKSKAPSGSIWYGSDRPLYLGPFSGSPPSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGY 174          
The following BLAST results are available for this feature:
BLAST of DN617871 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CB25_SOLLC1.416e-7793.75Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB2B_SOLLC1.981e-7176.57Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB2_PHYPA3.379e-7173.71Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_MAIZE3.379e-7176.27Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB25_TOBAC9.831e-7175.14Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB22_TOBAC2.190e-7074.29Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB2G_SOLLC2.860e-7074.58Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB24_PETSP3.736e-7074.01Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB23_PETSP8.322e-7072.73Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB23_POLMU1.854e-6974.29Chlorophyll a-b binding protein type 1 member F3, ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01M20_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001M20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617871 ID=DN617871; Name=DN617871; organism=Citrus sinensis; type=EST; length=549bp
GAAAAAGCTTTTCGCATAAGAACATATTGGCAACCTCTGCTATCCAACAA
TCAGCATTTGCTGGCCAGACCGCCTTGAGGCAATCCAATGAGTTTGTCCG
CAAGGTTGGAGTTGCTGACGGTGGCCGTATCACCATGAGGAGGACTGTCA
AATCCACTCCCCAGAGCATCTGGTACGGCCCAGACCGCCCAAAGTACTTG
GGACCATTCTCTGAGCAAACACCATCATACTTGACTGGTGAGTTCCCTGG
TGACTATGGCTGGGATACCGCTGGTTTATCAGCAGACCCCGAGACATTTG
CTAAGAACCGTGAGCTAGAGGTGATCCACAGCAGATGGGCAATGCTTGGA
GCTCTTGGCTGCGTCTTCCCTGAAATCCTCTCCAAGAATGGAGTGAAGTT
CGGCGAAGCAGTTTGGTTCAAGGCTGGCGCTCAAATCTTCTCTGAAGGTG
GCCTTGACTATCTTGGCAACCCCAACCTCATTCATGCTCAGAGCATTTTG
GCTATCTGGGCCTGCCAGGTTGTGCTCATGGGTTTTGTTGAAGGATACA
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