DN617868

Overview
NameDN617868
Unique NameDN617868
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617868_ssr275 microsatellite DN617868_ssr275:275..286. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2838 contig Csv1_Contig2838:856..1516. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN617868 vs. ExPASy Swiss-Prot
Match: MPCP_YEAST (Mitochondrial phosphate carrier protein OS=Saccharomyces cerevisiae GN=MIR1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.029e-12
Identity = 49/116 (42.24%), Postives = 63/116 (54.31%), Query Frame = -3 
Query:  327 KFASFETIVEMIYKHAVPTPKDQCSKPLQLGISFAGGYVAGVFCAIVSHPADNLVSFLNNAKGA----TVG---DAVKKLGLWGLFTRGLPLRIVMIGTLTGAQWGIYDAFKVFVG 653
            KF  FE   E  Y  A   PK++ S      ++   G  AG+  AIVS PAD L+S +N  K A    TVG      K+LG +G F  GLP R+VM+GTLT  Q+GIY + K  +G
Sbjct:  187 KFLVFERASEFYYGFA--GPKEKLSSTSTTLLNLLSGLTAGLAAAIVSQPADTLLSKVNKTKKAPGQSTVGLLAQLAKQLGFFGSFA-GLPTRLVMVGTLTSLQFGIYGSLKSTLG 299
The following BLAST results are available for this feature:
BLAST of DN617868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
MPCP_YEAST3.029e-1242.24Mitochondrial phosphate carrier protein OS=Sacchar... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01M18_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001M18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617868 ID=DN617868; Name=DN617868; organism=Citrus sinensis; type=EST; length=661bp
TTTTTTGCGAGCTGGATATCAGAGTGAAATTTCATGTATAATCTAACTAC
AAAAGTTTTCTGATATTTGGATGAAAACAAAACCATCCTCAGCAAAAGCA
AATCTTAAGCTCGAACAAATAGTTCTCAATTATAAAGAATACTCTGACTT
GAGACACTCAAGCGCCTTCAATTTTGTCACCTATGTTTATTAATCCCTAT
CAAGAAGTTCTCCTGGAATCCACAAAACCCAAAATAAAACAATTCTATTT
GGTTGACCTACACCTTTGCAAGCTCAGCAGCAGCAGGGGCAGGAGCAACA
GGAGCAACACCACCAGTGGTTGGCAGTCCCACAAAAACTTTGAATGCATC
ATAGATTCCCCATTGAGCTCCAGTGAGTGTTCCAATCATGACAATACGGA
GAGGAAGCCCACGGGTAAACAGACCCCACAAACCTAGCTTCTTCACAGCA
TCACCAACAGTTGCTCCTTTGGCATTGTTAAGGAAAGAGACAAGATTGTC
AGCAGGATGCGACACAATAGCACAGAAAACACCAGCCACATAACCACCAG
CAAAACTAATTCCAAGCTGCAGAGGTTTGCTGCACTGGTCCTTTGGTGTG
GGAACTGCATGCTTGTAGATCATCTCAACAATGGTTTCAAAAGAAGCAAA
CTTCATCATAG
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