DN617870

Overview
NameDN617870
Unique NameDN617870
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length828
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617870 vs. ExPASy Swiss-Prot
Match: NAC61_ARATH (Putative NAC domain-containing protein 61 OS=Arabidopsis thaliana GN=NAC061 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.555e-20
Identity = 58/139 (41.73%), Postives = 82/139 (58.99%), Query Frame = 3
Query:  294 LPPGFRFHPTDEELVVQYLKRKIFACPLPA-SIIPEVDVCKSDPWDLP--------GDVAQERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSRTDWIMHEYRLVTAAN 683
            L  GFRF+PT+ EL+  YL+ ++        S+IP +DV   +P  LP        GD A++  FF  R+ +   G R +R TGSGYWKATG    +  S  N+++G+KKT+VFY GK P G +T W M+EY+ V  A+
Sbjct:    5 LSVGFRFYPTEVELLTYYLRIQLGGGNATIHSLIPILDVFSVEPTQLPNLAGERCRGD-AEQWIFFVPRQEREARGGRPSRTTGSGYWKATGSPGPVF-SPDNRVIGVKKTMVFYTGKAPTGRKTKWKMNEYKAVETAS 141          
BLAST of DN617870 vs. ExPASy Swiss-Prot
Match: NAC5_ARATH (NAC domain-containing protein 5 OS=Arabidopsis thaliana GN=NAC005 PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 3.829e-19
Identity = 55/130 (42.31%), Postives = 70/130 (53.85%), Query Frame = 3
Query:  297 PPGFRFHPTDEELVVQYLKRKIFACPLPA--SIIPEVDVCKSDPWDLPGDVAQER-----YFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGN-QIVGMKKTLVFYRGKPPHGSRTDWIMHEY 662
            P GFRF PTD E+V  YL+ K           +I  VD+C  DPWDLP     +      YFF  +E KY  G+R  R T SG+WK TG+   I    G+ + +G K+ LVF   K   GS++DW MHEY
Sbjct:    4 PVGFRFRPTDGEIVDIYLRPKNLESNTSHVDEVISTVDICSFDPWDLPSHSRMKTRDQVWYFFGRKENKYGKGDRQIRKTKSGFWKKTGVTMDIMRKTGDREKIGEKRVLVF---KNHGGSKSDWAMHEY 130          
BLAST of DN617870 vs. ExPASy Swiss-Prot
Match: NAC3_ARATH (NAC domain-containing protein 3 OS=Arabidopsis thaliana GN=NAC003 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.609e-17
Identity = 57/134 (42.54%), Postives = 72/134 (53.73%), Query Frame = 3
Query:  288 LRLPPGFRFHPTDEELVVQYL--KRKIFACPLPASIIPEVDVCKSDPWDLP-------GDVAQERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSRTDWIMHEY 662
            +  P G RF PTDEE+VV YL  K            I  V VC+ DPW+LP        DVA    FF  +E KY  G++  R T SG+WK+TG  K I   R  Q +G KK L+FY  K    S++DW++HEY
Sbjct:    1 METPVGLRFCPTDEEIVVDYLWPKNSDRDTSHVDRFINTVPVCRLDPWELPCQSRIKLKDVAW--CFFRPKENKYGRGDQQMRKTKSGFWKSTGRPKPI--MRNRQQIGEKKILMFYTSKE---SKSDWVIHEY 127          
BLAST of DN617870 vs. ExPASy Swiss-Prot
Match: NAC1_ARATH (NAC domain-containing protein 1 OS=Arabidopsis thaliana GN=NAC001 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 2.174e-14
Identity = 50/133 (37.59%), Postives = 67/133 (50.38%), Query Frame = 3
Query:  303 GFRFHPTDEELVVQYLKRKIFACPLP--ASIIPEVDVCKSDPWDLPGDVAQER-----YFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRG------NQIVGMKKTLVFYRGKPPHGSRTDWIMHEY 662
            GF F P DEELV  YL+ KI           I EV++C  DPW+L      +      YFFS RE     GNR +R T SG WK TG   ++    G         +G K+ LVF  G+ P  +++DW++HE+
Sbjct:    6 GFGFRPNDEELVGHYLRNKIEGNTSRDVEVAISEVNICSYDPWNLRFQSKYKSRDAMWYFFSRRENN--KGNRQSRTTVSGKWKLTGESVEVKDQWGFCSEGFRGKIGHKRVLVFLDGRYPDKTKSDWVIHEF 136          
The following BLAST results are available for this feature:
BLAST of DN617870 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
NAC61_ARATH1.555e-2041.73Putative NAC domain-containing protein 61 OS=Arabi... [more]
NAC5_ARATH3.829e-1942.31NAC domain-containing protein 5 OS=Arabidopsis tha... [more]
NAC3_ARATH1.609e-1742.54NAC domain-containing protein 3 OS=Arabidopsis tha... [more]
NAC1_ARATH2.174e-1437.59NAC domain-containing protein 1 OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01M19_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001M19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617870 ID=DN617870; Name=DN617870; organism=Citrus sinensis; type=EST; length=828bp
GAAAGAGCTTGAGTCTTGTTTACGCCAAAATGGGTCGCCCTTATTTATTC
CCCTGTTCCTCTTCTTAACAATCTATAAAGAAGCCTCGCTTTTCCAGCCC
CCTCTCTCAATTTACCCAGCCGAGGCCAACCCGTTCCCGTTCTTTTCATG
TTCCTCAGTCTTTCACTAAATTTGATGGGTTTTTAACAAAGTTTGCTCTG
AGCTGAGTTTTGGGCTTTGCAAAGACTTTTCGGTTACAGTGAAGATTAAG
ATTAATGGAGAAGATCAATTTTATGAAGAATGGTGTGCTGAGACTGCCTC
CGGGATTCCGGTTTCATCCTACGGACGAAGAACTTGTTGTTCAGTACTTG
AAGCGCAAGATTTTTGCCTGCCCCTTGCCCGCTTCCATAATTCCAGAAGT
TGATGTTTGCAAGTCTGATCCTTGGGATTTGCCAGGTGATGTGGCGCAAG
AGAGGTATTTTTTCAGCACAAGGGAAGCTAAGTACCCAAACGGGAACAGA
TCGAACAGGGCCACGGGGTCTGGTTATTGGAAGGCAACTGGGCTTGACAA
GCAAATTGCGACTTCCAGGGGCAACCAAATCGTGGGAATGAAAAAAACTC
TCGTTTTTTATAGAGGCAAGCCACCACACGGCTCTAGGACTGATTGGATC
ATGCATGAATACCGCCTTGTTACTGCTGCCAATGCCCCTCAAAAGAAAAA
CTTTGCCCAGACCCCAGCTGTGGCAACGGACAATTGGGTTCTATGCCGCA
TCTTTTTGAAGAAAAGAGGAGCCAAGAGTGAGGATGAGGAAACGTGCACC
GAAATTGGAGGAACCAGGGCTAACGGGC
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